Wall clock time and date at job start Tue Mar 31 2020 22:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47274 * 60.00375 * 4 3 2 6 6 O 1.21290 * 119.99962 * 119.99504 * 5 4 3 7 7 N 1.34776 * 119.99804 * 299.99757 * 5 4 3 8 8 C 1.46505 * 119.99811 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.43145 * 34.29429 * 8 7 5 10 10 C 1.54270 * 110.48453 * 271.75770 * 8 7 5 11 11 C 1.53873 * 106.59741 * 217.71344 * 10 8 7 12 12 C 1.54266 * 106.59894 * 359.97438 * 11 10 8 13 13 C 1.54882 * 110.48500 * 156.84066 * 8 7 5 14 14 H 1.09004 * 110.75886 * 38.30687 * 13 8 7 15 15 C 1.52998 * 110.75441 * 274.93417 * 13 8 7 16 16 N 1.46504 * 109.46995 * 175.00323 * 15 13 8 17 17 C 1.36938 * 119.99816 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00346 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99821 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47063 * 60.00105 * 21 19 17 23 23 H 1.48499 * 109.47177 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47306 * 299.99978 * 21 19 17 25 25 C 1.52997 * 109.47317 * 300.00053 * 4 3 2 26 26 C 1.53002 * 109.46817 * 180.02562 * 25 4 3 27 27 C 1.52996 * 109.47346 * 60.00263 * 26 25 4 28 28 C 1.53005 * 109.47245 * 299.99999 * 27 26 25 29 29 C 1.52993 * 109.46886 * 59.99636 * 28 27 26 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 34 34 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 35 35 H 0.96993 * 120.00049 * 359.97438 * 7 5 4 36 36 H 1.08999 * 110.02951 * 336.99544 * 10 8 7 37 37 H 1.09000 * 110.03440 * 98.38084 * 10 8 7 38 38 H 1.08998 * 110.03591 * 119.28154 * 11 10 8 39 39 H 1.08996 * 110.03266 * 240.66848 * 11 10 8 40 40 H 1.08999 * 110.48566 * 142.28755 * 12 11 10 41 41 H 1.08999 * 110.48861 * 264.93710 * 12 11 10 42 42 H 1.08999 * 109.47185 * 294.99794 * 15 13 8 43 43 H 1.08998 * 109.47317 * 55.00325 * 15 13 8 44 44 H 0.96997 * 120.00463 * 359.97438 * 16 15 13 45 45 H 0.96999 * 119.99556 * 180.02562 * 20 19 17 46 46 H 1.08992 * 109.47303 * 299.99871 * 25 4 3 47 47 H 1.09002 * 109.47153 * 60.00359 * 25 4 3 48 48 H 1.08996 * 109.47407 * 299.99780 * 26 25 4 49 49 H 1.09000 * 109.46986 * 180.02562 * 26 25 4 50 50 H 1.09001 * 109.47367 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.47108 * 59.99711 * 27 26 25 52 52 H 1.08996 * 109.46524 * 299.99880 * 28 27 26 53 53 H 1.08992 * 109.47199 * 180.02562 * 28 27 26 54 54 H 1.09000 * 109.46925 * 180.02562 * 29 28 27 55 55 H 1.08996 * 109.47340 * 60.00744 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9806 0.4367 -1.2295 6 8 4.7226 0.9691 -2.0277 7 7 3.5542 -0.8240 -1.4428 8 6 3.9866 -1.5510 -2.6390 9 1 5.0062 -1.2728 -2.9055 10 6 3.0268 -1.2750 -3.8148 11 6 2.8871 -2.5980 -4.5880 12 6 3.7674 -3.6316 -3.8555 13 6 3.8834 -3.0795 -2.4112 14 1 2.9931 -3.3245 -1.8320 15 6 5.1427 -3.6114 -1.7240 16 7 4.9670 -5.0326 -1.4150 17 6 5.9702 -5.7273 -0.7935 18 1 6.8911 -5.2276 -0.5316 19 6 5.8036 -7.0738 -0.5002 20 7 4.6810 -7.6827 -0.8190 21 14 7.1724 -8.0216 0.3468 22 1 7.4625 -7.4007 1.6643 23 1 6.7484 -9.4306 0.5469 24 1 8.3940 -7.9867 -0.4966 25 6 3.9864 0.4256 1.2502 26 6 5.5117 0.3054 1.2510 27 6 6.1335 1.7033 1.2514 28 6 5.6825 2.4625 0.0019 29 6 4.1573 2.5827 0.0010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 2.9612 -1.2499 -0.8043 36 1 2.0545 -0.9590 -3.4368 37 1 3.4432 -0.5046 -4.4638 38 1 1.8471 -2.9241 -4.5853 39 1 3.2354 -2.4700 -5.6129 40 1 3.2856 -4.6093 -3.8528 41 1 4.7518 -3.6915 -4.3195 42 1 5.9987 -3.4870 -2.3873 43 1 5.3145 -3.0574 -0.8011 44 1 4.1398 -5.4814 -1.6498 45 1 4.5645 -8.6236 -0.6137 46 1 3.6645 0.9666 2.1399 47 1 3.5431 -0.5702 1.2501 48 1 5.8340 -0.2354 0.3613 49 1 5.8329 -0.2358 2.1410 50 1 7.2201 1.6176 1.2524 51 1 5.8111 2.2441 2.1412 52 1 6.0048 1.9216 -0.8879 53 1 6.1258 3.4582 0.0019 54 1 3.8359 3.1231 -0.8894 55 1 3.8349 3.1235 0.8907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482677331.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:11 Heat of formation + Delta-G solvation = -122.500825 kcal Electronic energy + Delta-G solvation = -32180.792795 eV Core-core repulsion = 28215.663075 eV Total energy + Delta-G solvation = -3965.129720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91482 -39.82623 -38.58753 -37.76321 -36.28458 -34.70953 -33.31512 -33.05699 -31.60241 -30.20394 -28.60042 -27.96805 -26.36369 -26.04484 -24.30940 -23.58088 -23.50425 -21.77027 -21.48795 -21.02188 -20.05832 -19.11604 -17.70339 -17.53580 -17.12860 -16.93314 -16.60687 -16.46232 -16.06992 -15.72190 -15.46490 -15.17976 -15.11209 -14.99740 -14.86996 -14.69118 -14.47051 -14.17183 -13.57600 -13.55676 -13.14224 -13.10771 -13.07815 -12.97213 -12.87005 -12.79063 -12.70540 -12.37343 -12.18945 -12.13595 -12.06728 -11.97093 -11.88996 -11.61892 -11.59904 -11.54000 -11.30652 -11.08707 -11.01411 -10.92812 -10.60836 -10.38090 -9.83218 -9.00067 -7.95068 -5.23658 1.46316 1.49165 1.55440 1.73456 2.30316 2.55490 2.76685 3.37433 3.47302 3.63832 3.64354 3.69997 3.83154 3.92029 4.02620 4.16209 4.20684 4.26883 4.36734 4.41231 4.47075 4.48319 4.51292 4.55612 4.57539 4.58663 4.60895 4.63710 4.67175 4.68151 4.73596 4.76019 4.91509 4.94680 4.95918 5.01855 5.04380 5.12759 5.14297 5.22727 5.23671 5.26967 5.28745 5.30126 5.38704 5.39463 5.45469 5.50338 5.60927 5.78033 6.20674 6.26890 6.73868 7.33856 7.41325 8.08024 8.34541 9.27988 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003549 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.735894 B = 7886.844075 C = 8907.564626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.075 3.925 4 C -0.071 4.071 5 C 0.525 3.475 6 O -0.577 6.577 7 N -0.702 5.702 8 C 0.152 3.848 9 H 0.068 0.932 10 C -0.120 4.120 11 C -0.111 4.111 12 C -0.110 4.110 13 C -0.090 4.090 14 H 0.079 0.921 15 C 0.167 3.833 16 N -0.738 5.738 17 C -0.249 4.249 18 H 0.068 0.932 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.971 3.029 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.097 4.097 26 C -0.126 4.126 27 C -0.113 4.113 28 C -0.132 4.132 29 C -0.086 4.086 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.376 0.624 45 H 0.252 0.748 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.029 0.971 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.082 0.918 52 H 0.059 0.941 53 H 0.071 0.929 54 H 0.063 0.937 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 23.592 2.031 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.328 6.328 3 C -0.001 4.001 4 C -0.074 4.074 5 C 0.313 3.687 6 O -0.457 6.457 7 N -0.354 5.354 8 C 0.047 3.953 9 H 0.087 0.913 10 C -0.159 4.159 11 C -0.149 4.149 12 C -0.149 4.149 13 C -0.109 4.109 14 H 0.098 0.902 15 C 0.040 3.960 16 N -0.380 5.380 17 C -0.381 4.381 18 H 0.086 0.914 19 C -0.261 4.261 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.135 4.135 26 C -0.164 4.164 27 C -0.151 4.151 28 C -0.170 4.170 29 C -0.124 4.124 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.209 0.791 45 H 0.061 0.939 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.086 0.914 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.077 0.923 53 H 0.090 0.910 54 H 0.082 0.918 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.875 23.768 1.544 25.418 hybrid contribution 0.257 -1.227 0.419 1.322 sum -8.618 22.540 1.963 24.211 Atomic orbital electron populations 1.22866 0.79192 1.03585 1.00910 1.87726 1.21526 1.28010 1.95567 1.22547 0.90108 0.85232 1.02257 1.20984 0.95560 0.97462 0.93381 1.20806 0.79099 0.81677 0.87151 1.90590 1.37812 1.68606 1.48731 1.46145 1.49962 1.14396 1.24901 1.21657 0.98257 0.89776 0.85657 0.91349 1.22397 0.99401 0.97888 0.96165 1.22051 1.00322 0.93429 0.99102 1.22270 1.00103 0.98754 0.93726 1.22390 0.97777 0.93517 0.97228 0.90230 1.20664 0.95321 0.84418 0.95554 1.42448 1.17973 1.06147 1.71474 1.19540 0.96136 0.92550 1.29901 0.91403 1.25496 0.99745 0.97689 1.03191 1.69798 1.26791 1.10661 1.54345 0.85259 0.78748 0.77449 0.78593 1.20479 1.21732 1.20618 1.21508 0.95108 1.00531 0.96333 1.21578 0.96022 0.97864 1.00938 1.21520 0.99786 0.95049 0.98729 1.21718 0.95763 1.00777 0.98701 1.21303 0.95344 0.92604 1.03099 0.92459 0.93516 0.89244 0.92697 0.89498 0.75028 0.90785 0.91813 0.90506 0.90650 0.92071 0.92434 0.97245 0.97223 0.79146 0.93892 0.88477 0.91814 0.95219 0.91357 0.92641 0.89980 0.92287 0.91037 0.91831 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -7.34 7.53 -148.98 -1.12 -8.46 16 3 C 0.08 1.17 4.79 71.98 0.35 1.52 16 4 C -0.07 -1.42 0.52 -52.93 -0.03 -1.44 16 5 C 0.53 14.54 4.96 87.66 0.43 14.98 16 6 O -0.58 -19.55 13.34 -3.06 -0.04 -19.59 16 7 N -0.70 -19.51 4.64 -437.44 -2.03 -21.54 16 8 C 0.15 4.58 2.63 46.06 0.12 4.71 16 9 H 0.07 2.38 7.51 -2.39 -0.02 2.37 16 10 C -0.12 -3.03 6.54 31.32 0.20 -2.82 16 11 C -0.11 -2.69 6.80 31.32 0.21 -2.48 16 12 C -0.11 -3.46 6.21 31.73 0.20 -3.27 16 13 C -0.09 -3.03 2.51 -9.45 -0.02 -3.05 16 14 H 0.08 2.71 8.02 -2.39 -0.02 2.69 16 15 C 0.17 7.18 5.70 86.38 0.49 7.67 16 16 N -0.74 -38.64 5.53 -343.45 -1.90 -40.54 16 17 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 18 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 21 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 C -0.10 -1.93 4.49 30.59 0.14 -1.80 16 26 C -0.13 -2.97 5.70 30.59 0.17 -2.79 16 27 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 28 C -0.13 -2.82 5.63 30.59 0.17 -2.64 16 29 C -0.09 -1.53 4.37 30.59 0.13 -1.39 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.41 11.03 5.93 -92.71 -0.55 10.48 16 36 H 0.07 1.74 8.04 -2.39 -0.02 1.72 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.91 7.94 -2.39 -0.02 1.90 16 42 H 0.01 0.43 7.99 -2.39 -0.02 0.41 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.38 20.58 7.67 -92.71 -0.71 19.87 16 45 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.06 1.45 7.10 -2.39 -0.02 1.44 16 48 H 0.03 0.89 7.22 -2.39 -0.02 0.87 16 49 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 52 H 0.06 1.71 5.51 -2.39 -0.01 1.70 16 53 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 54 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 55 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.21 415.70 2.13 -67.09 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: -0.41 Total: 43.52 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.31 Total: -10.34 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -3.64 Total: -121.11 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.16 Total: -28.05 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -69.21 2.13 -67.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482677331.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.414 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds