Wall clock time and date at job start Tue Mar 31 2020 21:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46984 * 2 1 4 4 C 1.42897 * 114.00126 * 185.16163 * 3 2 1 5 5 H 1.09004 * 109.47140 * 341.78971 * 4 3 2 6 6 C 1.50692 * 109.47575 * 221.78188 * 4 3 2 7 7 O 1.21280 * 120.00131 * 352.11726 * 6 4 3 8 8 N 1.34778 * 120.00125 * 172.11005 * 6 4 3 9 9 C 1.48108 * 127.84524 * 185.25816 * 8 6 4 10 10 C 1.54315 * 104.71483 * 140.22651 * 9 8 6 11 11 C 1.53004 * 112.07224 * 146.94439 * 10 9 8 12 12 C 1.53756 * 109.07885 * 271.63735 * 10 9 8 13 13 N 1.47208 * 106.40201 * 94.28904 * 12 10 9 14 14 C 1.36941 * 126.69889 * 211.29371 * 13 12 10 15 15 H 1.07994 * 119.99372 * 152.33544 * 14 13 12 16 16 C 1.38807 * 120.00308 * 332.32939 * 14 13 12 17 17 N 1.31618 * 120.00013 * 4.31340 * 16 14 13 18 18 Si 1.86798 * 120.00136 * 184.31254 * 16 14 13 19 19 H 1.48504 * 109.46882 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47284 * 120.00260 * 18 16 14 21 21 H 1.48502 * 109.47202 * 240.00297 * 18 16 14 22 22 C 1.47205 * 106.59293 * 31.55783 * 13 12 10 23 23 C 1.54031 * 106.26298 * 328.37183 * 22 13 12 24 24 C 1.53005 * 112.76771 * 141.67853 * 23 22 13 25 25 C 1.48106 * 127.84491 * 5.26114 * 8 6 4 26 26 C 1.53008 * 109.46595 * 101.78104 * 4 3 2 27 27 C 1.52989 * 109.47321 * 294.06650 * 26 4 3 28 28 C 1.52998 * 109.46898 * 54.06924 * 26 4 3 29 29 H 1.08998 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46634 * 299.99738 * 1 2 3 31 31 H 1.09000 * 109.47030 * 59.99651 * 1 2 3 32 32 H 1.08998 * 109.47324 * 240.00550 * 2 1 3 33 33 H 1.08994 * 109.47412 * 120.00146 * 2 1 3 34 34 H 1.09005 * 110.38937 * 21.41318 * 9 8 6 35 35 H 1.09002 * 110.38957 * 259.03918 * 9 8 6 36 36 H 1.09005 * 109.46822 * 182.00955 * 11 10 9 37 37 H 1.09001 * 109.47268 * 302.00641 * 11 10 9 38 38 H 1.08996 * 109.47232 * 62.01572 * 11 10 9 39 39 H 1.08998 * 110.07416 * 335.05548 * 12 10 9 40 40 H 1.08996 * 110.06870 * 213.52618 * 12 10 9 41 41 H 0.97004 * 120.00597 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.06174 * 87.68598 * 22 13 12 43 43 H 1.08997 * 110.06495 * 209.21264 * 22 13 12 44 44 H 1.09000 * 109.47400 * 301.37583 * 24 23 22 45 45 H 1.09001 * 109.47033 * 61.38255 * 24 23 22 46 46 H 1.09005 * 109.46844 * 181.37982 * 24 23 22 47 47 H 1.09005 * 110.38984 * 338.58867 * 25 8 6 48 48 H 1.09005 * 110.39085 * 100.85724 * 25 8 6 49 49 H 1.09006 * 109.46636 * 174.06624 * 26 4 3 50 50 H 1.09003 * 109.47489 * 65.96661 * 27 26 4 51 51 H 1.08997 * 109.47167 * 185.96657 * 27 26 4 52 52 H 1.08998 * 109.47460 * 305.96283 * 27 26 4 53 53 H 1.09001 * 109.47483 * 65.20121 * 28 26 4 54 54 H 1.09001 * 109.47258 * 185.19957 * 28 26 4 55 55 H 1.09000 * 109.47275 * 305.20513 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4620 -0.1174 5 1 3.8897 0.5089 0.1368 6 6 3.9232 2.5294 0.8228 7 8 3.1320 3.2299 1.4180 8 7 5.2473 2.7056 1.0025 9 6 5.9217 3.6187 1.9539 10 6 7.1236 2.8111 2.4872 11 6 8.3270 3.7053 2.7928 12 6 6.6792 2.0009 3.7160 13 7 6.3048 0.6661 3.2207 14 6 5.3480 -0.1622 3.7438 15 1 4.8416 -0.8721 3.1067 16 6 5.0292 -0.0895 5.0927 17 7 5.5841 0.8318 5.8514 18 14 3.8125 -1.2992 5.8315 19 1 3.3354 -2.2283 4.7758 20 1 4.4778 -2.0747 6.9090 21 1 2.6575 -0.5566 6.3969 22 6 7.1643 0.3932 2.0571 23 6 7.4400 1.7565 1.3953 24 6 8.8714 1.8808 0.8694 25 6 6.3584 2.0302 0.2933 26 6 3.7898 1.8387 -1.5551 27 6 3.4179 0.6890 -2.4933 28 6 3.0221 3.0980 -1.9622 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.2485 3.8815 2.7700 35 1 6.2652 4.5164 1.4399 36 1 9.1603 3.0897 3.1315 37 1 8.6169 4.2451 1.8913 38 1 8.0611 4.4180 3.5734 39 1 5.8211 2.4786 4.1888 40 1 7.5011 1.9189 4.4272 41 1 5.3611 0.8829 6.7941 42 1 8.0992 -0.0636 2.3818 43 1 6.6489 -0.2649 1.3577 44 1 9.5739 1.7390 1.6907 45 1 9.0456 1.1215 0.1070 46 1 9.0145 2.8706 0.4358 47 1 6.0151 1.0930 -0.1450 48 1 6.7682 2.6818 -0.4784 49 1 4.8611 2.0292 -1.6206 50 1 2.3347 0.5679 -2.5082 51 1 3.7724 0.9120 -3.4996 52 1 3.8816 -0.2323 -2.1407 53 1 3.3549 3.9390 -1.3539 54 1 3.2096 3.3137 -3.0140 55 1 1.9548 2.9384 -1.8085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485667303.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:24 Heat of formation + Delta-G solvation = -81.190363 kcal Electronic energy + Delta-G solvation = -33469.919087 eV Core-core repulsion = 29506.580723 eV Total energy + Delta-G solvation = -3963.338364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.87755 -40.45983 -38.67775 -36.46527 -35.79054 -34.52133 -33.09354 -32.51574 -32.13374 -29.17370 -28.15712 -28.10579 -27.01282 -26.56282 -26.35789 -24.00827 -23.70396 -21.95030 -21.33476 -20.59405 -19.21849 -18.87516 -18.00591 -17.71764 -17.14899 -16.78498 -16.69755 -16.45480 -15.63957 -15.48809 -15.25520 -15.04210 -14.86967 -14.71107 -14.42441 -14.28225 -14.06888 -13.70243 -13.63253 -13.37405 -13.33635 -13.23437 -13.04843 -12.96875 -12.95519 -12.90500 -12.78167 -12.50087 -12.44736 -12.35488 -12.19032 -12.10528 -11.95493 -11.90526 -11.86852 -11.66470 -11.48852 -11.15965 -11.04313 -10.96254 -10.69894 -10.30728 -9.63824 -8.67964 -7.99159 -5.37990 1.34152 1.36039 1.44877 1.58070 1.82903 2.40568 2.82753 3.21535 3.38544 3.51509 3.66049 3.70237 3.74116 3.86077 3.93912 4.09354 4.15536 4.18135 4.24043 4.36336 4.38415 4.41932 4.44067 4.53738 4.62147 4.68960 4.71943 4.76346 4.82132 4.82336 4.87248 4.91476 4.94448 4.97214 4.98104 4.99354 5.09950 5.13405 5.16711 5.20684 5.24516 5.29941 5.35101 5.37480 5.42487 5.44665 5.46985 5.54722 5.62996 5.79434 6.10936 6.23012 6.63747 7.03755 7.19838 7.71104 8.48380 9.15163 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008674 B = 0.006071 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.248996 B = 4611.175930 C = 6699.004573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.378 6.378 4 C 0.090 3.910 5 H 0.083 0.917 6 C 0.529 3.471 7 O -0.588 6.588 8 N -0.608 5.608 9 C 0.127 3.873 10 C -0.090 4.090 11 C -0.116 4.116 12 C 0.195 3.805 13 N -0.609 5.609 14 C -0.236 4.236 15 H 0.066 0.934 16 C -0.052 4.052 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.262 1.262 20 H -0.283 1.283 21 H -0.300 1.300 22 C 0.139 3.861 23 C -0.072 4.072 24 C -0.116 4.116 25 C 0.113 3.887 26 C -0.101 4.101 27 C -0.143 4.143 28 C -0.135 4.135 29 H 0.095 0.905 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.007 0.993 40 H -0.007 1.007 41 H 0.247 0.753 42 H 0.017 0.983 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.056 0.944 51 H 0.084 0.916 52 H 0.062 0.938 53 H 0.028 0.972 54 H 0.082 0.918 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 1.065 -21.231 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.296 6.296 4 C 0.028 3.972 5 H 0.101 0.899 6 C 0.319 3.681 7 O -0.468 6.468 8 N -0.341 5.341 9 C 0.004 3.996 10 C -0.092 4.092 11 C -0.174 4.174 12 C 0.069 3.931 13 N -0.332 5.332 14 C -0.366 4.366 15 H 0.084 0.916 16 C -0.247 4.247 17 N -0.585 5.585 18 Si 0.788 3.212 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.228 1.228 22 C 0.014 3.986 23 C -0.074 4.074 24 C -0.174 4.174 25 C -0.009 4.009 26 C -0.120 4.120 27 C -0.200 4.200 28 C -0.192 4.192 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.011 0.989 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.129 0.871 49 H 0.118 0.882 50 H 0.076 0.924 51 H 0.103 0.897 52 H 0.081 0.919 53 H 0.047 0.953 54 H 0.101 0.899 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.124 1.493 -20.735 21.022 hybrid contribution -0.984 -0.757 2.045 2.392 sum 2.139 0.736 -18.690 18.826 Atomic orbital electron populations 1.21731 0.92341 1.03502 1.02589 1.22899 0.96929 0.82778 1.00642 1.87966 1.19358 1.27850 1.94469 1.21954 0.83355 0.96507 0.95355 0.89880 1.20714 0.80627 0.84517 0.82282 1.90638 1.55564 1.49204 1.51357 1.48662 1.04261 1.42038 1.39097 1.22328 0.92562 0.92915 0.91813 1.22461 0.95113 0.95582 0.96036 1.21619 0.95129 0.98254 1.02360 1.20894 0.94956 0.85241 0.92024 1.44435 1.40155 1.15191 1.33454 1.19101 1.12655 1.13952 0.90855 0.91609 1.25880 1.01957 1.00116 0.96772 1.70106 1.47414 1.35492 1.05505 0.85290 0.78020 0.79128 0.78716 1.18587 1.20960 1.22801 1.21631 0.92884 0.95133 0.88969 1.22819 0.96954 0.93842 0.93822 1.21612 0.90928 1.03642 1.01186 1.23198 0.85249 0.98254 0.94173 1.21618 1.01703 0.97808 0.90902 1.21877 1.02029 0.96592 0.99524 1.21654 1.00373 0.95679 1.01541 0.88664 0.93830 0.90910 0.90139 0.95253 0.95084 0.88646 0.91868 0.88922 0.93566 0.97490 0.98891 0.94385 0.96485 0.93730 0.92409 0.90519 0.89611 0.89762 0.87110 0.88213 0.92447 0.89721 0.91852 0.95314 0.89886 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.04 1.21 6.04 71.98 0.43 1.64 16 3 O -0.38 -13.19 8.31 -130.06 -1.08 -14.27 16 4 C 0.09 2.87 1.64 29.85 0.05 2.92 16 5 H 0.08 2.64 7.31 -2.38 -0.02 2.62 16 6 C 0.53 21.56 6.39 87.65 0.56 22.12 16 7 O -0.59 -30.31 16.82 15.89 0.27 -30.04 16 8 N -0.61 -21.32 3.32 -803.39 -2.67 -23.99 16 9 C 0.13 4.56 6.03 86.52 0.52 5.08 16 10 C -0.09 -3.07 1.06 -50.77 -0.05 -3.13 16 11 C -0.12 -3.03 7.50 71.98 0.54 -2.49 16 12 C 0.19 9.67 4.57 86.50 0.40 10.07 16 13 N -0.61 -31.04 3.36 -694.95 -2.34 -33.37 16 14 C -0.24 -13.58 10.22 84.03 0.86 -12.72 16 15 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 16 C -0.05 -3.12 5.48 84.86 0.46 -2.65 16 17 N -0.94 -59.31 11.17 21.65 0.24 -59.07 16 18 Si 0.96 48.04 29.56 68.60 2.03 50.07 16 19 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 21 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 22 C 0.14 5.31 6.35 86.59 0.55 5.86 16 23 C -0.07 -2.03 1.15 -49.79 -0.06 -2.09 16 24 C -0.12 -2.13 7.65 71.98 0.55 -1.58 16 25 C 0.11 2.80 4.59 87.41 0.40 3.21 16 26 C -0.10 -2.24 2.54 -10.79 -0.03 -2.26 16 27 C -0.14 -2.29 8.02 71.98 0.58 -1.72 16 28 C -0.14 -3.20 8.81 71.98 0.63 -2.57 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.71 6.13 -2.39 -0.01 1.70 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.03 1.41 7.21 -2.38 -0.02 1.40 16 35 H 0.10 2.71 7.97 -2.39 -0.02 2.69 16 36 H 0.06 1.64 7.10 -2.38 -0.02 1.62 16 37 H 0.09 1.69 7.16 -2.39 -0.02 1.67 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.01 0.40 6.55 -2.39 -0.02 0.38 16 40 H -0.01 -0.37 7.85 -2.39 -0.02 -0.39 16 41 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.02 0.67 7.93 -2.39 -0.02 0.65 16 43 H 0.04 1.61 7.47 -2.39 -0.02 1.59 16 44 H 0.06 1.17 7.09 -2.39 -0.02 1.15 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.13 7.17 -2.38 -0.02 1.12 16 47 H 0.08 1.93 5.96 -2.38 -0.01 1.91 16 48 H 0.11 1.86 7.99 -2.38 -0.02 1.84 16 49 H 0.10 1.84 5.99 -2.38 -0.01 1.83 16 50 H 0.06 0.99 6.84 -2.39 -0.02 0.97 16 51 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.03 0.80 7.58 -2.39 -0.02 0.78 16 54 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 55 H 0.05 1.35 7.36 -2.39 -0.02 1.33 16 Total: -1.00 -83.57 410.26 4.44 -79.13 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.85 Total: 14.49 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 7.14 Total: 17.04 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -4.76 Total: -116.43 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.81 Total: -44.31 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -83.57 4.44 -79.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485667303.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.059 kcal (2) G-P(sol) polarization free energy of solvation -83.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds