Wall clock time and date at job start Tue Mar 31 2020 22:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99835 * 2 1 4 4 H 1.09003 * 109.47130 * 29.99344 * 3 2 1 5 5 C 1.53001 * 109.46863 * 269.99627 * 3 2 1 6 6 C 1.52997 * 109.47069 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47247 * 59.99747 * 6 5 3 8 8 C 1.52999 * 109.46993 * 300.00347 * 7 6 5 9 9 H 1.08995 * 109.47227 * 299.99188 * 8 7 6 10 10 C 1.50703 * 109.46750 * 179.97438 * 8 7 6 11 11 O 1.21281 * 119.99972 * 239.99811 * 10 8 7 12 12 N 1.34779 * 120.00211 * 59.99988 * 10 8 7 13 13 C 1.46499 * 120.00257 * 175.30979 * 12 10 8 14 14 C 1.52994 * 109.47096 * 62.18095 * 13 12 10 15 15 N 1.46496 * 109.47476 * 58.15106 * 14 13 12 16 16 C 1.36939 * 120.00237 * 174.88218 * 15 14 13 17 17 H 1.07997 * 120.00151 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99919 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99708 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99906 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47342 * 269.99748 * 20 18 16 22 22 H 1.48502 * 109.47234 * 29.99955 * 20 18 16 23 23 H 1.48505 * 109.46733 * 149.99790 * 20 18 16 24 24 C 1.52995 * 109.46902 * 182.18053 * 13 12 10 25 25 C 1.53004 * 109.47554 * 60.00217 * 24 13 12 26 26 C 1.52997 * 109.46775 * 59.99238 * 25 24 13 27 27 C 1.52991 * 109.47762 * 300.00316 * 26 25 24 28 28 C 1.52998 * 109.47062 * 302.17980 * 13 12 10 29 29 C 1.52997 * 109.47131 * 149.99515 * 3 2 1 30 30 H 1.08995 * 109.47417 * 300.00309 * 1 2 3 31 31 H 1.09006 * 109.46740 * 60.00545 * 1 2 3 32 32 H 1.08998 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47016 * 299.99787 * 5 3 2 34 34 H 1.09000 * 109.46906 * 60.00056 * 5 3 2 35 35 H 1.08995 * 109.47272 * 180.02562 * 6 5 3 36 36 H 1.09005 * 109.47437 * 300.00103 * 6 5 3 37 37 H 1.08998 * 109.47270 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.46611 * 59.99850 * 7 6 5 39 39 H 0.97003 * 119.99429 * 355.30612 * 12 10 8 40 40 H 1.09008 * 109.46999 * 298.15412 * 14 13 12 41 41 H 1.08995 * 109.47256 * 178.15316 * 14 13 12 42 42 H 0.97004 * 119.99411 * 354.88463 * 15 14 13 43 43 H 0.97004 * 119.99360 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.46708 * 179.97438 * 24 13 12 45 45 H 1.08995 * 109.47361 * 299.99486 * 24 13 12 46 46 H 1.08997 * 109.46482 * 299.99764 * 25 24 13 47 47 H 1.08990 * 109.47524 * 179.97438 * 25 24 13 48 48 H 1.09006 * 109.46727 * 179.97438 * 26 25 24 49 49 H 1.08997 * 109.47186 * 60.00957 * 26 25 24 50 50 H 1.08995 * 109.47583 * 300.00130 * 27 26 25 51 51 H 1.09005 * 109.47712 * 180.02562 * 27 26 25 52 52 H 1.09003 * 109.47177 * 59.99778 * 28 13 12 53 53 H 1.09002 * 109.47183 * 179.97438 * 28 13 12 54 54 H 1.09003 * 109.47253 * 59.99904 * 29 3 2 55 55 H 1.08995 * 109.47404 * 300.00110 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 2.8406 3.1688 -1.4426 7 6 4.1893 3.1261 -0.7214 8 6 3.9818 2.6602 0.7211 9 1 3.3169 3.3544 1.2350 10 6 5.3103 2.6176 1.4312 11 8 5.7184 1.5725 1.8920 12 7 6.0450 3.7408 1.5543 13 6 7.2862 3.7227 2.3324 14 6 8.2775 2.7512 1.6886 15 7 8.5321 3.1589 0.3048 16 6 9.4707 2.4981 -0.4420 17 1 10.0230 1.6763 -0.0110 18 6 9.7123 2.8848 -1.7532 19 7 10.6148 2.2501 -2.4707 20 14 8.7575 4.3069 -2.4986 21 1 7.5218 3.7910 -3.1405 22 1 8.3944 5.2730 -1.4309 23 1 9.5974 4.9871 -3.5170 24 6 7.8923 5.1272 2.3583 25 6 6.9010 6.0987 3.0021 26 6 6.5997 5.6466 4.4324 27 6 5.9936 4.2422 4.4064 28 6 6.9849 3.2707 3.7627 29 6 3.3588 1.2634 0.7213 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 2.8831 1.0774 -1.9563 34 1 1.2569 1.8013 -1.9564 35 1 2.9880 3.5008 -2.4702 36 1 2.1757 3.8630 -0.9287 37 1 4.6333 4.1216 -0.7218 38 1 4.8542 2.4318 -1.2353 39 1 5.7520 4.5611 1.1276 40 1 7.8591 1.7447 1.6998 41 1 9.2126 2.7622 2.2485 42 1 8.0358 3.8969 -0.0825 43 1 10.7833 2.5201 -3.3871 44 1 8.8156 5.1138 2.9376 45 1 8.1070 5.4492 1.3394 46 1 5.9776 6.1122 2.4232 47 1 7.3330 7.0992 3.0210 48 1 5.8939 6.3391 4.8912 49 1 7.5231 5.6332 5.0113 50 1 5.0701 4.2556 3.8275 51 1 5.7785 3.9202 5.4254 52 1 6.5530 2.2700 3.7442 53 1 7.9085 3.2567 4.3415 54 1 4.0242 0.5694 0.2076 55 1 3.2110 0.9315 1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485454481.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:58 Heat of formation + Delta-G solvation = -121.593330 kcal Electronic energy + Delta-G solvation = -32444.256973 eV Core-core repulsion = 28479.166605 eV Total energy + Delta-G solvation = -3965.090368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.86458 -40.24381 -38.85360 -37.11689 -36.54732 -34.69066 -33.47003 -32.17559 -31.67959 -31.31839 -30.45105 -27.31789 -27.20090 -24.95906 -24.41998 -23.40285 -23.33223 -22.11501 -21.49901 -20.78196 -20.18067 -19.68836 -18.52460 -17.23245 -16.88338 -16.53680 -16.48150 -16.41666 -16.01494 -16.00111 -15.43823 -15.26519 -15.05422 -14.94853 -14.75983 -14.63869 -14.40526 -14.20280 -13.92261 -13.73801 -13.45327 -13.37005 -13.10066 -12.97655 -12.93532 -12.73256 -12.65973 -12.61485 -12.35215 -12.12425 -12.05371 -11.99660 -11.86712 -11.66243 -11.49840 -11.49583 -11.43545 -11.13960 -11.06053 -11.04106 -10.51765 -10.26950 -9.87154 -9.25823 -8.03886 -5.36531 1.29542 1.38146 1.45161 1.77441 2.21814 2.46430 2.84753 3.26827 3.53171 3.57486 3.68572 3.82245 3.84803 3.87246 3.94995 4.08502 4.13693 4.21629 4.24932 4.31981 4.39556 4.40668 4.43307 4.51542 4.53990 4.55845 4.61043 4.62183 4.62319 4.79206 4.83675 4.86202 4.87003 4.96254 5.02369 5.09490 5.12234 5.15766 5.17654 5.18663 5.21188 5.26396 5.27673 5.32102 5.38486 5.42125 5.47368 5.55008 5.70911 5.76983 6.18984 6.33022 6.70945 7.06562 7.43101 7.80780 8.05908 9.18581 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.004776 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.033334 B = 5861.624004 C = 7919.158416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.096 3.904 4 H 0.089 0.911 5 C -0.142 4.142 6 C -0.105 4.105 7 C -0.118 4.118 8 C -0.089 4.089 9 H 0.136 0.864 10 C 0.516 3.484 11 O -0.571 6.571 12 N -0.705 5.705 13 C 0.183 3.817 14 C 0.144 3.856 15 N -0.741 5.741 16 C -0.235 4.235 17 H 0.042 0.958 18 C -0.067 4.067 19 N -0.987 5.987 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.241 1.241 23 H -0.294 1.294 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.105 4.105 28 C -0.123 4.123 29 C -0.092 4.092 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.034 0.966 39 H 0.408 0.592 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.057 0.943 53 H 0.068 0.932 54 H 0.037 0.963 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.460 11.339 10.843 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.039 3.961 4 H 0.107 0.893 5 C -0.180 4.180 6 C -0.143 4.143 7 C -0.156 4.156 8 C -0.110 4.110 9 H 0.154 0.846 10 C 0.304 3.696 11 O -0.449 6.449 12 N -0.357 5.357 13 C 0.097 3.903 14 C 0.017 3.983 15 N -0.387 5.387 16 C -0.366 4.366 17 H 0.060 0.940 18 C -0.257 4.257 19 N -0.638 5.638 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.165 1.165 23 H -0.221 1.221 24 C -0.155 4.155 25 C -0.150 4.150 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.162 4.162 29 C -0.131 4.131 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.053 0.947 39 H 0.245 0.755 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.076 0.924 53 H 0.087 0.913 54 H 0.056 0.944 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.897 10.283 11.175 28.314 hybrid contribution 0.406 0.109 -1.225 1.295 sum -23.491 10.392 9.950 27.547 Atomic orbital electron populations 1.22974 0.79501 1.03600 1.01058 1.87918 1.21556 1.28882 1.95218 1.22135 0.93832 0.84499 0.95635 0.89280 1.22063 1.01696 0.97479 0.96783 1.21453 0.95010 0.96379 1.01411 1.21623 0.99038 1.01718 0.93239 1.21236 0.93548 0.99092 0.97159 0.84642 1.20969 0.86775 0.83057 0.78846 1.90655 1.72529 1.31631 1.50135 1.45905 1.23550 1.12728 1.53551 1.20411 0.83210 0.95697 0.90979 1.21144 0.95668 0.97048 0.84436 1.42380 1.46117 1.39364 1.10818 1.18998 1.12334 1.10835 0.94416 0.94004 1.25567 1.00484 1.02844 0.96840 1.69917 1.38516 1.45574 1.09814 0.85383 0.78149 0.79672 0.78500 1.20208 1.16506 1.22104 1.21764 0.99637 0.92539 1.01605 1.21542 0.98837 0.98222 0.96350 1.21522 1.01199 0.95871 0.96476 1.21407 0.97835 0.94786 1.00232 1.21804 1.00680 1.00199 0.93544 1.21253 0.95457 0.95611 1.00745 0.92702 0.92859 0.89165 0.93741 0.89954 0.90683 0.88423 0.89687 0.94680 0.75510 0.96477 0.96161 0.79861 0.93382 0.90742 0.92385 0.90835 0.90369 0.90145 0.92038 0.91887 0.91463 0.92412 0.91341 0.94377 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.42 -9.91 10.35 -148.98 -1.54 -11.45 16 3 C 0.10 1.96 2.61 30.59 0.08 2.04 16 4 H 0.09 1.28 7.79 -2.39 -0.02 1.26 16 5 C -0.14 -2.74 5.54 30.59 0.17 -2.57 16 6 C -0.11 -1.70 5.92 30.60 0.18 -1.52 16 7 C -0.12 -2.64 5.10 30.60 0.16 -2.48 16 8 C -0.09 -2.00 2.53 -11.56 -0.03 -2.03 16 9 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 10 C 0.52 15.71 6.56 87.66 0.58 16.29 16 11 O -0.57 -22.97 12.23 -3.03 -0.04 -23.01 16 12 N -0.70 -18.73 3.46 -422.94 -1.46 -20.19 16 13 C 0.18 5.52 0.32 3.60 0.00 5.52 16 14 C 0.14 6.22 4.96 86.38 0.43 6.65 16 15 N -0.74 -36.25 4.92 -343.46 -1.69 -37.94 16 16 C -0.23 -14.29 10.47 84.03 0.88 -13.41 16 17 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 18 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 19 N -0.99 -65.79 13.97 21.65 0.30 -65.49 16 20 Si 0.96 45.50 27.73 68.60 1.90 47.40 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.24 -9.83 6.52 99.48 0.65 -9.18 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 C -0.12 -2.98 4.62 30.59 0.14 -2.84 16 25 C -0.11 -1.88 5.75 30.59 0.18 -1.71 16 26 C -0.11 -1.76 5.92 30.59 0.18 -1.58 16 27 C -0.11 -2.02 5.77 30.59 0.18 -1.85 16 28 C -0.12 -3.36 4.49 30.59 0.14 -3.22 16 29 C -0.09 -2.44 4.14 30.58 0.13 -2.31 16 30 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.05 0.63 7.87 -2.38 -0.02 0.61 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.26 7.87 -2.39 -0.02 1.24 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.08 1.60 7.47 -2.39 -0.02 1.58 16 38 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.41 8.31 6.69 -92.71 -0.62 7.69 16 40 H 0.02 0.87 6.22 -2.38 -0.01 0.85 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.37 16.37 4.38 -92.71 -0.41 15.96 16 43 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.06 1.67 7.09 -2.39 -0.02 1.65 16 46 H 0.07 1.04 6.91 -2.39 -0.02 1.02 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.06 1.17 7.60 -2.39 -0.02 1.16 16 51 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.06 1.91 6.17 -2.39 -0.01 1.90 16 53 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 55 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -81.61 406.97 2.33 -79.28 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -0.22 Total: 38.42 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 5.07 Total: -7.02 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -2.85 Total: -123.62 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.58 Total: -34.45 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal Total: -81.61 2.33 -79.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485454481.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.314 kcal (2) G-P(sol) polarization free energy of solvation -81.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds