Wall clock time and date at job start Tue Mar 31 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99690 * 2 1 4 4 C 1.52997 * 109.46852 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47369 * 185.07297 * 4 3 2 6 6 C 1.50696 * 112.84736 * 305.86153 * 5 4 3 7 7 O 1.21284 * 119.99943 * 107.69147 * 6 5 4 8 8 N 1.34778 * 120.00049 * 287.69840 * 6 5 4 9 9 C 1.46495 * 119.99905 * 355.56417 * 8 6 5 10 10 C 1.46498 * 119.99878 * 175.57201 * 8 6 5 11 11 C 1.53004 * 109.46980 * 179.01257 * 10 8 6 12 12 C 1.53001 * 109.47088 * 299.99850 * 11 10 8 13 13 C 1.53002 * 109.46793 * 299.99963 * 12 11 10 14 14 N 1.46505 * 109.46902 * 179.97438 * 13 12 11 15 15 C 1.36932 * 120.00230 * 84.99876 * 14 13 12 16 16 H 1.08010 * 119.99815 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00593 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99741 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47013 * 59.99879 * 19 17 15 21 21 H 1.48499 * 109.46758 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47051 * 299.99562 * 19 17 15 23 23 C 1.52995 * 109.47309 * 60.00297 * 13 12 11 24 24 C 1.52999 * 109.47561 * 59.01305 * 10 8 6 25 25 C 1.53780 * 113.61649 * 174.66379 * 5 4 3 26 26 C 1.53781 * 87.07837 * 220.02002 * 25 5 4 27 27 C 1.53773 * 87.08336 * 25.43235 * 26 25 5 28 28 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47690 * 300.00433 * 1 2 3 30 30 H 1.09004 * 109.47310 * 60.00425 * 1 2 3 31 31 H 1.08993 * 109.47189 * 59.99852 * 3 2 1 32 32 H 1.08998 * 109.46805 * 299.98946 * 3 2 1 33 33 H 1.08999 * 109.47336 * 65.06871 * 4 3 2 34 34 H 1.09004 * 109.47223 * 305.07331 * 4 3 2 35 35 H 1.08997 * 109.47000 * 35.64540 * 9 8 6 36 36 H 1.08998 * 109.47152 * 155.64328 * 9 8 6 37 37 H 1.09000 * 109.47084 * 275.64504 * 9 8 6 38 38 H 1.08999 * 109.47189 * 299.00628 * 10 8 6 39 39 H 1.08996 * 109.47274 * 59.99476 * 11 10 8 40 40 H 1.09002 * 109.46910 * 180.02562 * 11 10 8 41 41 H 1.08992 * 109.47353 * 180.02562 * 12 11 10 42 42 H 1.09003 * 109.47371 * 59.99959 * 12 11 10 43 43 H 1.08993 * 109.47488 * 299.99427 * 13 12 11 44 44 H 0.96999 * 120.00013 * 265.00006 * 14 13 12 45 45 H 0.96994 * 120.00621 * 180.02562 * 18 17 15 46 46 H 1.09005 * 109.47298 * 179.97438 * 23 13 12 47 47 H 1.09003 * 109.47655 * 59.99674 * 23 13 12 48 48 H 1.09003 * 109.47209 * 180.02562 * 24 10 8 49 49 H 1.09004 * 109.47025 * 299.99895 * 24 10 8 50 50 H 1.08999 * 113.60993 * 105.47144 * 25 5 4 51 51 H 1.08995 * 113.69102 * 334.57800 * 25 5 4 52 52 H 1.08998 * 113.61491 * 139.98160 * 26 25 5 53 53 H 1.09003 * 113.61287 * 270.88583 * 26 25 5 54 54 H 1.09007 * 113.61560 * 89.11479 * 27 26 25 55 55 H 1.09004 * 113.61883 * 220.01831 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 6 4.1572 2.5768 0.1282 6 6 3.6600 3.5381 -0.9205 7 8 2.8998 4.4315 -0.6125 8 7 4.0601 3.4049 -2.2006 9 6 5.0525 2.3876 -2.5558 10 6 3.5025 4.2776 -3.2368 11 6 4.1379 3.9372 -4.5864 12 6 5.6514 4.1453 -4.5046 13 6 5.9473 5.6052 -4.1553 14 7 7.3966 5.8044 -4.0763 15 6 8.1145 6.0677 -5.2123 16 1 7.6123 6.1281 -6.1666 17 6 9.4878 6.2558 -5.1376 18 7 10.0998 6.1817 -3.9747 19 14 10.4669 6.6157 -6.6872 20 1 9.9665 7.8679 -7.3093 21 1 11.9019 6.7751 -6.3400 22 1 10.3106 5.4908 -7.6438 23 6 5.3120 5.9456 -2.8058 24 6 3.7984 5.7375 -2.8877 25 6 5.6884 2.5570 0.2694 26 6 5.5289 3.6834 1.3041 27 6 4.1115 3.1434 1.5571 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8638 0.7240 -0.9310 34 1 3.8506 0.5675 0.8420 35 1 4.8995 1.5006 -1.9411 36 1 4.9423 2.1241 -3.6077 37 1 6.0541 2.7811 -2.3829 38 1 2.4242 4.1293 -3.2952 39 1 3.9271 2.8971 -4.8352 40 1 3.7233 4.5868 -5.3573 41 1 6.1040 3.9032 -5.4661 42 1 6.0663 3.4960 -3.7335 43 1 5.5325 6.2545 -4.9263 44 1 7.8476 5.7497 -3.2193 45 1 11.0593 6.3136 -3.9223 46 1 5.5231 6.9857 -2.5568 47 1 5.7268 5.2964 -2.0347 48 1 3.3831 6.3868 -3.6585 49 1 3.3457 5.9801 -1.9262 50 1 6.2141 2.8655 -0.6343 51 1 6.0775 1.6297 0.6898 52 1 6.1933 3.5849 2.1626 53 1 5.5442 4.6823 0.8681 54 1 4.0680 2.3759 2.3299 55 1 3.3641 3.9252 1.6931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485242579.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:03 Heat of formation + Delta-G solvation = -54.248676 kcal Electronic energy + Delta-G solvation = -32421.657602 eV Core-core repulsion = 28459.487517 eV Total energy + Delta-G solvation = -3962.170085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.35840 -40.22652 -38.74938 -38.12979 -36.59172 -34.83422 -33.01655 -32.52035 -31.97459 -29.81799 -27.95047 -27.51069 -26.61200 -25.98821 -25.42953 -23.72902 -23.51726 -22.52413 -21.71858 -20.59619 -19.35950 -18.94429 -17.70362 -17.33306 -17.26715 -17.01674 -16.82681 -16.58975 -16.20863 -15.87156 -15.53592 -15.35761 -15.26282 -15.05505 -14.78761 -14.57400 -14.14205 -13.91803 -13.81735 -13.45824 -13.31880 -13.26197 -13.12268 -13.01782 -12.78276 -12.77708 -12.69794 -12.53984 -12.24559 -12.18879 -12.11832 -12.01734 -11.88669 -11.80267 -11.57291 -11.28595 -11.23367 -11.11816 -11.01463 -10.81347 -10.66559 -10.32281 -9.52736 -8.96335 -7.91646 -5.19405 1.47038 1.49562 1.55542 1.62739 2.02734 2.57323 2.71118 3.35636 3.41125 3.51396 3.61978 3.75239 3.86348 3.89603 3.90899 3.99413 4.09895 4.22621 4.25203 4.28484 4.31661 4.43790 4.44743 4.48166 4.51818 4.56124 4.56369 4.60086 4.65572 4.70055 4.75914 4.81340 4.82478 4.83310 4.91183 4.95101 5.03394 5.05732 5.08152 5.13729 5.18497 5.18813 5.25325 5.28487 5.29847 5.44096 5.49673 5.57075 5.62616 5.78270 6.15612 6.30474 6.46538 7.21694 7.36022 8.13333 8.36825 9.31741 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.003001 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.190657 B = 9328.759397 C = 9827.525264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.066 3.934 4 C -0.092 4.092 5 C -0.100 4.100 6 C 0.535 3.465 7 O -0.571 6.571 8 N -0.596 5.596 9 C 0.058 3.942 10 C 0.155 3.845 11 C -0.113 4.113 12 C -0.151 4.151 13 C 0.177 3.823 14 N -0.737 5.737 15 C -0.234 4.234 16 H 0.073 0.927 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.969 3.031 20 H -0.282 1.282 21 H -0.297 1.297 22 H -0.276 1.276 23 C -0.102 4.102 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.112 4.112 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.032 0.968 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.119 0.881 52 H 0.087 0.913 53 H 0.051 0.949 54 H 0.113 0.887 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.008 -14.405 8.785 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.010 4.010 4 C -0.129 4.129 5 C -0.103 4.103 6 C 0.324 3.676 7 O -0.451 6.451 8 N -0.328 5.328 9 C -0.083 4.083 10 C 0.053 3.947 11 C -0.151 4.151 12 C -0.190 4.190 13 C 0.069 3.931 14 N -0.376 5.376 15 C -0.366 4.366 16 H 0.091 0.909 17 C -0.268 4.268 18 N -0.621 5.621 19 Si 0.798 3.202 20 H -0.208 1.208 21 H -0.223 1.223 22 H -0.202 1.202 23 C -0.141 4.141 24 C -0.164 4.164 25 C -0.163 4.163 26 C -0.185 4.185 27 C -0.149 4.149 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.138 0.862 52 H 0.105 0.895 53 H 0.070 0.930 54 H 0.131 0.869 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.257 -14.053 8.714 24.632 hybrid contribution 0.865 1.114 -0.584 1.526 sum -17.392 -12.940 8.131 23.152 Atomic orbital electron populations 1.22912 0.79762 1.03924 1.00469 1.87806 1.21221 1.28121 1.95525 1.22449 0.94536 0.84247 0.99807 1.21501 0.92426 0.93877 1.05137 1.21874 0.98375 0.94708 0.95380 1.20300 0.79910 0.84449 0.82911 1.90609 1.38109 1.35250 1.81116 1.47837 1.42390 1.35559 1.06987 1.22597 0.90954 0.91052 1.03736 1.21021 0.97239 0.89081 0.87397 1.21785 0.95062 1.02994 0.95272 1.22678 0.95271 0.98943 1.02106 1.20388 0.83030 0.94742 0.94902 1.42621 1.03031 1.85309 1.06657 1.19540 0.90134 1.38346 0.88564 0.90942 1.25497 0.97815 1.04075 0.99455 1.69804 1.08772 1.58838 1.24677 0.85278 0.77325 0.78181 0.79395 1.20827 1.22345 1.20250 1.21515 0.95729 0.99507 0.97303 1.21861 0.94982 0.96737 1.02834 1.23233 0.92167 1.00799 1.00079 1.22805 0.97871 0.97672 1.00140 1.22899 0.97096 1.00786 0.94157 0.87896 0.93458 0.94006 0.93204 0.94963 0.89562 0.88040 0.89065 0.88748 0.92476 0.90405 0.89269 0.89871 0.93660 0.89780 0.95021 0.79915 0.94175 0.94440 0.93589 0.90641 0.91205 0.91319 0.86232 0.89477 0.93000 0.86857 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -7.97 10.70 -148.98 -1.59 -9.57 16 3 C 0.07 1.28 5.51 71.98 0.40 1.68 16 4 C -0.09 -1.52 4.81 30.59 0.15 -1.37 16 5 C -0.10 -2.00 0.31 -52.40 -0.02 -2.01 16 6 C 0.54 14.06 4.94 87.66 0.43 14.49 16 7 O -0.57 -18.72 13.93 -3.04 -0.04 -18.77 16 8 N -0.60 -14.48 2.25 -822.61 -1.85 -16.33 16 9 C 0.06 1.19 6.86 127.77 0.88 2.07 16 10 C 0.16 3.92 2.99 44.99 0.13 4.06 16 11 C -0.11 -2.67 4.91 30.60 0.15 -2.52 16 12 C -0.15 -4.81 4.85 30.60 0.15 -4.67 16 13 C 0.18 6.98 2.77 44.99 0.12 7.10 16 14 N -0.74 -37.19 5.12 -322.94 -1.65 -38.85 16 15 C -0.23 -12.94 9.93 84.03 0.83 -12.10 16 16 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 17 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 18 N -0.97 -59.40 13.06 21.65 0.28 -59.11 16 19 Si 0.97 46.17 29.55 68.60 2.03 48.19 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 C -0.10 -3.67 5.23 30.59 0.16 -3.51 16 24 C -0.13 -3.76 5.22 30.59 0.16 -3.60 16 25 C -0.13 -2.37 6.26 31.12 0.19 -2.18 16 26 C -0.15 -3.16 7.80 31.12 0.24 -2.91 16 27 C -0.11 -2.19 6.88 31.12 0.21 -1.97 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.99 7.93 -2.39 -0.02 0.97 16 32 H 0.03 0.72 7.46 -2.39 -0.02 0.70 16 33 H 0.09 1.32 5.83 -2.39 -0.01 1.31 16 34 H 0.10 1.36 8.06 -2.38 -0.02 1.34 16 35 H 0.09 1.46 4.29 -2.39 -0.01 1.45 16 36 H 0.09 1.77 4.98 -2.39 -0.01 1.76 16 37 H 0.06 1.40 5.17 -2.39 -0.01 1.38 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.69 6.88 -2.39 -0.02 1.67 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 2.63 3.66 -2.39 -0.01 2.62 16 43 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 44 H 0.37 20.26 7.80 -92.71 -0.72 19.54 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 46 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.05 1.72 7.60 -2.39 -0.02 1.70 16 48 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.07 2.33 5.95 -2.38 -0.01 2.31 16 50 H 0.07 1.54 5.36 -2.39 -0.01 1.52 16 51 H 0.12 1.62 8.10 -2.39 -0.02 1.60 16 52 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.11 1.62 8.04 -2.38 -0.02 1.60 16 55 H 0.06 1.45 7.38 -2.39 -0.02 1.43 16 Total: -1.00 -69.20 401.85 3.24 -65.95 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.16 Total: 38.24 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.91 Total: -9.76 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -3.22 Total: -114.29 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -1.64 Total: -28.33 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -69.20 3.24 -65.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485242579.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.706 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds