Wall clock time and date at job start Tue Mar 31 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36942 * 120.00059 * 2 1 4 4 H 1.08002 * 119.99886 * 202.34615 * 3 2 1 5 5 C 1.38812 * 119.99825 * 22.35123 * 3 2 1 6 6 N 1.31626 * 119.99977 * 11.33516 * 5 3 2 7 7 Si 1.86794 * 120.00053 * 191.34581 * 5 3 2 8 8 H 1.48496 * 109.47482 * 89.99296 * 7 5 3 9 9 H 1.48497 * 109.47205 * 209.99854 * 7 5 3 10 10 H 1.48503 * 109.47064 * 329.99356 * 7 5 3 11 11 C 1.46501 * 120.00179 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47236 * 269.99988 * 11 2 1 13 13 C 1.52999 * 109.47233 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.47361 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00157 * 270.00527 * 14 13 12 16 16 C 1.34781 * 119.99377 * 89.99890 * 14 13 12 17 17 O 1.21282 * 120.00387 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.99452 * 180.02562 * 16 14 13 19 19 C 1.52997 * 109.47094 * 180.02562 * 18 16 14 20 20 H 1.08999 * 109.43977 * 54.99545 * 19 18 16 21 21 C 1.53070 * 109.43773 * 174.91271 * 19 18 16 22 22 C 1.53268 * 109.13106 * 179.47166 * 21 19 18 23 23 C 1.52848 * 108.72216 * 305.11147 * 22 21 19 24 24 C 1.53329 * 113.58508 * 184.26677 * 23 22 21 25 25 C 1.53862 * 86.95541 * 89.49080 * 24 23 22 26 26 C 1.53357 * 113.55629 * 282.25469 * 23 22 21 27 27 C 1.52751 * 112.67294 * 53.22001 * 23 22 21 28 28 O 1.42858 * 109.43547 * 295.08635 * 19 18 16 29 29 H 1.08999 * 109.47492 * 274.20506 * 1 2 3 30 30 H 1.09002 * 109.47800 * 34.21070 * 1 2 3 31 31 H 1.09006 * 109.46932 * 154.20811 * 1 2 3 32 32 H 0.96996 * 119.99839 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47163 * 150.00199 * 11 2 1 34 34 H 1.09000 * 109.47200 * 30.00114 * 11 2 1 35 35 H 1.09001 * 109.47343 * 60.00245 * 12 11 2 36 36 H 1.09002 * 109.47524 * 299.99817 * 12 11 2 37 37 H 1.09003 * 109.47005 * 60.00311 * 13 12 11 38 38 H 1.09000 * 109.47362 * 300.00223 * 13 12 11 39 39 H 1.09002 * 109.46787 * 269.99284 * 15 14 13 40 40 H 1.08994 * 109.47427 * 29.99654 * 15 14 13 41 41 H 1.08997 * 109.47234 * 149.99765 * 15 14 13 42 42 H 1.08997 * 109.47225 * 59.99766 * 18 16 14 43 43 H 1.09007 * 109.47247 * 299.99876 * 18 16 14 44 44 H 1.08998 * 109.53489 * 299.30780 * 21 19 18 45 45 H 1.08997 * 109.53623 * 59.55101 * 21 19 18 46 46 H 1.09000 * 109.59650 * 185.33928 * 22 21 19 47 47 H 1.08996 * 109.72772 * 64.95557 * 22 21 19 48 48 H 1.09000 * 113.63524 * 204.00673 * 24 23 22 49 49 H 1.08996 * 113.63496 * 334.97345 * 24 23 22 50 50 H 1.08996 * 113.60265 * 270.53944 * 25 24 23 51 51 H 1.09005 * 113.60105 * 139.68207 * 25 24 23 52 52 H 1.08998 * 113.63206 * 24.99904 * 26 23 22 53 53 H 1.09001 * 113.63354 * 155.96551 * 26 23 22 54 54 H 1.09005 * 109.52832 * 186.47384 * 27 23 22 55 55 H 1.08996 * 109.58555 * 66.29843 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5338 2.3429 0.4572 6 7 0.3840 2.2690 1.0936 7 14 2.3365 4.0047 0.1689 8 1 1.8678 4.5632 -1.1248 9 1 1.9681 4.9302 1.2702 10 1 3.8122 3.8419 0.1321 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2170 -3.0363 1.4411 14 7 3.4617 -3.4596 2.8221 15 6 4.6830 -3.0372 3.5122 16 6 2.5631 -4.2375 3.4577 17 8 1.5522 -4.5875 2.8863 18 6 2.8146 -4.6725 4.8785 19 6 1.6506 -5.5411 5.3596 20 1 1.5087 -6.3723 4.6689 21 6 1.9646 -6.0864 6.7550 22 6 0.7890 -6.9444 7.2353 23 6 -0.4894 -6.1097 7.1626 24 6 -1.7243 -6.8294 7.7176 25 6 -1.3569 -6.2302 9.0863 26 6 -0.6354 -5.1103 8.3166 27 6 -0.7099 -5.4892 5.7843 28 8 0.4590 -4.7548 5.4081 29 1 -0.3634 0.0754 1.0249 30 1 -0.3635 0.8498 -0.5778 31 1 -0.3633 -0.9253 -0.4472 32 1 -0.0461 3.0774 1.4134 33 1 3.1499 -1.1381 -0.5143 34 1 1.6084 -2.0282 -0.5148 35 1 1.5001 -1.8417 1.9555 36 1 3.0416 -0.9516 1.9559 37 1 4.1694 -2.9061 0.9272 38 1 2.6276 -3.7956 0.9270 39 1 5.4698 -3.7718 3.3405 40 1 5.0006 -2.0679 3.1282 41 1 4.4872 -2.9579 4.5815 42 1 2.9010 -3.7937 5.5176 43 1 3.7396 -5.2473 4.9243 44 1 2.8668 -6.6967 6.7133 45 1 2.1162 -5.2564 7.4450 46 1 0.9623 -7.2587 8.2645 47 1 0.6891 -7.8222 6.5969 48 1 -2.6658 -6.4553 7.3153 49 1 -1.6495 -7.9162 7.6821 50 1 -0.6867 -6.8590 9.6723 51 1 -2.2188 -5.8828 9.6561 52 1 0.3147 -4.8157 8.7622 53 1 -1.2752 -4.2601 8.0801 54 1 -1.5668 -4.8164 5.8205 55 1 -0.8957 -6.2770 5.0544 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484764299.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:59 Heat of formation + Delta-G solvation = -67.787587 kcal Electronic energy + Delta-G solvation = -30552.530096 eV Core-core repulsion = 26589.772920 eV Total energy + Delta-G solvation = -3962.757176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.59256 -40.72460 -38.32033 -37.82628 -36.58526 -34.42249 -33.93713 -32.41499 -31.49751 -28.89270 -28.09732 -27.79901 -26.75743 -26.58530 -25.27064 -24.05943 -23.26252 -22.02566 -21.84372 -20.03674 -19.24698 -18.77736 -17.92810 -17.62351 -17.29865 -16.76687 -16.55329 -16.51589 -16.25553 -15.82013 -15.60067 -15.23879 -14.96183 -14.80896 -14.73942 -14.33408 -14.15767 -13.94636 -13.74614 -13.56490 -13.28279 -13.24909 -13.19508 -13.09449 -12.87599 -12.70258 -12.56968 -12.50674 -12.40079 -12.27470 -12.09286 -12.03370 -12.01427 -11.87912 -11.87027 -11.43891 -11.41442 -11.06555 -10.95325 -10.74129 -10.64711 -10.11439 -9.61661 -8.80053 -7.82528 -5.31891 1.45366 1.47804 1.56560 1.72535 2.13431 2.51142 2.83584 3.31369 3.53846 3.63584 3.63746 3.67574 3.69167 3.87431 3.96909 4.03711 4.13571 4.16157 4.23685 4.34841 4.39290 4.44269 4.51514 4.55012 4.56027 4.61597 4.69767 4.71497 4.75496 4.78435 4.80367 4.83053 4.84084 4.87745 4.90422 4.92714 4.98824 5.05419 5.06090 5.09770 5.17168 5.25188 5.26909 5.35452 5.43297 5.44880 5.58531 5.62603 5.64922 5.66817 6.32309 6.37210 6.51011 7.13217 7.29217 7.85328 8.31744 9.22146 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.002349 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.339815 B =11919.437028 C =12839.117931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.622 5.622 3 C -0.259 4.259 4 H 0.078 0.922 5 C -0.062 4.062 6 N -0.945 5.945 7 Si 0.975 3.025 8 H -0.286 1.286 9 H -0.297 1.297 10 H -0.263 1.263 11 C 0.152 3.848 12 C -0.128 4.128 13 C 0.127 3.873 14 N -0.621 5.621 15 C 0.071 3.929 16 C 0.500 3.500 17 O -0.580 6.580 18 C -0.125 4.125 19 C 0.101 3.899 20 H 0.046 0.954 21 C -0.140 4.140 22 C -0.093 4.093 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.129 4.129 27 C 0.076 3.924 28 O -0.396 6.396 29 H -0.006 1.006 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.246 0.754 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.013 0.987 36 H 0.043 0.957 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.145 0.855 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.070 0.930 52 H 0.068 0.932 53 H 0.067 0.933 54 H 0.081 0.919 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 -22.622 16.570 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.346 5.346 3 C -0.389 4.389 4 H 0.096 0.904 5 C -0.256 4.256 6 N -0.592 5.592 7 Si 0.803 3.197 8 H -0.213 1.213 9 H -0.224 1.224 10 H -0.187 1.187 11 C 0.026 3.974 12 C -0.169 4.169 13 C 0.003 3.997 14 N -0.354 5.354 15 C -0.071 4.071 16 C 0.290 3.710 17 O -0.460 6.460 18 C -0.164 4.164 19 C 0.043 3.957 20 H 0.064 0.936 21 C -0.177 4.177 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.166 4.166 25 C -0.169 4.169 26 C -0.166 4.166 27 C -0.001 4.001 28 O -0.316 6.316 29 H 0.012 0.988 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.163 0.837 44 H 0.119 0.881 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.111 0.889 51 H 0.089 0.911 52 H 0.087 0.913 53 H 0.086 0.914 54 H 0.099 0.901 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.914 -22.485 16.268 28.601 hybrid contribution -0.488 1.243 -0.228 1.355 sum 6.425 -21.242 16.040 27.383 Atomic orbital electron populations 1.20481 0.83303 0.95679 0.97030 1.44268 1.02013 1.02173 1.86097 1.19620 0.98277 0.86318 1.34691 0.90423 1.25930 0.98554 1.02315 0.98810 1.70292 1.19574 1.27386 1.41968 0.85139 0.78585 0.79268 0.76699 1.21279 1.22363 1.18718 1.20928 0.96119 0.86494 0.93877 1.22275 0.98197 0.96587 0.99858 1.21364 1.00893 0.94711 0.82703 1.48102 1.22454 1.50313 1.14529 1.22073 0.85342 1.01404 0.98249 1.21322 0.82180 0.77820 0.89666 1.90682 1.28458 1.57797 1.69039 1.21863 1.00410 1.02754 0.91423 1.21885 0.84524 0.92767 0.96527 0.93609 1.22166 0.99649 1.00662 0.95239 1.21353 0.91945 0.97030 1.02742 1.22262 0.97411 0.97873 0.94294 1.22862 0.96739 1.00365 0.96678 1.22832 1.00556 0.97501 0.95976 1.22855 1.00902 0.96590 0.96257 1.22534 0.87708 0.95366 0.94468 1.87997 1.16861 1.37061 1.89632 0.98785 0.95974 0.95921 0.94457 0.91925 0.93346 0.96767 0.93854 0.87892 0.91620 0.89586 0.91126 0.89503 0.87322 0.83745 0.88107 0.90665 0.89368 0.91378 0.90358 0.90354 0.88924 0.91137 0.91283 0.91401 0.90120 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.99 9.01 127.77 1.15 11.14 16 2 N -0.62 -33.76 2.93 -726.95 -2.13 -35.89 16 3 C -0.26 -14.77 9.67 84.03 0.81 -13.95 16 4 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 5 C -0.06 -3.62 5.13 84.86 0.44 -3.18 16 6 N -0.94 -59.20 10.59 21.65 0.23 -58.97 16 7 Si 0.98 46.32 29.57 68.60 2.03 48.35 16 8 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 9 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 C 0.15 6.59 5.71 86.38 0.49 7.08 16 12 C -0.13 -5.26 5.86 30.59 0.18 -5.08 16 13 C 0.13 3.93 5.41 86.38 0.47 4.40 16 14 N -0.62 -16.93 2.87 -846.75 -2.43 -19.36 16 15 C 0.07 1.22 10.24 127.77 1.31 2.53 16 16 C 0.50 15.25 7.55 87.66 0.66 15.91 16 17 O -0.58 -23.62 14.99 10.87 0.16 -23.46 16 18 C -0.13 -2.50 3.96 29.85 0.12 -2.39 16 19 C 0.10 2.25 2.13 30.62 0.07 2.32 16 20 H 0.05 1.15 7.95 -2.39 -0.02 1.13 16 21 C -0.14 -1.97 5.34 30.71 0.16 -1.80 16 22 C -0.09 -1.28 5.11 30.63 0.16 -1.12 16 23 C -0.12 -2.05 0.86 -52.09 -0.04 -2.09 16 24 C -0.13 -1.83 7.23 31.00 0.22 -1.61 16 25 C -0.13 -1.66 7.73 31.17 0.24 -1.42 16 26 C -0.13 -2.17 7.13 31.00 0.22 -1.95 16 27 C 0.08 1.88 6.02 71.90 0.43 2.32 16 28 O -0.40 -11.95 9.64 -135.07 -1.30 -13.25 16 29 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 30 H 0.02 1.27 7.19 -2.39 -0.02 1.26 16 31 H 0.02 1.10 7.84 -2.38 -0.02 1.08 16 32 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.06 2.45 8.03 -2.39 -0.02 2.43 16 34 H 0.05 1.97 7.86 -2.39 -0.02 1.95 16 35 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 2.52 8.07 -2.39 -0.02 2.51 16 38 H 0.07 2.21 7.42 -2.39 -0.02 2.19 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.31 8.07 -2.39 -0.02 1.29 16 41 H 0.09 1.18 6.44 -2.39 -0.02 1.16 16 42 H 0.11 2.02 7.40 -2.39 -0.02 2.00 16 43 H 0.14 1.60 8.11 -2.38 -0.02 1.58 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 46 H 0.09 0.90 7.34 -2.39 -0.02 0.88 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 49 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 50 H 0.09 0.92 7.64 -2.39 -0.02 0.90 16 51 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 52 H 0.07 1.12 7.62 -2.39 -0.02 1.10 16 53 H 0.07 1.33 8.03 -2.39 -0.02 1.31 16 54 H 0.08 2.07 8.05 -2.38 -0.02 2.05 16 55 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -80.09 423.49 4.47 -75.62 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.82 Total: 15.85 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.09 Total: 11.11 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.33 Total: -114.21 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.14 Total: -36.71 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -80.09 4.47 -75.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484764299.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.830 kcal (2) G-P(sol) polarization free energy of solvation -80.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds