Wall clock time and date at job start Tue Mar 31 2020 22:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00154 * 2 1 4 4 C 1.52995 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47209 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47035 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00052 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99744 * 179.97438 * 6 5 4 9 9 C 1.46930 * 120.63149 * 359.72644 * 8 6 5 10 10 C 1.53628 * 108.53976 * 126.36431 * 9 8 6 11 11 C 1.53034 * 109.24081 * 54.85787 * 10 9 8 12 12 C 1.53035 * 109.53852 * 298.50326 * 11 10 9 13 13 H 1.08995 * 109.53119 * 301.40019 * 12 11 10 14 14 C 1.53005 * 109.49617 * 181.31924 * 12 11 10 15 15 C 1.53051 * 109.45862 * 180.19200 * 14 12 11 16 16 C 1.53188 * 109.30960 * 178.59944 * 15 14 12 17 17 N 1.46929 * 108.76661 * 54.66104 * 16 15 14 18 18 C 1.36930 * 120.63619 * 126.40004 * 17 16 15 19 19 H 1.08001 * 120.00420 * 207.66103 * 18 17 16 20 20 C 1.38814 * 119.99937 * 27.66690 * 18 17 16 21 21 N 1.31617 * 120.00066 * 17.35880 * 20 18 17 22 22 Si 1.86807 * 119.99879 * 197.36737 * 20 18 17 23 23 H 1.48496 * 109.47108 * 59.99944 * 22 20 18 24 24 H 1.48503 * 109.46822 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47033 * 299.99519 * 22 20 18 26 26 C 1.46932 * 118.73595 * 306.37889 * 17 16 15 27 27 C 1.53038 * 109.46221 * 60.13748 * 14 12 11 28 28 C 1.46931 * 120.62880 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.46588 * 60.00102 * 1 2 3 30 30 H 1.08998 * 109.47383 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47256 * 300.00348 * 1 2 3 32 32 H 1.08999 * 109.46948 * 300.00168 * 3 2 1 33 33 H 1.09002 * 109.47108 * 59.99745 * 3 2 1 34 34 H 1.08995 * 109.47439 * 300.00348 * 4 3 2 35 35 H 1.09002 * 109.46757 * 60.00224 * 4 3 2 36 36 H 1.09000 * 109.46687 * 300.00615 * 5 4 3 37 37 H 1.09002 * 109.46916 * 60.00520 * 5 4 3 38 38 H 1.09000 * 109.58313 * 246.19498 * 9 8 6 39 39 H 1.08994 * 109.58038 * 6.62321 * 9 8 6 40 40 H 1.08994 * 109.63301 * 294.86172 * 10 9 8 41 41 H 1.09002 * 109.44979 * 174.74070 * 10 9 8 42 42 H 1.09005 * 109.45573 * 178.48795 * 11 10 9 43 43 H 1.09003 * 109.45453 * 58.52396 * 11 10 9 44 44 H 1.09000 * 109.46004 * 300.16119 * 14 12 11 45 45 H 1.09003 * 109.49361 * 298.56903 * 15 14 12 46 46 H 1.08993 * 109.49610 * 58.66358 * 15 14 12 47 47 H 1.08993 * 109.60561 * 294.86929 * 16 15 14 48 48 H 1.08997 * 109.58286 * 174.43106 * 16 15 14 49 49 H 0.96995 * 119.99968 * 180.02562 * 21 20 18 50 50 H 1.09005 * 109.58421 * 293.82340 * 26 17 16 51 51 H 1.08998 * 109.58759 * 173.39578 * 26 17 16 52 52 H 1.09001 * 109.49872 * 301.33755 * 27 14 12 53 53 H 1.09001 * 109.49571 * 61.39696 * 27 14 12 54 54 H 1.08999 * 109.58517 * 353.37511 * 28 8 6 55 55 H 1.09000 * 109.58313 * 113.66117 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 0.0000 7 8 6.1816 1.3683 0.0000 8 7 6.4240 3.5736 -0.0010 9 6 5.8068 4.9070 -0.0082 10 6 6.3808 5.7173 1.1640 11 6 7.9080 5.7315 1.0673 12 6 8.4404 4.3001 1.1655 13 1 8.1210 3.8564 2.1084 14 6 9.9691 4.3183 1.1017 15 6 10.5004 2.8861 1.1951 16 6 12.0289 2.9053 1.0958 17 7 12.5579 3.8130 2.1229 18 6 13.5094 3.3846 3.0097 19 1 13.5781 3.8365 3.9882 20 6 14.3856 2.3696 2.6508 21 7 14.5424 2.0531 1.3829 22 14 15.3422 1.4526 3.9676 23 1 14.3931 0.7940 4.9007 24 1 16.2018 0.4238 3.3288 25 1 16.1916 2.4105 4.7198 26 6 12.0470 5.1894 2.1802 27 6 10.5182 5.1447 2.2669 28 6 7.8899 3.4737 -0.0016 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.8568 0.6438 0.8908 35 1 3.8574 0.6435 -0.8892 36 1 3.8364 3.1227 -0.8904 37 1 3.8359 3.1238 0.8896 38 1 6.0332 5.4093 -0.9487 39 1 4.7273 4.8104 0.1064 40 1 6.0802 5.2606 2.1069 41 1 6.0038 6.7390 1.1181 42 1 8.3179 6.3281 1.8823 43 1 8.2074 6.1657 0.1133 44 1 10.2879 4.7631 0.1590 45 1 10.2029 2.4492 2.1485 46 1 10.0904 2.2920 0.3785 47 1 12.3268 3.2576 0.1084 48 1 12.4184 1.9007 1.2605 49 1 15.1544 1.3436 1.1323 50 1 12.3463 5.7280 1.2810 51 1 12.4483 5.6919 3.0603 52 1 10.1209 6.1583 2.2132 53 1 10.2201 4.6866 3.2100 54 1 8.1851 2.4312 0.1174 55 1 8.2821 3.8594 -0.9427 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484325466.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:49 Heat of formation + Delta-G solvation = -104.674105 kcal Electronic energy + Delta-G solvation = -30389.520701 eV Core-core repulsion = 26425.164006 eV Total energy + Delta-G solvation = -3964.356695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39971 -39.84743 -38.86131 -38.06726 -35.67514 -34.66989 -33.64380 -32.90078 -31.45457 -30.77414 -28.90943 -27.15540 -26.81916 -25.86775 -24.57483 -23.75327 -22.70774 -22.60156 -21.15331 -20.71253 -19.83024 -18.68698 -18.21217 -17.40433 -17.32905 -16.87913 -16.57438 -16.42227 -15.84061 -15.76212 -15.48221 -15.31298 -15.25884 -15.01461 -14.62593 -14.53074 -14.48125 -14.11115 -13.86726 -13.75916 -13.49549 -13.12644 -13.03785 -12.98977 -12.79805 -12.59756 -12.58991 -12.47495 -12.26925 -12.07083 -11.96870 -11.92608 -11.88167 -11.82743 -11.73783 -11.52319 -11.37069 -11.05404 -10.81714 -10.71439 -10.59202 -10.53146 -9.58217 -8.68255 -7.88258 -5.33145 1.42862 1.46671 1.52875 1.63986 1.99336 2.49500 2.87323 3.25448 3.54227 3.69404 3.75031 3.81211 3.94306 3.98165 4.12122 4.14427 4.20926 4.22926 4.32528 4.42148 4.44994 4.48152 4.51768 4.52754 4.55642 4.59460 4.61991 4.65075 4.71413 4.76304 4.83162 4.87184 4.88162 4.91789 4.95574 5.03526 5.09570 5.11075 5.12738 5.19646 5.25231 5.31731 5.36832 5.41830 5.44397 5.50538 5.57278 5.60943 5.65816 5.78016 6.28003 6.38026 6.47113 7.13703 7.20524 7.86897 8.38257 9.17594 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.002193 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.936700 B =12762.161066 C =14028.645933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.064 3.936 4 C -0.104 4.104 5 C -0.122 4.122 6 C 0.501 3.499 7 O -0.597 6.597 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.129 4.129 11 C -0.115 4.115 12 C -0.080 4.080 13 H 0.054 0.946 14 C -0.062 4.062 15 C -0.123 4.123 16 C 0.178 3.822 17 N -0.611 5.611 18 C -0.263 4.263 19 H 0.066 0.934 20 C -0.055 4.055 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.138 3.862 27 C -0.112 4.112 28 C 0.116 3.884 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.055 0.945 47 H -0.004 1.004 48 H 0.046 0.954 49 H 0.249 0.751 50 H 0.015 0.985 51 H 0.052 0.948 52 H 0.091 0.909 53 H 0.046 0.954 54 H 0.059 0.941 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.030 10.194 -4.237 32.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.162 4.162 6 C 0.291 3.709 7 O -0.478 6.478 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.167 4.167 11 C -0.153 4.153 12 C -0.099 4.099 13 H 0.072 0.928 14 C -0.081 4.081 15 C -0.162 4.162 16 C 0.052 3.948 17 N -0.335 5.335 18 C -0.393 4.393 19 H 0.084 0.916 20 C -0.250 4.250 21 N -0.582 5.582 22 Si 0.794 3.206 23 H -0.208 1.208 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.013 3.987 27 C -0.150 4.150 28 C -0.007 4.007 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.014 0.986 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.033 0.967 51 H 0.070 0.930 52 H 0.109 0.891 53 H 0.065 0.935 54 H 0.078 0.922 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.548 9.378 -4.300 32.243 hybrid contribution 1.320 -1.035 0.492 1.748 sum -29.227 8.343 -3.808 30.632 Atomic orbital electron populations 1.22919 0.79304 1.03634 1.01144 1.87860 1.21709 1.29516 1.95689 1.22595 0.92274 0.84345 1.02003 1.21179 0.93967 0.96560 1.02547 1.21577 0.88524 0.98788 1.07270 1.21457 0.91315 0.83252 0.74877 1.90717 1.76247 1.28630 1.52170 1.48309 1.06217 1.07380 1.72337 1.22237 0.99373 0.80704 0.99877 1.21994 0.94799 1.01713 0.98238 1.21646 0.96161 0.94303 1.03153 1.21392 0.93721 0.97370 0.97440 0.92752 1.20932 0.93817 0.94568 0.98815 1.22066 0.96887 0.97521 0.99760 1.20543 0.90271 0.94575 0.89379 1.44321 1.44642 1.07854 1.36694 1.19495 1.08061 1.17673 0.94099 0.91632 1.25816 0.98856 1.02724 0.97572 1.70186 1.39286 1.32497 1.16235 0.85356 0.78162 0.78326 0.78735 1.20750 1.22012 1.19693 1.21114 0.93756 0.85533 0.98297 1.21934 0.95397 1.00211 0.97486 1.21575 0.79834 1.00660 0.98665 0.92732 0.89231 0.92842 0.91092 0.91322 0.93081 0.92778 0.85352 0.85695 0.89665 0.86579 0.92088 0.87769 0.90718 0.90925 0.91615 0.94410 0.92636 0.98622 0.93596 0.94198 0.96701 0.92984 0.89104 0.93533 0.92244 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.95 10.70 -148.98 -1.59 -9.54 16 3 C 0.06 0.82 5.94 71.98 0.43 1.25 16 4 C -0.10 -1.89 4.87 30.59 0.15 -1.74 16 5 C -0.12 -1.55 4.05 29.85 0.12 -1.43 16 6 C 0.50 11.87 7.70 87.66 0.67 12.55 16 7 O -0.60 -21.20 15.39 -3.03 -0.05 -21.25 16 8 N -0.61 -12.36 2.97 -817.97 -2.43 -14.78 16 9 C 0.10 1.00 6.37 86.51 0.55 1.55 16 10 C -0.13 -1.39 6.10 30.82 0.19 -1.21 16 11 C -0.12 -1.92 4.85 30.62 0.15 -1.78 16 12 C -0.08 -1.99 1.93 -10.70 -0.02 -2.01 16 13 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 14 C -0.06 -1.98 1.74 -10.76 -0.02 -2.00 16 15 C -0.12 -5.05 5.05 30.67 0.15 -4.89 16 16 C 0.18 9.19 5.31 86.36 0.46 9.65 16 17 N -0.61 -32.16 2.99 -699.10 -2.09 -34.25 16 18 C -0.26 -15.14 9.59 84.04 0.81 -14.33 16 19 H 0.07 3.66 7.89 -2.91 -0.02 3.63 16 20 C -0.05 -3.19 4.91 84.86 0.42 -2.78 16 21 N -0.94 -58.02 11.19 21.65 0.24 -57.78 16 22 Si 0.97 46.91 29.59 68.60 2.03 48.94 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 26 C 0.14 5.80 6.52 86.36 0.56 6.36 16 27 C -0.11 -3.62 5.05 30.67 0.15 -3.47 16 28 C 0.12 3.02 5.19 86.38 0.45 3.47 16 29 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.13 0.78 7.93 -2.39 -0.02 0.76 16 37 H 0.13 0.87 7.70 -2.39 -0.02 0.85 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.12 0.42 5.93 -2.39 -0.01 0.41 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 42 H 0.07 1.24 6.33 -2.38 -0.02 1.22 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 2.17 6.49 -2.39 -0.02 2.16 16 47 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 48 H 0.05 2.71 6.04 -2.39 -0.01 2.70 16 49 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 50 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 52 H 0.09 2.27 6.34 -2.39 -0.02 2.25 16 53 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.06 2.01 5.59 -2.39 -0.01 2.00 16 55 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -80.04 413.26 3.41 -76.62 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.83 Total: 11.32 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.47 Total: 0.73 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.28 Total: -106.81 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.64 Total: -30.79 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -80.04 3.41 -76.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484325466.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.053 kcal (2) G-P(sol) polarization free energy of solvation -80.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds