Wall clock time and date at job start Tue Mar 31 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47364 * 2 1 4 4 C 1.42897 * 114.00371 * 182.67661 * 3 2 1 5 5 H 1.09008 * 109.46935 * 20.14883 * 4 3 2 6 6 C 1.50699 * 109.47642 * 140.14811 * 4 3 2 7 7 O 1.21280 * 119.99452 * 11.08401 * 6 4 3 8 8 N 1.34770 * 120.00163 * 191.08307 * 6 4 3 9 9 C 1.48113 * 127.84450 * 184.80416 * 8 6 4 10 10 C 1.54319 * 104.71537 * 140.22084 * 9 8 6 11 11 C 1.53000 * 112.07339 * 146.94342 * 10 9 8 12 12 C 1.53753 * 109.08280 * 271.64226 * 10 9 8 13 13 N 1.47202 * 106.40660 * 94.28699 * 12 10 9 14 14 C 1.36931 * 126.70687 * 211.29566 * 13 12 10 15 15 H 1.08007 * 120.00112 * 20.20072 * 14 13 12 16 16 C 1.38816 * 120.00193 * 200.20403 * 14 13 12 17 17 N 1.31615 * 119.99838 * 358.74802 * 16 14 13 18 18 Si 1.86799 * 119.99898 * 178.74802 * 16 14 13 19 19 H 1.48499 * 109.47451 * 60.00221 * 18 16 14 20 20 H 1.48498 * 109.47080 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47431 * 299.99669 * 18 16 14 22 22 C 1.47201 * 106.59207 * 31.55933 * 13 12 10 23 23 C 1.54039 * 106.26547 * 328.36937 * 22 13 12 24 24 C 1.53002 * 112.77183 * 141.67604 * 23 22 13 25 25 C 1.48111 * 127.84899 * 4.80642 * 8 6 4 26 26 C 1.53003 * 109.47211 * 260.15512 * 4 3 2 27 27 C 1.53005 * 109.46690 * 306.21437 * 26 4 3 28 28 C 1.52993 * 109.47346 * 66.21340 * 26 4 3 29 29 H 1.09000 * 109.47230 * 60.00150 * 1 2 3 30 30 H 1.08999 * 109.47209 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47088 * 300.00018 * 1 2 3 32 32 H 1.09006 * 109.47199 * 240.00109 * 2 1 3 33 33 H 1.09001 * 109.46764 * 120.00460 * 2 1 3 34 34 H 1.09007 * 110.38664 * 21.41817 * 9 8 6 35 35 H 1.08995 * 110.48786 * 259.08466 * 9 8 6 36 36 H 1.08997 * 109.46975 * 182.01253 * 11 10 9 37 37 H 1.09001 * 109.47450 * 302.01694 * 11 10 9 38 38 H 1.09001 * 109.47008 * 62.01628 * 11 10 9 39 39 H 1.09004 * 110.07224 * 335.05463 * 12 10 9 40 40 H 1.09001 * 110.07220 * 213.52259 * 12 10 9 41 41 H 0.97004 * 119.99957 * 180.02562 * 17 16 14 42 42 H 1.08998 * 110.07210 * 87.68272 * 22 13 12 43 43 H 1.09003 * 110.07247 * 209.21352 * 22 13 12 44 44 H 1.09001 * 109.47093 * 301.38114 * 24 23 22 45 45 H 1.08998 * 109.47225 * 61.38363 * 24 23 22 46 46 H 1.08999 * 109.47432 * 181.38372 * 24 23 22 47 47 H 1.09009 * 110.38730 * 338.58916 * 25 8 6 48 48 H 1.08991 * 110.39123 * 100.85927 * 25 8 6 49 49 H 1.08998 * 109.47137 * 186.21912 * 26 4 3 50 50 H 1.08998 * 109.47103 * 184.13018 * 27 26 4 51 51 H 1.08995 * 109.47037 * 304.12989 * 27 26 4 52 52 H 1.09000 * 109.46886 * 64.13109 * 27 26 4 53 53 H 1.09008 * 109.47118 * 57.49860 * 28 26 4 54 54 H 1.09001 * 109.47359 * 177.49296 * 28 26 4 55 55 H 1.09002 * 109.47478 * 297.49828 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4295 1.4605 -0.0610 5 1 3.8516 0.5332 -0.4484 6 6 3.8042 2.6017 -0.9711 7 8 2.9533 3.3767 -1.3535 8 7 5.0846 2.7610 -1.3601 9 6 5.6599 3.8648 -2.1629 10 6 7.0287 4.1518 -1.5108 11 6 8.0715 4.6006 -2.5365 12 6 6.8434 5.1836 -0.3861 13 7 6.6768 4.4162 0.8589 14 6 5.9334 4.7784 1.9504 15 1 5.1513 5.5165 1.8503 16 6 6.1850 4.1969 3.1855 17 7 7.1216 3.2796 3.3025 18 14 5.1943 4.7164 4.6816 19 1 3.7549 4.4411 4.4421 20 1 5.6531 3.9517 5.8690 21 1 5.3871 6.1690 4.9230 22 6 7.4707 3.1864 0.7041 23 6 7.4381 2.8379 -0.7960 24 6 8.7740 2.2943 -1.3069 25 6 6.2362 1.8721 -1.0819 26 6 3.9807 1.7247 1.3417 27 6 3.2737 2.9392 1.9470 28 6 3.7361 0.4996 2.2249 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.0212 4.7466 -2.1087 35 1 5.7906 3.5546 -3.1995 36 1 9.0280 4.7567 -2.0377 37 1 8.1820 3.8327 -3.3022 38 1 7.7473 5.5322 -3.0003 39 1 5.9556 5.7873 -0.5749 40 1 7.7233 5.8231 -0.3164 41 1 7.2972 2.8731 4.1655 42 1 8.4968 3.3602 1.0279 43 1 7.0263 2.3785 1.2855 44 1 9.5570 3.0325 -1.1331 45 1 9.0184 1.3738 -0.7767 46 1 8.6985 2.0894 -2.3748 47 1 6.0329 1.2485 -0.2113 48 1 6.4549 1.2509 -1.9503 49 1 5.0512 1.9206 1.2805 50 1 3.7166 3.1721 2.9153 51 1 3.3863 3.7944 1.2808 52 1 2.2147 2.7160 2.0761 53 1 4.2023 -0.3748 1.7706 54 1 4.1680 0.6705 3.2110 55 1 2.6637 0.3302 2.3223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485667304.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:29 Heat of formation + Delta-G solvation = -71.432962 kcal Electronic energy + Delta-G solvation = -34249.974792 eV Core-core repulsion = 30287.059541 eV Total energy + Delta-G solvation = -3962.915251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87504 -40.37718 -38.66593 -36.34356 -35.84522 -34.39837 -32.91509 -32.52736 -32.07148 -29.14793 -28.28185 -27.91201 -26.96121 -26.49737 -26.29514 -23.92795 -23.60928 -21.88478 -21.33112 -20.54859 -19.21856 -18.64557 -17.92562 -17.75797 -17.09223 -16.82344 -16.60566 -16.34910 -15.63285 -15.45852 -15.23291 -14.92880 -14.77474 -14.61003 -14.39301 -14.22900 -14.11240 -13.67254 -13.61159 -13.29532 -13.27152 -13.25112 -13.20668 -13.03624 -12.87127 -12.79531 -12.57167 -12.45841 -12.39890 -12.29017 -12.09213 -12.05987 -11.91223 -11.75869 -11.64760 -11.53153 -11.43137 -11.08554 -10.99132 -10.84800 -10.60051 -10.24790 -9.61482 -8.63743 -7.82628 -5.14395 1.39073 1.41443 1.45814 1.56571 1.86924 2.48968 2.88421 3.35121 3.45250 3.56840 3.73227 3.77403 3.80978 3.87334 3.97729 4.15521 4.19789 4.24784 4.31156 4.40760 4.43119 4.46540 4.48295 4.58626 4.68423 4.70696 4.75730 4.79329 4.82703 4.84789 4.88615 4.92270 4.98549 5.01903 5.01989 5.04123 5.11318 5.18276 5.26508 5.29381 5.30326 5.32144 5.38979 5.43823 5.46101 5.48983 5.57777 5.62807 5.73344 5.92901 6.19733 6.33469 6.63117 7.19740 7.20912 7.83656 8.58131 9.29063 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009090 B = 0.006821 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.603160 B = 4104.142418 C = 6005.701028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 O -0.380 6.380 4 C 0.096 3.904 5 H 0.105 0.895 6 C 0.535 3.465 7 O -0.582 6.582 8 N -0.607 5.607 9 C 0.125 3.875 10 C -0.076 4.076 11 C -0.117 4.117 12 C 0.139 3.861 13 N -0.604 5.604 14 C -0.212 4.212 15 H 0.044 0.956 16 C -0.019 4.019 17 N -0.927 5.927 18 Si 0.924 3.076 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.292 1.292 22 C 0.193 3.807 23 C -0.087 4.087 24 C -0.115 4.115 25 C 0.111 3.889 26 C -0.097 4.097 27 C -0.112 4.112 28 C -0.137 4.137 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.017 0.983 40 H 0.014 0.986 41 H 0.247 0.753 42 H -0.008 1.008 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.105 0.895 49 H 0.084 0.916 50 H 0.043 0.957 51 H 0.021 0.979 52 H 0.044 0.956 53 H 0.076 0.924 54 H 0.046 0.954 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -11.224 -11.741 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.037 4.037 3 O -0.299 6.299 4 C 0.035 3.965 5 H 0.123 0.877 6 C 0.324 3.676 7 O -0.462 6.462 8 N -0.340 5.340 9 C 0.002 3.998 10 C -0.078 4.078 11 C -0.175 4.175 12 C 0.013 3.987 13 N -0.327 5.327 14 C -0.341 4.341 15 H 0.061 0.939 16 C -0.214 4.214 17 N -0.575 5.575 18 Si 0.754 3.246 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.219 1.219 22 C 0.067 3.933 23 C -0.089 4.089 24 C -0.172 4.172 25 C -0.011 4.011 26 C -0.115 4.115 27 C -0.169 4.169 28 C -0.194 4.194 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.057 0.943 42 H 0.010 0.990 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.123 0.877 49 H 0.102 0.898 50 H 0.062 0.938 51 H 0.040 0.960 52 H 0.063 0.937 53 H 0.095 0.905 54 H 0.065 0.935 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.159 -10.727 -11.648 15.877 hybrid contribution -0.504 1.010 1.648 1.997 sum -1.662 -9.717 -10.001 14.043 Atomic orbital electron populations 1.21742 0.92817 1.03502 1.02297 1.23012 0.96596 0.82619 1.01461 1.88021 1.18862 1.28385 1.94649 1.21868 0.83453 0.96656 0.94560 0.87732 1.20474 0.80755 0.86657 0.79700 1.90619 1.49730 1.47678 1.58154 1.48648 1.06710 1.26042 1.52589 1.22405 0.92752 0.89705 0.94907 1.22283 0.94787 0.95401 0.95322 1.21637 0.96789 1.01808 0.97260 1.21534 0.96464 0.93551 0.87177 1.44409 1.55561 1.19168 1.13572 1.18646 1.09225 1.20034 0.86227 0.93860 1.25049 0.98710 0.99877 0.97787 1.69974 1.34474 1.29785 1.23233 0.86112 0.79594 0.77471 0.81418 1.19980 1.21526 1.21927 1.21053 0.92451 0.89020 0.90727 1.23005 0.95668 0.93822 0.96444 1.21569 0.93160 1.00756 1.01748 1.23131 0.83916 0.92295 1.01799 1.21414 1.00784 0.96514 0.92829 1.21488 0.98599 0.96931 0.99882 1.21835 1.01992 0.96415 0.99188 0.92911 0.88250 0.92758 0.92112 0.91390 0.93456 0.88512 0.91927 0.89463 0.92230 0.96475 0.96873 0.94289 0.99029 0.92972 0.92367 0.92039 0.89531 0.90963 0.87664 0.89839 0.93823 0.95986 0.93735 0.90480 0.93463 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 10.28 71.98 0.74 -2.28 16 2 C 0.04 0.92 6.09 71.98 0.44 1.36 16 3 O -0.38 -13.10 8.51 -130.18 -1.11 -14.21 16 4 C 0.10 3.25 1.60 29.85 0.05 3.30 16 5 H 0.11 2.79 7.41 -2.38 -0.02 2.78 16 6 C 0.53 21.33 6.19 87.66 0.54 21.87 16 7 O -0.58 -28.13 16.83 15.77 0.27 -27.87 16 8 N -0.61 -20.83 3.32 -803.38 -2.67 -23.50 16 9 C 0.12 3.93 6.04 86.52 0.52 4.45 16 10 C -0.08 -2.31 1.06 -50.77 -0.05 -2.36 16 11 C -0.12 -2.53 7.50 71.98 0.54 -1.99 16 12 C 0.14 5.75 6.32 86.50 0.55 6.29 16 13 N -0.60 -29.28 3.38 -694.93 -2.35 -31.63 16 14 C -0.21 -11.58 9.14 84.04 0.77 -10.82 16 15 H 0.04 2.53 7.83 -2.91 -0.02 2.51 16 16 C -0.02 -1.02 4.97 84.86 0.42 -0.60 16 17 N -0.93 -51.21 10.79 21.65 0.23 -50.97 16 18 Si 0.92 45.44 27.86 68.60 1.91 47.35 16 19 H -0.27 -13.24 6.27 99.48 0.62 -12.62 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 22 C 0.19 8.30 4.62 86.60 0.40 8.70 16 23 C -0.09 -2.63 1.15 -49.78 -0.06 -2.69 16 24 C -0.11 -2.51 7.65 71.98 0.55 -1.96 16 25 C 0.11 3.09 5.65 87.40 0.49 3.59 16 26 C -0.10 -3.60 2.50 -10.79 -0.03 -3.63 16 27 C -0.11 -4.99 7.97 71.98 0.57 -4.42 16 28 C -0.14 -4.15 8.29 71.98 0.60 -3.55 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.22 8.06 -2.38 -0.02 1.20 16 33 H 0.07 1.41 5.79 -2.39 -0.01 1.40 16 34 H 0.05 1.78 7.20 -2.38 -0.02 1.76 16 35 H 0.10 2.37 7.97 -2.39 -0.02 2.35 16 36 H 0.06 1.38 7.10 -2.39 -0.02 1.36 16 37 H 0.09 1.37 7.16 -2.39 -0.02 1.36 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.02 0.76 7.36 -2.38 -0.02 0.74 16 40 H 0.01 0.56 7.88 -2.39 -0.02 0.54 16 41 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 42 H -0.01 -0.40 7.93 -2.39 -0.02 -0.42 16 43 H 0.05 2.51 4.85 -2.39 -0.01 2.49 16 44 H 0.06 1.34 7.09 -2.39 -0.02 1.32 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.33 7.17 -2.39 -0.02 1.32 16 47 H 0.07 2.14 5.17 -2.38 -0.01 2.13 16 48 H 0.11 2.09 8.00 -2.39 -0.02 2.07 16 49 H 0.08 3.56 4.88 -2.39 -0.01 3.55 16 50 H 0.04 2.08 4.59 -2.39 -0.01 2.06 16 51 H 0.02 1.10 7.00 -2.39 -0.02 1.08 16 52 H 0.04 1.88 7.68 -2.39 -0.02 1.86 16 53 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 54 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 55 H 0.06 1.81 6.24 -2.39 -0.01 1.79 16 Total: -1.00 -71.88 397.85 4.11 -67.77 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.78 Total: 17.79 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 7.05 Total: 15.28 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.78 Total: -106.11 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.84 Total: -42.08 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.91 Total: 47.35 kcal Total: -71.88 4.11 -67.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485667304.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.663 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds