Wall clock time and date at job start Tue Mar 31 2020 22:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42892 * 114.00448 * 2 1 4 4 C 1.52994 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47069 * 300.00054 * 4 3 2 6 6 O 1.21280 * 119.99798 * 239.99444 * 5 4 3 7 7 N 1.34768 * 119.99842 * 59.99992 * 5 4 3 8 8 C 1.46508 * 119.99612 * 179.97438 * 7 5 4 9 9 H 1.08995 * 110.05562 * 33.58441 * 8 7 5 10 10 C 1.54378 * 110.04681 * 272.10605 * 8 7 5 11 11 C 1.54890 * 104.19649 * 217.09320 * 10 8 7 12 12 C 1.54885 * 102.74788 * 37.97086 * 11 10 8 13 13 C 1.53883 * 110.02848 * 155.00172 * 8 7 5 14 14 H 1.08999 * 110.02752 * 238.61397 * 13 8 7 15 15 C 1.52996 * 110.03124 * 359.97438 * 13 8 7 16 16 N 1.46504 * 109.46681 * 184.30953 * 15 13 8 17 17 C 1.36943 * 119.99781 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27904 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.53007 * 109.47274 * 60.00004 * 4 3 2 26 26 C 1.52994 * 109.47274 * 179.97438 * 25 4 3 27 27 C 1.53003 * 109.47119 * 299.99967 * 26 25 4 28 28 C 1.52998 * 109.47251 * 60.00255 * 27 26 25 29 29 C 1.52998 * 109.47381 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47279 * 299.99684 * 1 2 3 31 31 H 1.08998 * 109.47757 * 59.99667 * 1 2 3 32 32 H 1.09003 * 109.47649 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47297 * 60.00104 * 3 2 1 34 34 H 1.09003 * 109.46736 * 300.00262 * 3 2 1 35 35 H 0.97003 * 120.00539 * 0.02562 * 7 5 4 36 36 H 1.09003 * 110.45913 * 98.42668 * 10 8 7 37 37 H 1.09004 * 110.62182 * 335.84254 * 10 8 7 38 38 H 1.09003 * 110.75466 * 279.65546 * 11 10 8 39 39 H 1.09003 * 110.90884 * 156.36208 * 11 10 8 40 40 H 1.08998 * 110.48454 * 203.37421 * 12 11 10 41 41 H 1.09002 * 110.59855 * 80.79320 * 12 11 10 42 42 H 1.09006 * 109.47179 * 64.31570 * 15 13 8 43 43 H 1.08997 * 109.47540 * 304.31033 * 15 13 8 44 44 H 0.97000 * 120.00410 * 0.02562 * 16 15 13 45 45 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.46573 * 300.00330 * 25 4 3 47 47 H 1.09003 * 109.46637 * 59.99716 * 25 4 3 48 48 H 1.08999 * 109.47421 * 179.97438 * 26 25 4 49 49 H 1.09003 * 109.47249 * 59.99780 * 26 25 4 50 50 H 1.09001 * 109.47365 * 299.99760 * 27 26 25 51 51 H 1.09008 * 109.46876 * 180.02562 * 27 26 25 52 52 H 1.08998 * 109.47331 * 180.02562 * 28 27 26 53 53 H 1.09001 * 109.47341 * 59.99490 * 28 27 26 54 54 H 1.09002 * 109.47660 * 300.00434 * 29 4 3 55 55 H 1.09000 * 109.47117 * 60.00072 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 3.9805 0.4364 1.2295 6 8 4.7226 0.9687 2.0276 7 7 3.5541 -0.8242 1.4427 8 6 3.9874 -1.5516 2.6383 9 1 4.1073 -0.8610 3.4730 10 6 5.3184 -2.2825 2.3598 11 6 5.1873 -3.6182 3.1330 12 6 3.6981 -3.9891 2.9243 13 6 2.9577 -2.6377 2.9964 14 1 2.5774 -2.4737 4.0047 15 6 1.8038 -2.6174 1.9921 16 7 0.7825 -3.5844 2.4022 17 6 -0.3511 -3.7433 1.6504 18 1 -0.4924 -3.1554 0.7555 19 6 -1.3214 -4.6554 2.0422 20 7 -1.1495 -5.3714 3.1330 21 14 -2.8713 -4.8665 1.0210 22 1 -2.8228 -3.9511 -0.1474 23 1 -2.9641 -6.2707 0.5467 24 1 -4.0592 -4.5451 1.8521 25 6 3.9864 0.4254 -1.2503 26 6 5.5116 0.3051 -1.2512 27 6 6.1334 1.7031 -1.2516 28 6 5.6826 2.4621 -0.0020 29 6 4.1578 2.5822 -0.0013 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8462 -0.8900 35 1 2.9610 -1.2501 0.8042 36 1 6.1587 -1.7020 2.7408 37 1 5.4377 -2.4694 1.2926 38 1 5.4051 -3.4749 4.1914 39 1 5.8389 -4.3805 2.7058 40 1 3.3559 -4.6544 3.7171 41 1 3.5514 -4.4529 1.9488 42 1 2.1781 -2.8818 1.0030 43 1 1.3671 -1.6192 1.9604 44 1 0.9092 -4.1121 3.2061 45 1 -1.8274 -6.0090 3.4065 46 1 3.5429 -0.5703 -1.2502 47 1 3.6643 0.9665 -2.1400 48 1 5.8329 -0.2360 -2.1412 49 1 5.8340 -0.2357 -0.3614 50 1 5.8111 2.2440 -2.1413 51 1 7.2201 1.6173 -1.2527 52 1 6.1252 3.4582 -0.0024 53 1 6.0049 1.9213 0.8878 54 1 3.8358 3.1230 -0.8912 55 1 3.8366 3.1233 0.8887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482677330.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:07 Heat of formation + Delta-G solvation = -112.091011 kcal Electronic energy + Delta-G solvation = -32869.132887 eV Core-core repulsion = 28904.454570 eV Total energy + Delta-G solvation = -3964.678317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.98177 -39.95286 -38.63202 -37.70952 -36.16578 -34.67250 -33.25159 -33.03771 -31.58874 -30.13048 -28.56013 -27.99770 -26.32323 -26.05331 -24.18288 -23.95510 -23.51260 -21.81738 -21.51687 -20.42760 -20.22101 -19.06628 -17.72096 -17.47860 -17.16529 -16.70835 -16.57424 -16.48208 -16.15032 -15.68390 -15.56530 -15.24639 -15.18276 -14.96175 -14.78241 -14.68251 -14.46309 -14.22804 -13.48890 -13.45026 -13.12892 -13.10955 -13.03186 -12.92127 -12.84190 -12.79211 -12.60965 -12.30231 -12.20454 -12.06907 -11.95250 -11.91280 -11.70715 -11.68392 -11.56481 -11.52778 -11.40911 -11.06321 -10.99205 -10.89104 -10.61311 -10.34206 -9.83532 -8.93663 -7.89698 -5.17392 1.49034 1.49530 1.59013 1.73501 2.32838 2.59214 2.74327 3.44133 3.50470 3.65675 3.66394 3.71586 3.84773 3.91401 4.05827 4.20142 4.22366 4.27919 4.38292 4.41364 4.47483 4.49045 4.50916 4.56393 4.56825 4.57963 4.60381 4.63625 4.66772 4.70516 4.77413 4.78655 4.93869 4.95751 4.96206 5.04119 5.08005 5.15171 5.16411 5.21845 5.27128 5.29692 5.31829 5.38793 5.40765 5.41423 5.48663 5.58028 5.62119 5.79419 6.18590 6.31989 6.74286 7.38749 7.40853 8.14445 8.38840 9.34521 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.003965 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.017598 B = 7059.876775 C = 8588.914596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.402 6.402 3 C 0.068 3.932 4 C -0.071 4.071 5 C 0.524 3.476 6 O -0.576 6.576 7 N -0.708 5.708 8 C 0.151 3.849 9 H 0.074 0.926 10 C -0.121 4.121 11 C -0.113 4.113 12 C -0.109 4.109 13 C -0.104 4.104 14 H 0.067 0.933 15 C 0.170 3.830 16 N -0.741 5.741 17 C -0.230 4.230 18 H 0.080 0.920 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.297 1.297 24 H -0.297 1.297 25 C -0.099 4.099 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.131 4.131 29 C -0.087 4.087 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.028 0.972 44 H 0.372 0.628 45 H 0.248 0.752 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.039 0.961 50 H 0.078 0.922 51 H 0.062 0.938 52 H 0.069 0.931 53 H 0.063 0.937 54 H 0.094 0.906 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.696 15.345 -10.120 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.321 6.321 3 C -0.008 4.008 4 C -0.074 4.074 5 C 0.312 3.688 6 O -0.457 6.457 7 N -0.362 5.362 8 C 0.045 3.955 9 H 0.092 0.908 10 C -0.160 4.160 11 C -0.150 4.150 12 C -0.146 4.146 13 C -0.123 4.123 14 H 0.086 0.914 15 C 0.044 3.956 16 N -0.383 5.383 17 C -0.362 4.362 18 H 0.098 0.902 19 C -0.269 4.269 20 N -0.623 5.623 21 Si 0.796 3.204 22 H -0.185 1.185 23 H -0.225 1.225 24 H -0.225 1.225 25 C -0.137 4.137 26 C -0.160 4.160 27 C -0.151 4.151 28 C -0.168 4.168 29 C -0.125 4.125 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.058 0.942 50 H 0.096 0.904 51 H 0.081 0.919 52 H 0.088 0.912 53 H 0.081 0.919 54 H 0.112 0.888 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.193 15.596 -9.729 23.224 hybrid contribution -1.673 -0.737 0.202 1.839 sum 12.520 14.859 -9.527 21.641 Atomic orbital electron populations 1.22754 0.79665 1.02920 1.00612 1.87716 1.20875 1.28011 1.95483 1.22622 0.91018 0.85268 1.01937 1.20976 0.94651 0.97739 0.93999 1.20774 0.79235 0.81524 0.87277 1.90569 1.37984 1.68752 1.48366 1.46527 1.50033 1.14594 1.25089 1.21530 0.93549 0.92349 0.88074 0.90803 1.22686 0.96212 0.96246 1.00835 1.22439 0.95319 0.96520 1.00769 1.22275 0.95338 0.95507 1.01528 1.22134 0.95098 0.95535 0.99535 0.91445 1.20705 0.88106 0.92166 0.94670 1.42568 1.19626 1.46247 1.29848 1.19654 0.95712 1.16302 1.04518 0.90228 1.25495 1.02052 1.00023 0.99309 1.69821 1.36268 1.29373 1.26836 0.85171 0.79719 0.77220 0.78309 1.18472 1.22491 1.22502 1.21533 0.96002 1.00363 0.95795 1.21574 0.94948 0.97888 1.01578 1.21521 1.00069 0.95228 0.98246 1.21707 0.95022 1.00911 0.99186 1.21301 0.95991 0.92470 1.02764 0.94366 0.91694 0.90735 0.93612 0.89411 0.74453 0.91164 0.91304 0.90575 0.89958 0.92336 0.92422 0.96532 0.95397 0.79603 0.94284 0.91845 0.88749 0.90433 0.94242 0.90378 0.91930 0.91236 0.91889 0.88768 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 10.95 113.37 1.24 2.15 16 2 O -0.40 -10.33 6.81 -148.98 -1.01 -11.34 16 3 C 0.07 1.42 4.79 71.98 0.35 1.76 16 4 C -0.07 -1.52 0.52 -52.93 -0.03 -1.54 16 5 C 0.52 14.95 4.96 87.66 0.43 15.38 16 6 O -0.58 -19.35 13.32 -3.03 -0.04 -19.39 16 7 N -0.71 -20.76 3.94 -438.90 -1.73 -22.48 16 8 C 0.15 4.54 3.23 45.76 0.15 4.69 16 9 H 0.07 2.40 7.57 -2.39 -0.02 2.38 16 10 C -0.12 -3.13 6.53 31.71 0.21 -2.92 16 11 C -0.11 -2.76 6.91 31.88 0.22 -2.54 16 12 C -0.11 -3.41 6.05 31.67 0.19 -3.22 16 13 C -0.10 -3.51 2.97 -10.07 -0.03 -3.54 16 14 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.17 6.74 4.18 86.38 0.36 7.10 16 16 N -0.74 -36.94 5.44 -343.44 -1.87 -38.81 16 17 C -0.23 -12.42 9.99 84.03 0.84 -11.58 16 18 H 0.08 4.06 7.31 -2.91 -0.02 4.04 16 19 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 21 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 C -0.10 -1.85 4.49 30.59 0.14 -1.72 16 26 C -0.12 -2.26 5.70 30.59 0.17 -2.08 16 27 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 28 C -0.13 -2.57 5.63 30.58 0.17 -2.40 16 29 C -0.09 -1.64 4.37 30.58 0.13 -1.50 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 2.22 7.62 -2.39 -0.02 2.20 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.41 12.47 3.28 -92.71 -0.30 12.17 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.96 7.77 -2.39 -0.02 1.94 16 42 H 0.02 0.68 7.08 -2.38 -0.02 0.66 16 43 H 0.03 1.15 6.67 -2.39 -0.02 1.13 16 44 H 0.37 20.04 7.53 -92.71 -0.70 19.34 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.06 1.36 7.10 -2.39 -0.02 1.35 16 47 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.04 0.91 7.22 -2.39 -0.02 0.89 16 50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 52 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.06 1.67 5.51 -2.39 -0.01 1.66 16 54 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 55 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -65.58 407.39 2.72 -62.86 By element: Atomic # 1 Polarization: 48.36 SS G_CDS: -0.14 Total: 48.22 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.20 Total: -7.47 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -3.31 Total: -120.11 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.05 Total: -30.72 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.58 2.72 -62.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677330.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.228 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds