Wall clock time and date at job start Tue Mar 31 2020 22:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99743 * 2 1 4 4 C 1.52999 * 109.47145 * 209.99912 * 3 2 1 5 5 C 1.53000 * 109.47443 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46887 * 60.00191 * 5 4 3 7 7 C 1.50702 * 109.47148 * 60.00181 * 6 5 4 8 8 O 1.21274 * 119.99827 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99879 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47153 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47134 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47264 * 174.92795 * 12 11 10 14 14 H 1.08992 * 109.87388 * 304.35136 * 13 12 11 15 15 C 1.54324 * 109.88159 * 65.36449 * 13 12 11 16 16 C 1.55152 * 102.93923 * 141.60824 * 15 13 12 17 17 C 1.54910 * 101.58634 * 324.49727 * 16 15 13 18 18 N 1.47020 * 109.87928 * 183.33086 * 13 12 11 19 19 C 1.36941 * 125.64865 * 61.61634 * 18 13 12 20 20 H 1.08001 * 120.00185 * 14.14595 * 19 18 13 21 21 C 1.38807 * 119.99841 * 194.15417 * 19 18 13 22 22 N 1.31627 * 120.00080 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00152 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46946 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47024 * 119.99664 * 23 21 19 26 26 H 1.48496 * 109.47487 * 240.00144 * 23 21 19 27 27 C 1.52999 * 109.46923 * 300.00127 * 6 5 4 28 28 C 1.53000 * 109.47443 * 60.00213 * 27 6 5 29 29 H 1.08998 * 109.46734 * 299.99515 * 1 2 3 30 30 H 1.08996 * 109.47286 * 60.00138 * 1 2 3 31 31 H 1.09001 * 109.46623 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47545 * 330.00413 * 3 2 1 33 33 H 1.09003 * 109.46798 * 60.00348 * 4 3 2 34 34 H 1.09000 * 109.47578 * 300.00709 * 4 3 2 35 35 H 1.09000 * 109.47134 * 300.00763 * 5 4 3 36 36 H 1.08999 * 109.47206 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47038 * 180.02562 * 6 5 4 38 38 H 0.97001 * 119.99974 * 0.02562 * 9 7 6 39 39 H 1.09004 * 109.46762 * 60.00239 * 10 9 7 40 40 H 1.08998 * 109.47216 * 300.00160 * 10 9 7 41 41 H 1.08998 * 109.47455 * 300.00339 * 11 10 9 42 42 H 1.09004 * 109.46826 * 60.00603 * 11 10 9 43 43 H 1.09003 * 109.47169 * 294.93120 * 12 11 10 44 44 H 1.08996 * 109.46881 * 54.92565 * 12 11 10 45 45 H 1.08994 * 110.72265 * 259.97642 * 15 13 12 46 46 H 1.09000 * 110.71914 * 23.24738 * 15 13 12 47 47 H 1.08996 * 111.00371 * 82.57755 * 16 15 13 48 48 H 1.09008 * 111.00592 * 206.38512 * 16 15 13 49 49 H 1.08997 * 110.36409 * 155.84755 * 17 16 15 50 50 H 1.09003 * 110.36721 * 278.17215 * 17 16 15 51 51 H 0.96997 * 119.99723 * 180.02562 * 22 21 19 52 52 H 1.09003 * 109.46798 * 180.02562 * 27 6 5 53 53 H 1.09000 * 109.47578 * 299.99722 * 27 6 5 54 54 H 1.08991 * 109.47423 * 179.97438 * 28 27 6 55 55 H 1.09004 * 109.46940 * 59.99699 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3588 1.2633 -0.7212 5 6 3.9814 2.6609 -0.7207 6 6 4.1890 3.1262 0.7220 7 6 5.1086 2.1663 1.4320 8 8 5.5537 1.2046 0.8424 9 7 5.4363 2.3767 2.7223 10 6 6.3298 1.4433 3.4127 11 6 6.5384 1.9094 4.8549 12 6 7.4711 0.9343 5.5762 13 6 7.7808 1.4662 6.9769 14 1 8.1941 2.4724 6.9081 15 6 6.4935 1.4847 7.8278 16 6 6.9968 1.0479 9.2289 17 6 8.0971 0.0223 8.8584 18 7 8.7393 0.5767 7.6488 19 6 10.0126 0.3076 7.2226 20 1 10.4701 0.9255 6.4641 21 6 10.7151 -0.7595 7.7652 22 7 10.1576 -1.5124 8.6899 23 14 12.4517 -1.1272 7.1833 24 1 12.8453 -0.1404 6.1457 25 1 13.3882 -1.0368 8.3322 26 1 12.5023 -2.4960 6.6099 27 6 2.8403 3.1683 1.4432 28 6 2.2177 1.7707 1.4427 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.3449 1.9994 -0.5137 33 1 3.2110 0.9314 -1.7489 34 1 4.0241 0.5694 -0.2075 35 1 3.3163 3.3552 -1.2342 36 1 4.9420 2.6309 -1.2349 37 1 4.6321 4.1220 0.7224 38 1 5.0799 3.1458 3.1940 39 1 7.2905 1.4126 2.8986 40 1 5.8857 0.4479 3.4128 41 1 6.9827 2.9047 4.8545 42 1 5.5779 1.9404 5.3692 43 1 6.9875 -0.0394 5.6559 44 1 8.3984 0.8341 5.0122 45 1 6.0706 2.4886 7.8656 46 1 5.7649 0.7725 7.4404 47 1 7.4178 1.8928 9.7737 48 1 6.1983 0.5755 9.8012 49 1 8.8234 -0.0634 9.6666 50 1 7.6527 -0.9492 8.6419 51 1 10.6488 -2.2578 9.0694 52 1 2.9881 3.5002 2.4709 53 1 2.1751 3.8626 0.9298 54 1 1.2572 1.8007 1.9569 55 1 2.8829 1.0765 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480828655.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:10 Heat of formation + Delta-G solvation = -110.328421 kcal Electronic energy + Delta-G solvation = -30202.406797 eV Core-core repulsion = 26237.804912 eV Total energy + Delta-G solvation = -3964.601885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56752 -39.58855 -39.29209 -37.16227 -36.49348 -34.70230 -33.71013 -31.72490 -31.37138 -31.15779 -29.35836 -27.42255 -26.64850 -25.74975 -23.91602 -23.56776 -22.69845 -22.07084 -21.85590 -20.86581 -20.24539 -18.70988 -17.68656 -17.59606 -17.21367 -16.97856 -16.75100 -16.42079 -16.05917 -15.96468 -15.82220 -15.56118 -15.09991 -14.72189 -14.45802 -14.24580 -14.03294 -13.86726 -13.70710 -13.58491 -13.32272 -13.13406 -13.10461 -12.99250 -12.87411 -12.76412 -12.66460 -12.51133 -12.24661 -12.01830 -11.96974 -11.85254 -11.71779 -11.65602 -11.53963 -11.46457 -11.35754 -11.30716 -11.14760 -10.67338 -10.49794 -10.37713 -10.01138 -8.78136 -7.86121 -5.21381 1.42724 1.44111 1.53734 1.72538 2.25655 2.49050 2.86251 3.32620 3.62605 3.69552 3.73110 3.86813 3.97652 4.00666 4.06938 4.15835 4.17337 4.24798 4.29021 4.35806 4.39231 4.43704 4.46980 4.50937 4.54459 4.58582 4.62457 4.77492 4.82142 4.82660 4.83698 4.86653 4.92361 4.99759 5.03955 5.05048 5.08296 5.14328 5.20958 5.24191 5.25153 5.32867 5.34408 5.43083 5.50338 5.51999 5.60945 5.67877 5.70673 5.79500 6.27287 6.35817 6.65122 7.12124 7.37326 7.81902 8.49535 9.25758 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.002106 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.250259 B =13293.683577 C =13840.232940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.090 3.910 4 C -0.133 4.133 5 C -0.091 4.091 6 C -0.105 4.105 7 C 0.507 3.493 8 O -0.583 6.583 9 N -0.716 5.716 10 C 0.126 3.874 11 C -0.106 4.106 12 C -0.112 4.112 13 C 0.152 3.848 14 H 0.037 0.963 15 C -0.110 4.110 16 C -0.137 4.137 17 C 0.173 3.827 18 N -0.620 5.620 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.068 4.068 22 N -0.950 5.950 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.291 1.291 26 H -0.296 1.296 27 C -0.101 4.101 28 C -0.144 4.144 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.132 0.868 38 H 0.416 0.584 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.030 0.970 50 H -0.010 1.010 51 H 0.245 0.755 52 H 0.090 0.910 53 H 0.106 0.894 54 H 0.077 0.923 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.960 16.204 -15.754 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C 0.033 3.967 4 C -0.171 4.171 5 C -0.129 4.129 6 C -0.126 4.126 7 C 0.295 3.705 8 O -0.463 6.463 9 N -0.368 5.368 10 C 0.002 3.998 11 C -0.144 4.144 12 C -0.153 4.153 13 C 0.046 3.954 14 H 0.055 0.945 15 C -0.148 4.148 16 C -0.175 4.175 17 C 0.048 3.952 18 N -0.344 5.344 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.223 1.223 27 C -0.138 4.138 28 C -0.182 4.182 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.049 0.951 50 H 0.008 0.992 51 H 0.055 0.945 52 H 0.108 0.892 53 H 0.124 0.876 54 H 0.096 0.904 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.357 15.232 -16.115 31.489 hybrid contribution 1.280 -0.977 0.172 1.619 sum -21.077 14.255 -15.943 30.027 Atomic orbital electron populations 1.22940 0.79798 1.03417 1.00928 1.87927 1.21326 1.29516 1.95234 1.22273 0.94690 0.84037 0.95746 1.21803 0.95741 0.99243 1.00310 1.21300 1.01397 0.95553 0.94673 1.21507 0.95810 0.99519 0.95755 1.21390 0.80980 0.86278 0.81823 1.90652 1.55925 1.32761 1.66979 1.45946 1.49388 1.29505 1.12010 1.21167 0.93026 0.92642 0.93004 1.21614 1.00767 0.99576 0.92428 1.21824 0.98149 0.98235 0.97055 1.21223 0.89943 0.92803 0.91464 0.94534 1.22579 0.95664 1.02401 0.94144 1.22878 0.98168 0.99002 0.97486 1.21274 0.92424 0.92597 0.88902 1.44947 1.10778 1.53209 1.25509 1.19330 0.89812 1.08312 1.18296 0.90616 1.25673 1.02691 0.97435 1.00273 1.70158 1.37832 1.20515 1.31425 0.85126 0.79991 0.77430 0.77562 1.19054 1.21783 1.22289 1.21547 0.93981 0.96210 1.02069 1.22062 1.01534 0.97660 0.96931 0.93091 0.92692 0.89449 0.89956 0.92152 0.92213 0.88070 0.92119 0.85062 0.74636 0.93695 0.93845 0.89828 0.89232 0.94435 0.94670 0.88287 0.91238 0.91658 0.90103 0.95103 0.99237 0.94545 0.89179 0.87558 0.90394 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 113.37 1.23 1.57 16 2 O -0.42 -9.31 10.35 -148.98 -1.54 -10.85 16 3 C 0.09 1.55 2.61 30.59 0.08 1.63 16 4 C -0.13 -2.77 5.28 30.59 0.16 -2.61 16 5 C -0.09 -1.33 5.09 30.60 0.16 -1.18 16 6 C -0.10 -1.32 3.01 -11.54 -0.03 -1.35 16 7 C 0.51 11.32 5.64 87.66 0.49 11.81 16 8 O -0.58 -19.18 13.66 -3.01 -0.04 -19.22 16 9 N -0.72 -13.68 5.45 -463.07 -2.52 -16.20 16 10 C 0.13 3.26 5.67 86.38 0.49 3.76 16 11 C -0.11 -2.49 5.08 30.59 0.16 -2.34 16 12 C -0.11 -3.98 4.69 30.60 0.14 -3.84 16 13 C 0.15 5.85 3.18 45.34 0.14 5.99 16 14 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 15 C -0.11 -3.36 5.61 31.78 0.18 -3.18 16 16 C -0.14 -4.88 7.08 31.98 0.23 -4.66 16 17 C 0.17 8.66 5.44 86.79 0.47 9.14 16 18 N -0.62 -31.80 3.14 -667.45 -2.09 -33.90 16 19 C -0.23 -12.95 9.75 84.03 0.82 -12.13 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 21 C -0.07 -3.96 5.47 84.86 0.46 -3.50 16 22 N -0.95 -58.79 10.58 21.65 0.23 -58.56 16 23 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 27 C -0.10 -0.85 5.36 30.59 0.16 -0.69 16 28 C -0.14 -2.20 5.32 30.60 0.16 -2.04 16 29 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 30 H 0.05 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 0.97 7.79 -2.39 -0.02 0.95 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.78 5.51 -2.39 -0.01 1.77 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.42 4.71 7.89 -92.71 -0.73 3.98 16 39 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.72 7.57 -2.38 -0.02 1.71 16 43 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 44 H 0.03 1.42 7.89 -2.39 -0.02 1.40 16 45 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 49 H 0.03 1.75 6.90 -2.39 -0.02 1.73 16 50 H -0.01 -0.58 8.08 -2.39 -0.02 -0.60 16 51 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 52 H 0.09 0.49 7.57 -2.39 -0.02 0.47 16 53 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 54 H 0.08 0.98 7.87 -2.39 -0.02 0.96 16 55 H 0.04 0.84 7.22 -2.39 -0.02 0.82 16 Total: -1.00 -79.63 417.17 1.67 -77.96 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.11 Total: 15.08 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.50 Total: -3.63 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -4.39 Total: -108.66 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.58 Total: -30.07 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -79.63 1.67 -77.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480828655.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.367 kcal (2) G-P(sol) polarization free energy of solvation -79.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds