Wall clock time and date at job start Tue Mar 31 2020 22:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00002 * 2 1 4 4 H 1.08998 * 109.47163 * 329.99136 * 3 2 1 5 5 C 1.52996 * 109.47543 * 89.99928 * 3 2 1 6 6 C 1.52999 * 109.47192 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46662 * 299.99451 * 6 5 3 8 8 C 1.52994 * 109.47206 * 60.00511 * 7 6 5 9 9 H 1.08998 * 109.47499 * 59.99752 * 8 7 6 10 10 C 1.50700 * 109.47383 * 179.97438 * 8 7 6 11 11 O 1.21280 * 120.00109 * 119.99160 * 10 8 7 12 12 N 1.34779 * 119.99792 * 299.99913 * 10 8 7 13 13 C 1.46498 * 119.99789 * 175.31371 * 12 10 8 14 14 C 1.53009 * 109.47114 * 62.18351 * 13 12 10 15 15 N 1.46500 * 109.47076 * 58.31837 * 14 13 12 16 16 C 1.36935 * 120.00169 * 174.87456 * 15 14 13 17 17 H 1.08002 * 119.99742 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99867 * 179.72544 * 16 15 14 19 19 N 1.31617 * 120.00287 * 0.27496 * 18 16 15 20 20 Si 1.86802 * 119.99593 * 180.27362 * 18 16 15 21 21 H 1.48499 * 109.47150 * 90.00095 * 20 18 16 22 22 H 1.48508 * 109.47004 * 209.99710 * 20 18 16 23 23 H 1.48497 * 109.47537 * 329.99732 * 20 18 16 24 24 C 1.53005 * 109.47239 * 182.17938 * 13 12 10 25 25 C 1.53002 * 109.46595 * 60.00439 * 24 13 12 26 26 C 1.52995 * 109.47478 * 60.00341 * 25 24 13 27 27 C 1.53008 * 109.46726 * 299.99949 * 26 25 24 28 28 C 1.52995 * 109.47268 * 60.00019 * 27 26 25 29 29 C 1.53001 * 109.46526 * 209.99510 * 3 2 1 30 30 H 1.08991 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46947 * 300.00977 * 1 2 3 32 32 H 1.09005 * 109.46650 * 60.00351 * 1 2 3 33 33 H 1.09004 * 109.47096 * 299.99716 * 5 3 2 34 34 H 1.08998 * 109.47537 * 59.99437 * 5 3 2 35 35 H 1.08990 * 109.47426 * 59.99591 * 6 5 3 36 36 H 1.09007 * 109.46888 * 179.97438 * 6 5 3 37 37 H 1.09000 * 109.47509 * 299.99684 * 7 6 5 38 38 H 1.09004 * 109.46699 * 180.02562 * 7 6 5 39 39 H 0.96996 * 119.99930 * 355.32292 * 12 10 8 40 40 H 1.08998 * 109.46741 * 298.32006 * 14 13 12 41 41 H 1.08990 * 109.47137 * 178.31833 * 14 13 12 42 42 H 0.97002 * 119.99823 * 354.87443 * 15 14 13 43 43 H 0.97006 * 120.00133 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.47248 * 180.02562 * 24 13 12 45 45 H 1.08994 * 109.46845 * 300.00681 * 24 13 12 46 46 H 1.09006 * 109.47086 * 299.99662 * 25 24 13 47 47 H 1.08999 * 109.46554 * 180.02562 * 25 24 13 48 48 H 1.08993 * 109.47213 * 180.02562 * 26 25 24 49 49 H 1.08999 * 109.47113 * 59.99076 * 26 25 24 50 50 H 1.08999 * 109.46611 * 299.99434 * 27 26 25 51 51 H 1.09003 * 109.46578 * 180.02562 * 27 26 25 52 52 H 1.08999 * 109.46721 * 179.97438 * 28 27 26 53 53 H 1.08992 * 109.47118 * 60.00130 * 28 27 26 54 54 H 1.09000 * 109.47084 * 60.00483 * 29 3 2 55 55 H 1.09000 * 109.47509 * 299.99338 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5140 5 6 2.2177 1.7714 1.4424 6 6 2.8394 3.1694 1.4423 7 6 4.1881 3.1276 0.7210 8 6 3.9807 2.6617 -0.7215 9 1 3.3152 3.3553 -1.2353 10 6 5.3090 2.6211 -1.4322 11 8 5.7184 1.5767 -1.8931 12 7 6.0419 3.7455 -1.5554 13 6 7.3775 3.6872 -2.1545 14 6 7.2662 3.2078 -3.6033 15 7 6.3978 4.1183 -4.3536 16 6 6.2324 3.9507 -5.7025 17 1 6.7426 3.1475 -6.2134 18 6 5.4051 4.8100 -6.4124 19 7 4.7838 5.7892 -5.7899 20 14 5.1736 4.5766 -8.2513 21 1 4.0238 3.6688 -8.4941 22 1 4.9087 5.8920 -8.8877 23 1 6.4042 3.9837 -8.8339 24 6 8.0108 5.0797 -2.1254 25 6 8.1222 5.5590 -0.6767 26 6 8.9952 4.5851 0.1171 27 6 8.3619 3.1926 0.0879 28 6 8.2506 2.7132 -1.3607 29 6 3.3590 1.2631 -0.7212 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.2569 1.8016 1.9563 34 1 2.8829 1.0776 1.9564 35 1 2.1739 3.8630 0.9286 36 1 2.9868 3.5016 2.4700 37 1 4.8537 2.4341 1.2348 38 1 4.6312 4.1235 0.7213 39 1 5.6851 4.5932 -1.2474 40 1 6.8426 2.2036 -3.6221 41 1 8.2565 3.1929 -4.0582 42 1 5.9399 4.8400 -3.8948 43 1 4.2054 6.3895 -6.2860 44 1 9.0043 5.0364 -2.5715 45 1 7.3888 5.7735 -2.6909 46 1 7.1284 5.6024 -0.2309 47 1 8.5729 6.5512 -0.6560 48 1 9.0741 4.9264 1.1492 49 1 9.9889 4.5417 -0.3287 50 1 7.3682 3.2360 0.5337 51 1 8.9837 2.4988 0.6538 52 1 7.7998 1.7210 -1.3814 53 1 9.2442 2.6698 -1.8065 54 1 3.2112 0.9312 -1.7488 55 1 4.0242 0.5692 -0.2072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485454478.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:45 Heat of formation + Delta-G solvation = -124.279014 kcal Electronic energy + Delta-G solvation = -32220.825613 eV Core-core repulsion = 28255.618785 eV Total energy + Delta-G solvation = -3965.206828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80938 -40.20163 -38.81563 -37.09607 -36.38285 -34.63304 -33.22334 -32.02139 -31.63668 -31.18588 -30.28432 -27.33242 -27.02663 -24.92131 -24.66940 -23.44269 -23.29286 -22.04498 -21.45956 -20.72070 -20.03003 -19.23436 -18.48983 -17.20108 -16.86053 -16.62064 -16.44282 -16.21784 -16.08400 -15.99869 -15.37400 -15.20542 -15.01126 -14.85151 -14.72973 -14.66014 -14.37714 -14.11441 -13.71567 -13.50074 -13.40169 -13.22070 -13.09727 -12.97372 -12.86187 -12.70560 -12.64391 -12.59747 -12.31243 -12.11837 -12.03890 -11.95639 -11.87552 -11.63106 -11.49214 -11.47177 -11.40104 -11.10155 -11.02764 -10.98647 -10.51176 -10.21877 -9.80034 -8.93604 -7.96084 -5.21643 1.43101 1.44809 1.52968 1.83200 2.26388 2.54276 2.84133 3.36660 3.58185 3.71412 3.74312 3.87977 3.90132 3.91905 4.09731 4.13148 4.17308 4.24729 4.28203 4.35758 4.43019 4.45998 4.49274 4.52707 4.54368 4.60028 4.63547 4.65676 4.66793 4.83116 4.83679 4.88408 4.89233 5.00464 5.07295 5.13227 5.15899 5.16794 5.19281 5.22813 5.23422 5.29016 5.30634 5.35524 5.41433 5.45073 5.45820 5.52350 5.57092 5.81459 6.27061 6.28974 6.76155 7.34380 7.47009 8.09321 8.38712 9.26881 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008071 B = 0.004328 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3468.235132 B = 6468.224241 C = 8949.135433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.090 3.910 4 H 0.066 0.934 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.102 4.102 8 C -0.098 4.098 9 H 0.098 0.902 10 C 0.519 3.481 11 O -0.575 6.575 12 N -0.699 5.699 13 C 0.186 3.814 14 C 0.140 3.860 15 N -0.727 5.727 16 C -0.245 4.245 17 H 0.061 0.939 18 C -0.066 4.066 19 N -0.962 5.962 20 Si 0.966 3.034 21 H -0.292 1.292 22 H -0.289 1.289 23 H -0.275 1.275 24 C -0.112 4.112 25 C -0.111 4.111 26 C -0.112 4.112 27 C -0.106 4.106 28 C -0.122 4.122 29 C -0.088 4.088 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.406 0.594 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.378 0.622 43 H 0.252 0.748 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.056 0.944 53 H 0.068 0.932 54 H 0.040 0.960 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 -1.884 22.054 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.033 3.967 4 H 0.084 0.916 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.140 4.140 8 C -0.119 4.119 9 H 0.116 0.884 10 C 0.307 3.693 11 O -0.454 6.454 12 N -0.350 5.350 13 C 0.100 3.900 14 C 0.013 3.987 15 N -0.371 5.371 16 C -0.378 4.378 17 H 0.079 0.921 18 C -0.259 4.259 19 N -0.613 5.613 20 Si 0.796 3.204 21 H -0.219 1.219 22 H -0.215 1.215 23 H -0.200 1.200 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.143 4.143 28 C -0.161 4.161 29 C -0.126 4.126 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.242 0.758 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.075 0.925 53 H 0.086 0.914 54 H 0.059 0.941 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.478 -2.864 21.572 21.812 hybrid contribution -0.752 0.344 -1.713 1.902 sum -2.230 -2.520 19.859 20.142 Atomic orbital electron populations 1.22959 0.79707 1.03683 1.00755 1.87880 1.21314 1.28679 1.95275 1.22175 0.93618 0.84226 0.96679 0.91634 1.22002 1.02102 0.97754 0.95340 1.21484 0.95359 0.95921 1.01903 1.21546 0.99046 1.02342 0.91083 1.21259 0.93354 0.98587 0.98710 0.88364 1.20863 0.86469 0.83349 0.78664 1.90623 1.72624 1.32622 1.49533 1.45835 1.16911 1.10234 1.62010 1.20372 0.82576 0.96680 0.90405 1.21169 0.92812 0.93305 0.91439 1.42264 1.55153 1.34836 1.04804 1.19541 1.21881 1.10178 0.86151 0.92131 1.25377 1.00341 0.98285 1.01905 1.69769 1.35269 1.20125 1.36088 0.85248 0.77748 0.76555 0.80869 1.21913 1.21467 1.19983 1.21677 1.00755 0.93936 0.98634 1.21526 1.00983 0.99253 0.93109 1.21516 0.98704 0.94002 1.00685 1.21419 1.01240 0.97265 0.94399 1.21797 0.98829 0.98708 0.96786 1.21223 0.95808 0.95768 0.99838 0.88701 0.92413 0.93967 0.90346 0.91610 0.90835 0.88940 0.91455 0.89409 0.75809 0.96910 0.96647 0.78876 0.93962 0.91134 0.92832 0.91160 0.90634 0.90109 0.91978 0.91964 0.91386 0.92503 0.91367 0.94120 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.67 16 2 O -0.41 -10.46 10.35 -148.98 -1.54 -12.00 16 3 C 0.09 2.07 2.61 30.59 0.08 2.15 16 4 H 0.07 1.42 7.79 -2.39 -0.02 1.40 16 5 C -0.13 -2.27 5.54 30.59 0.17 -2.10 16 6 C -0.11 -1.51 5.92 30.59 0.18 -1.32 16 7 C -0.10 -1.80 5.10 30.59 0.16 -1.64 16 8 C -0.10 -2.55 2.52 -11.52 -0.03 -2.57 16 9 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 10 C 0.52 17.50 6.56 87.66 0.58 18.08 16 11 O -0.57 -24.43 12.23 -3.03 -0.04 -24.46 16 12 N -0.70 -21.22 3.40 -422.90 -1.44 -22.66 16 13 C 0.19 6.14 0.32 3.61 0.00 6.14 16 14 C 0.14 6.33 4.97 86.38 0.43 6.76 16 15 N -0.73 -38.29 5.12 -343.46 -1.76 -40.05 16 16 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 17 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 19 N -0.96 -58.44 13.06 21.65 0.28 -58.16 16 20 Si 0.97 47.75 29.55 68.60 2.03 49.78 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 24 C -0.11 -3.26 4.62 30.60 0.14 -3.12 16 25 C -0.11 -2.25 5.75 30.59 0.18 -2.08 16 26 C -0.11 -2.00 5.92 30.60 0.18 -1.82 16 27 C -0.11 -2.27 5.77 30.60 0.18 -2.09 16 28 C -0.12 -3.58 4.49 30.59 0.14 -3.45 16 29 C -0.09 -2.55 4.15 30.61 0.13 -2.42 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 0.79 7.87 -2.39 -0.02 0.77 16 32 H 0.04 0.73 8.09 -2.38 -0.02 0.71 16 33 H 0.08 1.09 7.87 -2.39 -0.02 1.07 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.25 7.68 -2.39 -0.02 1.23 16 39 H 0.41 10.43 6.96 -92.71 -0.65 9.78 16 40 H 0.01 0.67 6.22 -2.39 -0.01 0.65 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.38 20.15 6.51 -92.71 -0.60 19.54 16 43 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.86 7.07 -2.39 -0.02 1.84 16 46 H 0.07 1.28 6.91 -2.38 -0.02 1.26 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.06 1.32 7.60 -2.39 -0.02 1.30 16 51 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.06 1.99 6.18 -2.39 -0.01 1.98 16 53 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 54 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 55 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 Total: -1.00 -73.84 410.50 2.18 -71.65 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.39 Total: 40.79 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.03 Total: -4.89 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -2.91 Total: -120.87 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.58 Total: -36.47 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -73.84 2.18 -71.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485454478.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.624 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds