Wall clock time and date at job start Tue Mar 31 2020 22:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99887 * 2 1 4 4 H 1.08998 * 109.47356 * 29.99219 * 3 2 1 5 5 C 1.53001 * 109.46815 * 269.99535 * 3 2 1 6 6 C 1.53003 * 109.47202 * 300.00298 * 5 3 2 7 7 C 1.53005 * 109.46904 * 300.00066 * 6 5 3 8 8 C 1.53001 * 109.47245 * 59.99960 * 7 6 5 9 9 H 1.08995 * 109.47044 * 59.99848 * 8 7 6 10 10 C 1.50699 * 109.46938 * 180.02562 * 8 7 6 11 11 O 1.21281 * 120.00303 * 120.00190 * 10 8 7 12 12 N 1.34778 * 119.99692 * 299.99654 * 10 8 7 13 13 C 1.46505 * 119.99460 * 174.66736 * 12 10 8 14 14 C 1.53001 * 109.47136 * 303.95827 * 13 12 10 15 15 N 1.46499 * 109.47456 * 305.42258 * 14 13 12 16 16 C 1.36936 * 120.00073 * 175.03678 * 15 14 13 17 17 H 1.07997 * 119.99664 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99964 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00263 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99953 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46967 * 89.99933 * 20 18 16 22 22 H 1.48496 * 109.47014 * 209.99969 * 20 18 16 23 23 H 1.48500 * 109.47090 * 329.99629 * 20 18 16 24 24 C 1.53007 * 109.46576 * 183.96244 * 13 12 10 25 25 C 1.53001 * 109.47279 * 299.99950 * 24 13 12 26 26 C 1.52998 * 109.46714 * 300.00066 * 25 24 13 27 27 C 1.53004 * 109.47470 * 60.00284 * 26 25 24 28 28 C 1.52992 * 109.47371 * 63.96529 * 13 12 10 29 29 C 1.52998 * 109.46907 * 299.99962 * 8 7 6 30 30 H 1.09008 * 109.46701 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47184 * 300.00464 * 1 2 3 32 32 H 1.08996 * 109.46642 * 60.00560 * 1 2 3 33 33 H 1.08995 * 109.47044 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47295 * 59.99834 * 5 3 2 35 35 H 1.09001 * 109.47366 * 180.02562 * 6 5 3 36 36 H 1.08995 * 109.47541 * 59.99729 * 6 5 3 37 37 H 1.09005 * 109.47217 * 299.99903 * 7 6 5 38 38 H 1.09004 * 109.47001 * 180.02562 * 7 6 5 39 39 H 0.96994 * 120.00264 * 354.66463 * 12 10 8 40 40 H 1.08998 * 109.46776 * 65.42481 * 14 13 12 41 41 H 1.09007 * 109.46805 * 185.42226 * 14 13 12 42 42 H 0.96999 * 119.99904 * 355.03522 * 15 14 13 43 43 H 0.96997 * 120.00467 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47095 * 60.00276 * 24 13 12 45 45 H 1.09002 * 109.46688 * 180.02562 * 24 13 12 46 46 H 1.09000 * 109.46906 * 180.02562 * 25 24 13 47 47 H 1.08998 * 109.47101 * 59.99969 * 25 24 13 48 48 H 1.09002 * 109.47710 * 300.00009 * 26 25 24 49 49 H 1.09009 * 109.46718 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.47481 * 179.97438 * 27 26 25 51 51 H 1.09002 * 109.46878 * 59.99216 * 27 26 25 52 52 H 1.09002 * 109.47495 * 179.97438 * 28 13 12 53 53 H 1.08998 * 109.47262 * 299.99750 * 28 13 12 54 54 H 1.09001 * 109.47071 * 179.97438 * 29 8 7 55 55 H 1.08995 * 109.47603 * 300.00129 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7971 -2.1637 7 6 4.5002 0.7550 -1.4424 8 6 4.2927 0.2892 0.0002 9 1 3.8494 -0.7065 0.0002 10 6 5.6210 0.2483 0.7108 11 8 5.8026 0.9307 1.6968 12 7 6.6072 -0.5468 0.2506 13 6 7.9344 -0.5002 0.8693 14 6 8.4661 0.9338 0.8284 15 7 8.4386 1.4258 -0.5513 16 6 8.7741 2.7256 -0.8215 17 1 9.0593 3.3879 -0.0176 18 6 8.7474 3.1919 -2.1286 19 7 8.4003 2.3845 -3.1084 20 14 9.2044 4.9653 -2.4972 21 1 10.6636 5.0567 -2.7571 22 1 8.4583 5.4301 -3.6940 23 1 8.8543 5.8187 -1.3334 24 6 8.8871 -1.4195 0.1022 25 6 8.3553 -2.8536 0.1430 26 6 8.2570 -3.3198 1.5969 27 6 7.3043 -2.4006 2.3640 28 6 7.8360 -0.9665 2.3231 29 6 3.3589 1.2633 0.7213 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 2.6615 2.7668 -1.4426 34 1 1.2569 1.8012 -1.9565 35 1 3.2998 1.1292 -3.1913 36 1 2.7083 -0.1986 -2.1637 37 1 4.9436 1.7508 -1.4424 38 1 5.1657 0.0613 -1.9564 39 1 6.4383 -1.1497 -0.4902 40 1 7.8411 1.5710 1.4539 41 1 9.4906 0.9521 1.2003 42 1 8.1828 0.8307 -1.2733 43 1 8.3813 2.7104 -4.0218 44 1 8.9572 -1.0873 -0.9336 45 1 9.8744 -1.3853 0.5628 46 1 9.0343 -3.5085 -0.4031 47 1 7.3679 -2.8881 -0.3173 48 1 9.2444 -3.2852 2.0572 49 1 7.8777 -4.3413 1.6260 50 1 7.2339 -2.7330 3.3996 51 1 6.3168 -2.4352 1.9036 52 1 8.8235 -0.9324 2.7833 53 1 7.1573 -0.3117 2.8696 54 1 3.2107 0.9312 1.7488 55 1 3.8022 2.2590 0.7212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485454480.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:53 Heat of formation + Delta-G solvation = -120.716432 kcal Electronic energy + Delta-G solvation = -32726.542343 eV Core-core repulsion = 28761.490000 eV Total energy + Delta-G solvation = -3965.052343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.76032 -40.27681 -38.75581 -36.70233 -36.35524 -34.59294 -33.16819 -31.98595 -31.63734 -31.23842 -30.32409 -27.28918 -27.00156 -24.90064 -24.63855 -23.47907 -23.39963 -22.02493 -21.40239 -20.50604 -19.97956 -19.18293 -18.37604 -17.10836 -16.78888 -16.61582 -16.54491 -16.11960 -16.10562 -15.89868 -15.48934 -15.15383 -14.95725 -14.93515 -14.65140 -14.58127 -14.14023 -13.88121 -13.56884 -13.52991 -13.36797 -13.34258 -13.06679 -13.01859 -12.85834 -12.77550 -12.70148 -12.56199 -12.24440 -12.18581 -12.09703 -11.99025 -11.85960 -11.74183 -11.43218 -11.37303 -11.15571 -11.11196 -10.99141 -10.94611 -10.40857 -10.19332 -9.75636 -8.90042 -7.91884 -5.17051 1.43952 1.44418 1.52951 1.86294 2.41152 2.56501 2.90371 3.40454 3.63646 3.71476 3.77023 3.86166 3.88374 3.91838 4.12390 4.14630 4.23735 4.27646 4.29536 4.43398 4.46202 4.49206 4.53305 4.59939 4.62032 4.63297 4.64299 4.69481 4.72303 4.82571 4.87670 4.88304 4.92298 4.99972 5.07827 5.13860 5.17301 5.17985 5.20081 5.21469 5.27237 5.29298 5.31790 5.33800 5.40893 5.47937 5.51617 5.53498 5.55617 5.83949 6.30304 6.34563 6.79191 7.38193 7.50823 8.12868 8.42976 9.30438 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007437 B = 0.005388 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3764.142229 B = 5195.125836 C = 7958.590279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.099 3.901 4 H 0.075 0.925 5 C -0.140 4.140 6 C -0.102 4.102 7 C -0.097 4.097 8 C -0.087 4.087 9 H 0.114 0.886 10 C 0.521 3.479 11 O -0.575 6.575 12 N -0.700 5.700 13 C 0.184 3.816 14 C 0.142 3.858 15 N -0.724 5.724 16 C -0.242 4.242 17 H 0.057 0.943 18 C -0.061 4.061 19 N -0.956 5.956 20 Si 0.961 3.039 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.106 4.106 28 C -0.121 4.121 29 C -0.090 4.090 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.403 0.597 40 H 0.019 0.981 41 H 0.012 0.988 42 H 0.378 0.622 43 H 0.250 0.750 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.055 0.945 52 H 0.070 0.930 53 H 0.056 0.944 54 H 0.066 0.934 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 -13.021 5.926 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C 0.041 3.959 4 H 0.093 0.907 5 C -0.178 4.178 6 C -0.140 4.140 7 C -0.135 4.135 8 C -0.108 4.108 9 H 0.132 0.868 10 C 0.309 3.691 11 O -0.455 6.455 12 N -0.351 5.351 13 C 0.097 3.903 14 C 0.014 3.986 15 N -0.367 5.367 16 C -0.374 4.374 17 H 0.075 0.925 18 C -0.254 4.254 19 N -0.607 5.607 20 Si 0.791 3.209 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.151 4.151 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.144 4.144 28 C -0.160 4.160 29 C -0.128 4.128 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.239 0.761 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.212 0.788 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.074 0.926 52 H 0.088 0.912 53 H 0.075 0.925 54 H 0.085 0.915 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.007 -12.525 6.662 19.247 hybrid contribution 0.345 1.458 -0.926 1.761 sum -12.662 -11.067 5.736 17.768 Atomic orbital electron populations 1.22953 0.80053 1.03647 1.00549 1.87888 1.20838 1.27542 1.95106 1.22024 0.93611 0.85027 0.95219 0.90664 1.22032 1.00530 0.99133 0.96108 1.21340 0.93643 1.00733 0.98261 1.21334 0.98300 1.00532 0.93330 1.21146 0.91773 1.02498 0.95369 0.86828 1.20924 0.86510 0.78031 0.83649 1.90578 1.82867 1.43835 1.28172 1.45831 1.10188 1.42278 1.36822 1.20396 0.82472 0.93628 0.93777 1.21122 0.96328 0.94225 0.86921 1.42214 1.81769 1.09604 1.03101 1.19458 1.36560 0.89179 0.92222 0.92481 1.25286 1.03421 1.01213 0.95530 1.69764 1.56211 1.35749 0.98984 0.85331 0.77552 0.81067 0.76958 1.21355 1.21778 1.20657 1.21702 0.98342 0.95270 0.99776 1.21529 1.01513 0.94306 0.97658 1.21521 0.99749 0.99009 0.94638 1.21408 0.99046 0.93290 1.00623 1.21813 1.01768 0.97776 0.94639 1.21345 0.93615 0.98956 0.98878 0.88549 0.93545 0.93315 0.92035 0.89975 0.92046 0.90129 0.94958 0.91873 0.76108 0.96325 0.97038 0.78827 0.94085 0.92872 0.90709 0.90418 0.91671 0.91609 0.90297 0.91271 0.92611 0.91177 0.92526 0.91499 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.39 -8.59 9.00 -148.98 -1.34 -9.93 16 3 C 0.10 2.28 2.92 30.59 0.09 2.37 16 4 H 0.08 1.50 7.79 -2.39 -0.02 1.48 16 5 C -0.14 -3.26 5.63 30.60 0.17 -3.08 16 6 C -0.10 -2.62 5.78 30.60 0.18 -2.45 16 7 C -0.10 -3.11 5.11 30.60 0.16 -2.96 16 8 C -0.09 -2.62 2.38 -11.54 -0.03 -2.65 16 9 H 0.11 3.00 7.68 -2.39 -0.02 2.98 16 10 C 0.52 18.84 6.56 87.66 0.58 19.41 16 11 O -0.57 -24.87 12.28 -3.03 -0.04 -24.91 16 12 N -0.70 -22.74 3.43 -422.91 -1.45 -24.19 16 13 C 0.18 6.21 0.32 3.60 0.00 6.21 16 14 C 0.14 6.38 4.79 86.38 0.41 6.79 16 15 N -0.72 -37.79 5.19 -343.46 -1.78 -39.57 16 16 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 17 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 18 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 19 N -0.96 -57.53 13.06 21.65 0.28 -57.25 16 20 Si 0.96 47.62 29.55 68.60 2.03 49.65 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 24 C -0.11 -3.33 4.67 30.60 0.14 -3.19 16 25 C -0.11 -2.42 5.75 30.59 0.18 -2.24 16 26 C -0.11 -2.13 5.92 30.59 0.18 -1.95 16 27 C -0.11 -2.44 5.77 30.60 0.18 -2.26 16 28 C -0.12 -3.63 4.58 30.59 0.14 -3.49 16 29 C -0.09 -2.65 4.23 30.59 0.13 -2.52 16 30 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.05 0.63 7.87 -2.39 -0.02 0.61 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.55 7.87 -2.38 -0.02 1.53 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.86 7.68 -2.39 -0.02 1.84 16 37 H 0.03 1.31 8.14 -2.38 -0.02 1.30 16 38 H 0.06 2.05 7.69 -2.38 -0.02 2.03 16 39 H 0.40 11.42 6.79 -92.71 -0.63 10.79 16 40 H 0.02 0.96 6.25 -2.39 -0.01 0.94 16 41 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.38 20.11 6.46 -92.71 -0.60 19.51 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.05 1.85 7.11 -2.39 -0.02 1.83 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.06 1.33 6.78 -2.39 -0.02 1.32 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 50 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.06 1.34 7.60 -2.39 -0.02 1.32 16 52 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 53 H 0.06 2.02 6.28 -2.39 -0.02 2.00 16 54 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 55 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -69.82 408.39 2.37 -67.45 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: -0.37 Total: 45.64 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.04 Total: -6.90 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -2.95 Total: -121.01 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.38 Total: -34.84 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -69.82 2.37 -67.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485454480.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.267 kcal (2) G-P(sol) polarization free energy of solvation -69.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds