Wall clock time and date at job start Tue Mar 31 2020 22:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00070 * 2 1 4 4 C 1.52997 * 109.47274 * 150.00092 * 3 2 1 5 5 C 1.53004 * 109.47162 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47285 * 300.00077 * 5 4 3 7 7 C 1.52999 * 109.46997 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47194 * 175.00231 * 7 6 5 9 9 O 1.21289 * 120.00094 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00376 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.62950 * 354.87757 * 10 8 7 12 12 C 1.53192 * 108.89493 * 126.33958 * 11 10 8 13 13 C 1.53358 * 109.14614 * 54.57731 * 12 11 10 14 14 C 1.53039 * 109.60704 * 298.70990 * 13 12 11 15 15 C 1.46930 * 120.62960 * 174.89676 * 10 8 7 16 16 H 1.08997 * 109.58135 * 113.80237 * 15 10 8 17 17 C 1.52995 * 109.58970 * 353.37272 * 15 10 8 18 18 N 1.46503 * 109.46768 * 73.19986 * 17 15 10 19 19 C 1.36936 * 119.99827 * 174.77180 * 18 17 15 20 20 H 1.08004 * 120.00074 * 359.97438 * 19 18 17 21 21 C 1.38817 * 120.00103 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99893 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00192 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47032 * 90.00000 * 23 21 19 25 25 H 1.48501 * 109.47528 * 209.99967 * 23 21 19 26 26 H 1.48506 * 109.47455 * 330.00065 * 23 21 19 27 27 C 1.52997 * 109.47083 * 59.99875 * 6 5 4 28 28 C 1.52999 * 109.47160 * 299.99846 * 27 6 5 29 29 H 1.08991 * 109.46941 * 60.00304 * 1 2 3 30 30 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47017 * 299.99952 * 1 2 3 32 32 H 1.09000 * 109.47206 * 29.99709 * 3 2 1 33 33 H 1.08992 * 109.47201 * 59.99996 * 4 3 2 34 34 H 1.09000 * 109.47301 * 299.99407 * 4 3 2 35 35 H 1.08999 * 109.47018 * 179.97438 * 5 4 3 36 36 H 1.09006 * 109.46676 * 60.00035 * 5 4 3 37 37 H 1.08992 * 109.47161 * 299.99778 * 6 5 4 38 38 H 1.08998 * 109.47506 * 55.00449 * 7 6 5 39 39 H 1.09005 * 109.47141 * 294.99506 * 7 6 5 40 40 H 1.09000 * 109.58453 * 246.20147 * 11 10 8 41 41 H 1.08997 * 109.58493 * 6.47929 * 11 10 8 42 42 H 1.09001 * 109.49867 * 174.65472 * 12 11 10 43 43 H 1.09000 * 109.49656 * 294.75620 * 12 11 10 44 44 H 1.08998 * 109.41502 * 178.67084 * 13 12 11 45 45 H 1.09000 * 109.41760 * 58.75424 * 13 12 11 46 46 H 1.08990 * 109.50000 * 301.42149 * 14 13 12 47 47 H 1.08998 * 109.52097 * 181.34296 * 14 13 12 48 48 H 1.08999 * 109.47436 * 193.19849 * 17 15 10 49 49 H 1.09001 * 109.47526 * 313.20603 * 17 15 10 50 50 H 0.97002 * 120.00129 * 354.77227 * 18 17 15 51 51 H 0.96991 * 120.00033 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.47317 * 60.00239 * 27 6 5 53 53 H 1.09003 * 109.47510 * 180.02562 * 27 6 5 54 54 H 1.08992 * 109.47130 * 300.00125 * 28 27 6 55 55 H 1.09007 * 109.47211 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 0.7212 5 6 3.9815 2.6608 0.7206 6 6 4.1890 3.1262 -0.7220 7 6 4.8110 4.5240 -0.7225 8 6 5.1284 4.9321 -2.1380 9 8 4.8819 4.1788 -3.0561 10 7 5.6872 6.1337 -2.3838 11 6 5.8900 7.1013 -1.2970 12 6 7.3599 7.5327 -1.2847 13 6 7.7425 8.0550 -2.6749 14 6 7.5725 6.9385 -3.7077 15 6 6.1048 6.5009 -3.7438 16 1 5.4873 7.3228 -4.1061 17 6 5.9523 5.2935 -4.6709 18 7 4.5312 5.0612 -4.9405 19 6 4.1528 4.0955 -5.8346 20 1 4.9021 3.5054 -6.3414 21 6 2.8062 3.8758 -6.0905 22 7 1.8931 4.5953 -5.4732 23 14 2.2901 2.5590 -7.3107 24 1 2.1104 1.2679 -6.5992 25 1 1.0101 2.9529 -7.9522 26 1 3.3395 2.4092 -8.3507 27 6 2.8403 3.1683 -1.4432 28 6 2.2178 1.7707 -1.4427 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3450 1.9993 0.5138 33 1 4.0241 0.5694 0.2074 34 1 3.2111 0.9314 1.7489 35 1 4.9421 2.6309 1.2348 36 1 3.3163 3.3551 1.2343 37 1 4.8540 2.4320 -1.2355 38 1 5.7278 4.5140 -0.1330 39 1 4.1076 5.2348 -0.2886 40 1 5.2550 7.9721 -1.4598 41 1 5.6372 6.6379 -0.3433 42 1 7.5017 8.3204 -0.5447 43 1 7.9877 6.6782 -1.0321 44 1 8.7812 8.3852 -2.6646 45 1 7.0974 8.8936 -2.9370 46 1 8.1985 6.0899 -3.4323 47 1 7.8674 7.3042 -4.6912 48 1 6.4731 5.4873 -5.6086 49 1 6.3802 4.4121 -4.1931 50 1 3.8582 5.5915 -4.4856 51 1 0.9522 4.4416 -5.6517 52 1 2.1752 3.8626 -0.9296 53 1 2.9881 3.4994 -2.4711 54 1 2.8828 1.0766 -1.9562 55 1 1.2571 1.8007 -1.9569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485041932.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:47 Heat of formation + Delta-G solvation = -77.226427 kcal Electronic energy + Delta-G solvation = -32380.862675 eV Core-core repulsion = 28417.696200 eV Total energy + Delta-G solvation = -3963.166475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.48698 -40.16752 -38.37233 -37.33270 -36.28599 -33.98739 -33.52260 -32.46078 -31.67276 -31.43844 -28.46600 -27.54606 -26.73207 -25.56644 -24.28353 -23.64120 -23.19302 -22.10387 -21.37463 -20.76486 -19.70150 -18.97802 -17.61125 -17.53145 -16.87617 -16.69835 -16.58908 -16.21210 -16.01582 -15.43192 -15.32619 -15.08669 -15.02744 -14.94300 -14.82624 -14.43112 -14.18625 -14.05607 -13.79772 -13.67460 -13.42940 -13.19031 -13.07912 -12.84655 -12.77598 -12.75622 -12.68652 -12.39512 -12.13552 -12.04198 -12.01588 -11.83787 -11.74589 -11.69057 -11.52501 -11.38518 -11.36020 -11.28110 -11.15977 -10.82353 -10.39503 -9.67180 -9.25125 -8.57444 -7.81039 -4.97398 1.39120 1.42726 1.48786 2.14826 2.29148 2.60980 2.80389 3.51449 3.68401 3.74492 3.83617 3.89328 3.91002 4.02025 4.10048 4.16788 4.20618 4.28847 4.39388 4.40043 4.44080 4.47660 4.48966 4.51864 4.54752 4.58530 4.61483 4.69229 4.71409 4.78523 4.83155 4.87845 4.90147 4.98496 5.04130 5.06696 5.10651 5.14045 5.16773 5.18926 5.23963 5.24654 5.29087 5.35290 5.36776 5.52327 5.55851 5.59908 5.72276 5.96163 6.26831 6.39340 6.83425 7.46825 7.78131 8.28712 8.52239 9.43010 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007900 B = 0.005040 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.543768 B = 5554.612242 C = 8632.865559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.095 3.905 4 C -0.110 4.110 5 C -0.098 4.098 6 C -0.063 4.063 7 C -0.120 4.120 8 C 0.461 3.539 9 O -0.500 6.500 10 N -0.617 5.617 11 C 0.103 3.897 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.148 3.852 16 H 0.051 0.949 17 C 0.168 3.832 18 N -0.697 5.697 19 C -0.203 4.203 20 H 0.055 0.945 21 C -0.077 4.077 22 N -0.965 5.965 23 Si 0.953 3.047 24 H -0.301 1.301 25 H -0.294 1.294 26 H -0.274 1.274 27 C -0.108 4.108 28 C -0.130 4.130 29 H 0.029 0.971 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.007 0.993 49 H 0.016 0.984 50 H 0.368 0.632 51 H 0.241 0.759 52 H 0.057 0.943 53 H 0.049 0.951 54 H 0.038 0.962 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 4.639 20.256 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.037 3.963 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.082 4.082 7 C -0.159 4.159 8 C 0.248 3.752 9 O -0.373 6.373 10 N -0.355 5.355 11 C -0.019 4.019 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.157 4.157 15 C 0.044 3.956 16 H 0.069 0.931 17 C 0.041 3.959 18 N -0.337 5.337 19 C -0.336 4.336 20 H 0.073 0.927 21 C -0.269 4.269 22 N -0.618 5.618 23 Si 0.785 3.215 24 H -0.230 1.230 25 H -0.221 1.221 26 H -0.199 1.199 27 C -0.145 4.145 28 C -0.168 4.168 29 H 0.048 0.952 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.025 0.975 49 H 0.034 0.966 50 H 0.200 0.800 51 H 0.050 0.950 52 H 0.075 0.925 53 H 0.068 0.932 54 H 0.057 0.943 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.589 3.910 19.614 21.766 hybrid contribution -1.299 -0.624 -1.513 2.090 sum 7.291 3.285 18.101 19.788 Atomic orbital electron populations 1.22935 0.80165 1.03665 1.00345 1.87849 1.20982 1.28943 1.95104 1.22239 0.96072 0.83875 0.94075 1.21561 0.94023 0.98342 1.00790 1.21525 1.02313 0.95221 0.94485 1.20825 0.95306 0.95568 0.96504 1.21715 1.03388 0.97705 0.93134 1.21485 0.78452 0.82562 0.92667 1.91188 1.48837 1.52438 1.44820 1.48137 1.62694 1.16214 1.08418 1.21928 0.97509 0.92219 0.90216 1.21954 0.95074 1.01925 0.97517 1.21550 1.02480 0.96839 0.94289 1.21837 0.93530 0.99523 1.00846 1.21231 0.96116 0.95800 0.82474 0.93080 1.20816 0.86198 0.94815 0.94042 1.42208 1.01590 1.41291 1.48620 1.19375 0.90851 1.10068 1.13282 0.92706 1.25166 0.95947 1.02433 1.03305 1.69796 0.99078 1.44704 1.48266 0.85405 0.77297 0.79456 0.79377 1.22968 1.22095 1.19890 1.21486 0.96487 0.95100 1.01451 1.21882 0.99435 0.97649 0.97811 0.95192 0.88304 0.92205 0.90927 0.92716 0.89324 0.88813 0.89967 0.93526 0.86498 0.87998 0.91764 0.87747 0.88196 0.91611 0.89981 0.91781 0.92042 0.90766 0.97531 0.96612 0.80025 0.94987 0.92474 0.93244 0.94320 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.82 113.37 1.23 1.81 16 2 O -0.41 -12.13 10.35 -148.98 -1.54 -13.67 16 3 C 0.09 2.66 2.61 30.59 0.08 2.74 16 4 C -0.11 -2.53 5.57 30.59 0.17 -2.36 16 5 C -0.10 -1.94 5.20 30.59 0.16 -1.78 16 6 C -0.06 -1.82 1.84 -10.80 -0.02 -1.84 16 7 C -0.12 -2.96 3.53 29.85 0.11 -2.85 16 8 C 0.46 16.27 7.03 87.66 0.62 16.89 16 9 O -0.50 -23.84 7.69 -3.06 -0.02 -23.87 16 10 N -0.62 -18.40 2.97 -795.02 -2.36 -20.76 16 11 C 0.10 1.94 6.34 86.36 0.55 2.49 16 12 C -0.13 -1.82 6.11 30.78 0.19 -1.63 16 13 C -0.11 -1.95 5.89 30.73 0.18 -1.77 16 14 C -0.12 -2.90 5.34 30.67 0.16 -2.74 16 15 C 0.15 4.98 2.91 44.97 0.13 5.11 16 16 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 17 C 0.17 7.57 4.89 86.38 0.42 7.99 16 18 N -0.70 -38.75 3.20 -343.45 -1.10 -39.85 16 19 C -0.20 -12.52 9.73 84.03 0.82 -11.71 16 20 H 0.05 3.38 7.83 -2.91 -0.02 3.36 16 21 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 22 N -0.97 -63.11 13.06 21.65 0.28 -62.82 16 23 Si 0.95 51.23 29.55 68.60 2.03 53.26 16 24 H -0.30 -16.39 7.11 99.48 0.71 -15.68 16 25 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 26 H -0.27 -13.99 7.11 99.48 0.71 -13.28 16 27 C -0.11 -4.01 4.94 30.59 0.15 -3.86 16 28 C -0.13 -4.81 5.54 30.59 0.17 -4.64 16 29 H 0.03 0.75 7.87 -2.39 -0.02 0.74 16 30 H 0.10 1.89 8.14 -2.38 -0.02 1.88 16 31 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 32 H 0.07 1.79 7.79 -2.39 -0.02 1.77 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 38 H 0.12 2.05 7.90 -2.39 -0.02 2.03 16 39 H 0.10 2.12 7.73 -2.38 -0.02 2.10 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.45 5.93 -2.39 -0.01 1.44 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.01 0.32 8.09 -2.39 -0.02 0.30 16 49 H 0.02 0.79 6.36 -2.39 -0.02 0.78 16 50 H 0.37 21.89 7.23 -92.71 -0.67 21.22 16 51 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 52 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.05 2.50 5.95 -2.39 -0.01 2.49 16 54 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 55 H 0.04 1.43 7.87 -2.38 -0.02 1.42 16 Total: -1.00 -80.70 408.96 3.03 -77.67 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.17 Total: 32.57 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.58 Total: -2.52 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -3.18 Total: -123.44 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.56 Total: -37.54 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.03 Total: 53.26 kcal Total: -80.70 3.03 -77.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485041932.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.442 kcal (2) G-P(sol) polarization free energy of solvation -80.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds