Wall clock time and date at job start Tue Mar 31 2020 22:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99987 * 2 1 4 4 C 1.53002 * 109.47017 * 179.97438 * 3 2 1 5 5 C 1.50692 * 109.46929 * 269.54983 * 4 3 2 6 6 O 1.21285 * 119.99678 * 236.87493 * 5 4 3 7 7 N 1.34777 * 120.00417 * 56.87549 * 5 4 3 8 8 C 1.46502 * 120.00117 * 359.91477 * 7 5 4 9 9 C 1.46505 * 120.00275 * 179.90820 * 7 5 4 10 10 H 1.09008 * 109.46886 * 0.02562 * 9 7 5 11 11 C 1.52992 * 109.46836 * 120.00102 * 9 7 5 12 12 N 1.46501 * 109.47541 * 305.00312 * 11 9 7 13 13 C 1.36935 * 120.00301 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00136 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00123 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46776 * 60.00550 * 17 15 13 19 19 H 1.48506 * 109.47154 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47467 * 300.00719 * 17 15 13 21 21 C 1.52993 * 109.47246 * 240.00593 * 9 7 5 22 22 C 1.53003 * 117.49630 * 248.62033 * 21 9 7 23 23 C 1.52993 * 60.00048 * 252.50822 * 22 21 9 24 24 C 1.53001 * 109.46763 * 29.54681 * 4 3 2 25 25 C 1.53002 * 109.46763 * 180.02562 * 24 4 3 26 26 C 1.53007 * 109.47155 * 299.99972 * 25 24 4 27 27 C 1.53003 * 109.46952 * 60.00134 * 26 25 24 28 28 C 1.52993 * 109.47141 * 149.54628 * 4 3 2 29 29 H 1.09002 * 109.46695 * 60.00430 * 1 2 3 30 30 H 1.08993 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47039 * 300.00280 * 1 2 3 32 32 H 1.08996 * 109.47135 * 59.99488 * 3 2 1 33 33 H 1.09002 * 109.46876 * 299.99527 * 3 2 1 34 34 H 1.09002 * 109.46734 * 273.97905 * 8 7 5 35 35 H 1.08999 * 109.47024 * 33.97303 * 8 7 5 36 36 H 1.08995 * 109.47414 * 153.97692 * 8 7 5 37 37 H 1.09004 * 109.47426 * 65.00190 * 11 9 7 38 38 H 1.08999 * 109.47240 * 185.00201 * 11 9 7 39 39 H 0.97003 * 119.99596 * 359.97438 * 12 11 9 40 40 H 0.96999 * 120.00355 * 179.97438 * 16 15 13 41 41 H 1.09003 * 115.55567 * 34.32547 * 21 9 7 42 42 H 1.08998 * 117.49735 * 0.02562 * 22 21 9 43 43 H 1.09001 * 117.50259 * 145.02008 * 22 21 9 44 44 H 1.09004 * 117.50516 * 252.50680 * 23 22 21 45 45 H 1.09002 * 117.49811 * 107.48600 * 23 22 21 46 46 H 1.08996 * 109.47793 * 299.99848 * 24 4 3 47 47 H 1.09002 * 109.47374 * 60.00575 * 24 4 3 48 48 H 1.09000 * 109.47163 * 180.02562 * 25 24 4 49 49 H 1.09001 * 109.47210 * 60.00012 * 25 24 4 50 50 H 1.09001 * 109.47094 * 300.00111 * 26 25 24 51 51 H 1.09000 * 109.46805 * 179.97438 * 26 25 24 52 52 H 1.08997 * 109.46577 * 179.97438 * 27 26 25 53 53 H 1.09004 * 109.46757 * 59.99951 * 27 26 25 54 54 H 1.09001 * 109.47123 * 300.00120 * 28 4 3 55 55 H 1.09007 * 109.47090 * 59.99873 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0365 1.1564 1.4216 6 8 4.8470 1.9776 1.7952 7 7 3.5840 0.2185 2.2772 8 6 2.6035 -0.7723 1.8265 9 6 4.0726 0.1898 3.6581 10 1 4.7898 0.9972 3.8066 11 6 2.8960 0.3704 4.6192 12 7 2.1729 1.5988 4.2807 13 6 1.0749 1.9700 5.0099 14 1 0.7417 1.3570 5.8343 15 6 0.3902 3.1342 4.6895 16 7 0.7960 3.8811 3.6846 17 14 -1.1081 3.6403 5.6838 18 1 -0.7179 3.8328 7.1036 19 1 -1.6546 4.9110 5.1435 20 1 -2.1430 2.5791 5.5944 21 6 4.7524 -1.1534 3.9307 22 6 4.0590 -2.1120 4.9009 23 6 5.3331 -1.3806 5.3279 24 6 3.9450 -0.1068 -0.7103 25 6 5.4702 -0.2279 -0.7091 26 6 6.0777 0.9713 -1.4399 27 6 5.6681 2.2627 -0.7289 28 6 4.1424 2.3838 -0.7304 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8901 34 1 1.5987 -0.3633 1.9322 35 1 2.7882 -1.0163 0.7803 36 1 2.6941 -1.6744 2.4314 37 1 2.2228 -0.4826 4.5337 38 1 3.2687 0.4381 5.6412 39 1 2.4725 2.1496 3.5405 40 1 0.3173 4.6944 3.4604 41 1 5.2863 -1.5900 3.0867 42 1 3.1183 -1.7858 5.3445 43 1 4.1365 -3.1796 4.6952 44 1 6.2490 -1.9669 5.4031 45 1 5.2309 -0.5730 6.0528 46 1 3.5127 -0.9611 -0.1896 47 1 3.5827 -0.0863 -1.7381 48 1 5.7621 -1.1477 -1.2160 49 1 5.8323 -0.2485 0.3188 50 1 5.7157 0.9919 -2.4678 51 1 7.1643 0.8852 -1.4386 52 1 6.1013 3.1169 -1.2492 53 1 6.0302 2.2420 0.2991 54 1 3.7800 2.4042 -1.7582 55 1 3.8506 3.3039 -0.2239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485814847.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:02 Heat of formation + Delta-G solvation = -37.942445 kcal Electronic energy + Delta-G solvation = -33716.275334 eV Core-core repulsion = 29754.812341 eV Total energy + Delta-G solvation = -3961.462993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.24187 -39.75628 -38.73112 -37.67545 -36.35776 -35.71394 -33.37847 -32.78840 -31.63672 -29.61030 -27.92680 -27.75713 -26.37003 -25.93727 -24.28080 -23.65548 -23.26343 -23.06502 -21.66698 -20.35429 -19.70270 -19.05073 -17.84098 -17.44720 -17.28930 -17.04420 -16.79902 -16.46365 -16.17240 -16.03575 -15.38668 -15.15844 -14.92284 -14.87858 -14.72170 -14.61437 -14.46326 -14.03109 -13.58569 -13.33847 -13.18673 -13.16117 -13.06107 -12.98098 -12.83916 -12.72941 -12.70065 -12.39984 -12.32465 -12.24680 -12.07514 -12.01017 -11.81072 -11.69383 -11.56733 -11.29715 -10.98781 -10.95953 -10.88454 -10.83524 -10.35417 -10.17463 -9.34481 -9.00493 -7.94184 -5.23976 1.42395 1.45930 1.51954 1.74518 2.13377 2.52988 2.83207 2.94756 3.37747 3.40888 3.66484 3.70161 3.82043 3.92920 4.06203 4.08468 4.14073 4.22130 4.27498 4.33225 4.37103 4.44990 4.47524 4.49199 4.56322 4.60551 4.63299 4.65852 4.69320 4.69494 4.78470 4.81265 4.88491 4.93012 4.95880 5.00768 5.06287 5.06958 5.16967 5.18389 5.25289 5.29491 5.32091 5.32701 5.36748 5.42197 5.45057 5.56373 5.70203 5.84046 6.14914 6.24583 6.61767 7.31056 7.37336 8.07023 8.32104 9.28290 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009627 B = 0.005176 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.652342 B = 5408.163269 C = 6630.976471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.078 3.922 4 C -0.063 4.063 5 C 0.522 3.478 6 O -0.581 6.581 7 N -0.586 5.586 8 C 0.067 3.933 9 C 0.167 3.833 10 H 0.063 0.937 11 C 0.149 3.851 12 N -0.737 5.737 13 C -0.244 4.244 14 H 0.074 0.926 15 C -0.071 4.071 16 N -0.966 5.966 17 Si 0.972 3.028 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.274 1.274 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.169 4.169 24 C -0.105 4.105 25 C -0.119 4.119 26 C -0.111 4.111 27 C -0.132 4.132 28 C -0.091 4.091 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.016 0.984 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.129 0.871 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.021 0.979 39 H 0.371 0.629 40 H 0.248 0.752 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.035 0.965 50 H 0.079 0.921 51 H 0.064 0.936 52 H 0.063 0.937 53 H 0.061 0.939 54 H 0.093 0.907 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 -15.258 -12.114 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.000 4.000 4 C -0.066 4.066 5 C 0.311 3.689 6 O -0.462 6.462 7 N -0.316 5.316 8 C -0.074 4.074 9 C 0.062 3.938 10 H 0.081 0.919 11 C 0.021 3.979 12 N -0.379 5.379 13 C -0.375 4.375 14 H 0.092 0.908 15 C -0.264 4.264 16 N -0.616 5.616 17 Si 0.801 3.199 18 H -0.207 1.207 19 H -0.223 1.223 20 H -0.200 1.200 21 C -0.182 4.182 22 C -0.206 4.206 23 C -0.207 4.207 24 C -0.142 4.142 25 C -0.157 4.157 26 C -0.148 4.148 27 C -0.170 4.170 28 C -0.128 4.128 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.146 0.854 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.107 0.893 49 H 0.054 0.946 50 H 0.098 0.902 51 H 0.083 0.917 52 H 0.082 0.918 53 H 0.080 0.920 54 H 0.112 0.888 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.880 -15.039 -11.766 20.296 hybrid contribution -1.141 1.707 0.919 2.250 sum 5.738 -13.332 -10.847 18.119 Atomic orbital electron populations 1.22810 0.80804 1.03852 0.99640 1.88065 1.20171 1.25999 1.95152 1.22275 0.91763 0.85678 1.00237 1.20835 0.93739 1.00442 0.91586 1.20864 0.80272 0.79494 0.88229 1.90566 1.36411 1.40285 1.78942 1.47691 1.42931 1.31269 1.09747 1.22989 0.91085 0.90585 1.02702 1.20547 0.94679 0.96893 0.81658 0.91925 1.21209 0.92352 0.88926 0.95371 1.42454 1.32301 1.25209 1.37973 1.19553 1.03640 1.04687 1.09665 0.90790 1.25528 1.02758 0.98028 1.00060 1.69865 1.43329 1.16315 1.32102 0.85242 0.79631 0.77003 0.78040 1.20725 1.22284 1.20043 1.22400 1.04761 0.95922 0.95074 1.23190 0.96664 0.98473 1.02231 1.23018 0.98510 1.03210 0.95920 1.21886 0.96022 0.94629 1.01633 1.21583 0.94939 0.99305 0.99867 1.21509 1.00309 0.93452 0.99550 1.21757 0.94631 0.98585 1.02005 1.21365 0.96692 0.94896 0.99887 0.92958 0.87113 0.96510 0.96391 0.90922 0.93672 0.85443 0.91437 0.94618 0.96155 0.79772 0.94276 0.86648 0.89156 0.86423 0.86520 0.89989 0.88386 0.88771 0.89329 0.94593 0.90242 0.91728 0.91781 0.92028 0.88844 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.45 113.37 1.18 1.78 16 2 O -0.37 -9.82 4.92 -148.98 -0.73 -10.56 16 3 C 0.08 2.43 4.78 71.98 0.34 2.77 16 4 C -0.06 -1.88 0.50 -52.93 -0.03 -1.91 16 5 C 0.52 19.85 4.52 87.65 0.40 20.25 16 6 O -0.58 -26.74 12.88 -3.05 -0.04 -26.78 16 7 N -0.59 -20.72 2.24 -822.60 -1.85 -22.57 16 8 C 0.07 1.98 7.36 127.77 0.94 2.92 16 9 C 0.17 6.19 2.58 44.99 0.12 6.31 16 10 H 0.06 2.80 6.90 -2.38 -0.02 2.78 16 11 C 0.15 6.32 4.19 86.38 0.36 6.68 16 12 N -0.74 -39.78 5.43 -343.46 -1.87 -41.65 16 13 C -0.24 -14.07 9.99 84.03 0.84 -13.23 16 14 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 15 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 16 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 17 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 C -0.16 -4.45 4.98 -10.80 -0.05 -4.50 16 22 C -0.17 -3.93 9.46 30.59 0.29 -3.64 16 23 C -0.17 -4.07 9.94 30.59 0.30 -3.77 16 24 C -0.11 -2.30 3.97 30.60 0.12 -2.18 16 25 C -0.12 -2.52 5.70 30.60 0.17 -2.35 16 26 C -0.11 -2.31 5.92 30.60 0.18 -2.13 16 27 C -0.13 -3.69 5.63 30.61 0.17 -3.52 16 28 C -0.09 -2.65 4.22 30.61 0.13 -2.52 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.02 0.76 7.82 -2.39 -0.02 0.74 16 33 H 0.07 1.98 7.81 -2.39 -0.02 1.96 16 34 H 0.04 1.59 6.07 -2.39 -0.01 1.57 16 35 H 0.13 3.19 2.18 -2.39 -0.01 3.18 16 36 H 0.07 1.77 7.17 -2.39 -0.02 1.75 16 37 H 0.04 1.46 6.31 -2.38 -0.02 1.45 16 38 H 0.02 0.89 7.44 -2.39 -0.02 0.87 16 39 H 0.37 22.12 7.07 -92.71 -0.65 21.47 16 40 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.09 2.42 5.80 -2.39 -0.01 2.40 16 43 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.08 2.23 7.66 -2.39 -0.02 2.21 16 46 H 0.10 2.09 4.29 -2.39 -0.01 2.08 16 47 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.04 0.95 7.22 -2.39 -0.02 0.93 16 50 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.06 2.20 5.40 -2.38 -0.01 2.19 16 54 H 0.09 2.13 8.11 -2.39 -0.02 2.11 16 55 H 0.04 1.30 8.13 -2.38 -0.02 1.28 16 Total: -1.00 -72.80 400.17 3.99 -68.81 By element: Atomic # 1 Polarization: 46.94 SS G_CDS: 0.22 Total: 47.16 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.94 Total: -2.79 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -3.43 Total: -125.09 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.77 Total: -37.33 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -72.80 3.99 -68.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485814847.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.864 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds