Wall clock time and date at job start Tue Mar 31 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36941 * 120.00081 * 2 1 4 4 H 1.07995 * 119.99784 * 200.40827 * 3 2 1 5 5 C 1.38814 * 119.99689 * 20.40052 * 3 2 1 6 6 N 1.31610 * 120.00001 * 21.72266 * 5 3 2 7 7 Si 1.86798 * 119.99671 * 201.72062 * 5 3 2 8 8 H 1.48496 * 109.47253 * 94.99178 * 7 5 3 9 9 H 1.48500 * 109.47048 * 214.99056 * 7 5 3 10 10 H 1.48498 * 109.47079 * 334.98815 * 7 5 3 11 11 C 1.46500 * 120.00156 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46875 * 270.00236 * 11 2 1 13 13 O 1.42901 * 109.47561 * 64.99964 * 12 11 2 14 14 C 1.42898 * 114.00220 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47158 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47437 * 64.99672 * 15 14 13 17 17 C 1.46493 * 120.00143 * 270.00523 * 16 15 14 18 18 C 1.34778 * 119.99439 * 89.99994 * 16 15 14 19 19 O 1.21279 * 120.00286 * 354.75741 * 18 16 15 20 20 C 1.50703 * 119.99519 * 174.75881 * 18 16 15 21 21 H 1.09001 * 109.26473 * 22.71588 * 20 18 16 22 22 C 1.51384 * 109.26612 * 142.22207 * 20 18 16 23 23 C 1.49510 * 117.51862 * 194.07731 * 22 20 18 24 24 C 1.50523 * 113.04016 * 280.27410 * 23 22 20 25 25 C 1.31662 * 116.92083 * 84.57108 * 24 23 22 26 26 C 1.50806 * 118.09034 * 359.72611 * 25 24 23 27 27 C 1.52714 * 108.95753 * 255.14610 * 26 25 24 28 28 C 1.53861 * 109.26466 * 263.25880 * 20 18 16 29 29 H 1.08995 * 109.47483 * 275.18310 * 1 2 3 30 30 H 1.09005 * 109.46661 * 35.18833 * 1 2 3 31 31 H 1.08998 * 109.47006 * 155.18455 * 1 2 3 32 32 H 0.97002 * 119.99938 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47653 * 150.00117 * 11 2 1 34 34 H 1.09004 * 109.46998 * 29.99656 * 11 2 1 35 35 H 1.09000 * 109.47358 * 304.99307 * 12 11 2 36 36 H 1.09008 * 109.46851 * 184.99882 * 12 11 2 37 37 H 1.08998 * 109.47219 * 300.00090 * 14 13 12 38 38 H 1.08998 * 109.46818 * 59.99826 * 14 13 12 39 39 H 1.08995 * 109.47480 * 185.00257 * 15 14 13 40 40 H 1.09010 * 109.47119 * 304.99758 * 15 14 13 41 41 H 1.08998 * 109.47613 * 96.21459 * 17 16 15 42 42 H 1.08999 * 109.47196 * 216.21389 * 17 16 15 43 43 H 1.09007 * 109.47389 * 336.21112 * 17 16 15 44 44 H 1.08997 * 107.83389 * 316.10460 * 22 20 18 45 45 H 1.08997 * 107.83937 * 72.03729 * 22 20 18 46 46 H 1.08998 * 108.77367 * 41.19061 * 23 22 20 47 47 H 1.09000 * 108.77128 * 159.48044 * 23 22 20 48 48 H 1.07993 * 121.53949 * 264.55002 * 24 23 22 49 49 H 1.08004 * 120.95908 * 179.70571 * 25 24 23 50 50 H 1.09010 * 109.55403 * 14.97940 * 26 25 24 51 51 H 1.09002 * 109.56046 * 135.29610 * 26 25 24 52 52 H 1.09004 * 109.62312 * 177.53948 * 27 26 25 53 53 H 1.09004 * 109.61861 * 297.90027 * 27 26 25 54 54 H 1.09001 * 109.79848 * 253.42165 * 28 20 18 55 55 H 1.08999 * 109.79995 * 14.28800 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2152 -0.3261 5 6 1.5209 2.3504 0.4191 6 7 0.4620 2.2828 1.1976 7 14 2.1778 4.0132 -0.1221 8 1 1.4394 4.4689 -1.3271 9 1 1.9935 4.9986 0.9735 10 1 3.6229 3.8940 -0.4427 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 8 1.2060 -1.9944 2.0805 14 6 1.3324 -2.4190 3.4391 15 6 -0.0566 -2.6923 4.0194 16 7 -0.6663 -3.8230 3.3151 17 6 -1.4805 -3.5886 2.1200 18 6 -0.4780 -5.0788 3.7667 19 8 0.2720 -5.2824 4.6978 20 6 -1.1994 -6.2301 3.1145 21 1 -1.4845 -5.9480 2.1010 22 6 -0.2778 -7.4298 3.0588 23 6 -0.6756 -8.5658 2.1718 24 6 -1.7157 -9.4605 2.7911 25 6 -2.9729 -9.0916 2.6615 26 6 -3.2646 -7.8132 1.9166 27 6 -3.6362 -6.7263 2.9230 28 6 -2.4657 -6.5597 3.9240 29 1 -0.3634 0.0928 1.0234 30 1 -0.3633 0.8399 -0.5923 31 1 -0.3633 -0.9328 -0.4313 32 1 0.0228 3.0965 1.4908 33 1 3.1499 -1.1382 -0.5143 34 1 1.6084 -2.0282 -0.5147 35 1 2.9643 -0.9140 1.9811 36 1 3.0733 -2.6070 1.4426 37 1 1.9298 -3.3298 3.4811 38 1 1.8211 -1.6369 4.0201 39 1 0.0327 -2.9299 5.0794 40 1 -0.6821 -1.8079 3.8968 41 1 -0.8668 -3.7252 1.2296 42 1 -2.3102 -4.2953 2.1013 43 1 -1.8706 -2.5709 2.1399 44 1 0.7035 -7.0822 2.7361 45 1 -0.1734 -7.8180 4.0719 46 1 -1.0708 -8.1615 1.2399 47 1 0.2089 -9.1621 1.9476 48 1 -1.4433 -10.3634 3.3171 49 1 -3.7724 -9.6875 3.0763 50 1 -2.3801 -7.5063 1.3582 51 1 -4.0950 -7.9729 1.2288 52 1 -3.8070 -5.7856 2.3995 53 1 -4.5404 -7.0167 3.4581 54 1 -2.3187 -7.4868 4.4782 55 1 -2.6840 -5.7459 4.6156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489214604.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:53 Heat of formation + Delta-G solvation = -58.630184 kcal Electronic energy + Delta-G solvation = -31203.392194 eV Core-core repulsion = 27241.032112 eV Total energy + Delta-G solvation = -3962.360081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.54548 -39.46983 -38.82391 -37.22706 -36.37966 -34.34256 -33.84726 -33.43102 -31.37838 -29.67185 -28.18640 -27.76968 -27.30009 -26.75709 -24.86950 -24.34131 -22.67358 -22.14589 -21.88468 -20.04044 -18.88406 -18.75680 -18.29285 -17.61406 -17.20755 -16.95481 -16.70025 -16.45831 -16.12718 -15.95344 -15.41706 -15.32200 -15.22466 -14.78530 -14.63265 -14.48033 -14.13181 -13.94244 -13.82607 -13.59313 -13.47336 -13.28031 -13.04728 -12.95904 -12.86952 -12.68589 -12.62940 -12.44794 -12.34730 -12.25215 -12.08027 -11.98267 -11.96367 -11.76541 -11.72603 -11.68993 -11.32118 -10.85160 -10.68491 -10.56999 -10.39119 -9.73209 -9.67002 -8.74824 -7.79157 -5.21122 1.41560 1.47038 1.49175 1.57261 1.59109 2.01072 2.54285 2.88992 3.31911 3.48521 3.61845 3.75940 3.81174 4.05157 4.10188 4.12871 4.14862 4.22153 4.31202 4.33124 4.39836 4.45172 4.50717 4.53293 4.58412 4.59054 4.63725 4.67308 4.70372 4.77010 4.81137 4.88604 4.94529 4.96281 4.98474 5.03662 5.04884 5.13448 5.16403 5.17451 5.24603 5.32814 5.36263 5.41571 5.46857 5.51752 5.69687 5.82572 5.88965 6.09395 6.34549 6.37396 6.47013 7.14328 7.19448 7.93912 8.38405 9.23776 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.002355 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.226040 B =11886.916744 C =12018.387789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.609 5.609 3 C -0.264 4.264 4 H 0.069 0.931 5 C -0.051 4.051 6 N -0.926 5.926 7 Si 0.959 3.041 8 H -0.288 1.288 9 H -0.299 1.299 10 H -0.269 1.269 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.377 6.377 14 C 0.053 3.947 15 C 0.125 3.875 16 N -0.604 5.604 17 C 0.083 3.917 18 C 0.513 3.487 19 O -0.587 6.587 20 C -0.094 4.094 21 H 0.110 0.890 22 C -0.091 4.091 23 C -0.090 4.090 24 C -0.172 4.172 25 C -0.153 4.153 26 C -0.112 4.112 27 C -0.108 4.108 28 C -0.101 4.101 29 H 0.006 0.994 30 H 0.004 0.996 31 H 0.030 0.970 32 H 0.245 0.755 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.018 0.982 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.077 0.923 53 H 0.074 0.926 54 H 0.072 0.928 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 -23.265 1.937 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.332 5.332 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.247 4.247 6 N -0.572 5.572 7 Si 0.788 3.212 8 H -0.215 1.215 9 H -0.226 1.226 10 H -0.194 1.194 11 C 0.024 3.976 12 C -0.027 4.027 13 O -0.296 6.296 14 C -0.025 4.025 15 C 0.002 3.998 16 N -0.335 5.335 17 C -0.059 4.059 18 C 0.303 3.697 19 O -0.468 6.468 20 C -0.115 4.115 21 H 0.128 0.872 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.189 4.189 25 C -0.171 4.171 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.139 4.139 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.095 0.905 53 H 0.093 0.907 54 H 0.090 0.910 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.776 -23.202 2.351 24.918 hybrid contribution 0.908 1.370 0.483 1.713 sum -7.868 -21.832 2.834 23.379 Atomic orbital electron populations 1.20379 0.82501 0.95223 0.97488 1.44152 1.02335 1.01299 1.85407 1.19503 0.97434 0.86153 1.36384 0.91283 1.25607 0.99386 1.01175 0.98503 1.70293 1.24601 1.26981 1.35362 0.85376 0.78308 0.80460 0.77078 1.21527 1.22569 1.19404 1.21063 0.96829 0.87353 0.92328 1.23232 0.85702 0.96967 0.96844 1.87904 1.30106 1.87296 1.24323 1.22773 0.98092 0.97303 0.84362 1.21435 0.92780 0.89262 0.96323 1.47880 1.50767 1.05645 1.29215 1.21954 0.94757 1.03267 0.85903 1.21324 0.80947 0.84458 0.83010 1.90645 1.39411 1.84977 1.31722 1.21271 0.96372 0.92336 1.01556 0.87199 1.20231 0.97659 0.93995 1.01038 1.19998 0.98875 0.94957 0.98818 1.23077 0.94715 0.99785 1.01370 1.23210 0.96927 0.97454 0.99502 1.21094 1.03004 0.93061 0.97722 1.21862 0.97055 0.99081 0.96561 1.22065 0.92636 1.01606 0.97576 0.97531 0.97745 0.95118 0.94535 0.91320 0.91795 0.96378 0.93203 0.94373 0.93846 0.89034 0.89455 0.92458 0.88678 0.90953 0.93708 0.93009 0.89786 0.91023 0.86470 0.86405 0.90030 0.90245 0.90453 0.90689 0.90951 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.27 8.67 127.77 1.11 10.38 16 2 N -0.61 -30.36 2.89 -726.94 -2.10 -32.46 16 3 C -0.26 -14.50 9.62 84.03 0.81 -13.70 16 4 H 0.07 3.68 7.90 -2.91 -0.02 3.66 16 5 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 6 N -0.93 -54.95 11.09 21.65 0.24 -54.71 16 7 Si 0.96 45.27 29.61 68.60 2.03 47.30 16 8 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 C 0.15 6.00 6.11 86.38 0.53 6.53 16 12 C 0.05 1.99 6.28 71.98 0.45 2.44 16 13 O -0.38 -14.50 9.46 -148.98 -1.41 -15.91 16 14 C 0.05 1.80 6.28 71.98 0.45 2.25 16 15 C 0.13 3.73 5.81 86.38 0.50 4.23 16 16 N -0.60 -15.93 2.84 -846.76 -2.40 -18.33 16 17 C 0.08 1.78 9.44 127.77 1.21 2.99 16 18 C 0.51 13.88 6.22 87.66 0.54 14.42 16 19 O -0.59 -20.36 16.12 -3.02 -0.05 -20.41 16 20 C -0.09 -1.80 1.39 -11.78 -0.02 -1.82 16 21 H 0.11 1.72 4.55 -2.39 -0.01 1.71 16 22 C -0.09 -1.77 3.84 28.95 0.11 -1.66 16 23 C -0.09 -1.29 5.13 28.68 0.15 -1.14 16 24 C -0.17 -2.26 9.28 24.97 0.23 -2.03 16 25 C -0.15 -1.80 8.55 25.06 0.21 -1.58 16 26 C -0.11 -1.19 5.42 29.79 0.16 -1.03 16 27 C -0.11 -1.22 5.60 31.16 0.17 -1.05 16 28 C -0.10 -1.65 5.30 31.54 0.17 -1.49 16 29 H 0.01 0.35 7.40 -2.39 -0.02 0.33 16 30 H 0.00 0.20 7.40 -2.38 -0.02 0.19 16 31 H 0.03 1.27 7.83 -2.39 -0.02 1.25 16 32 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.07 2.57 8.03 -2.39 -0.02 2.55 16 34 H 0.06 2.28 7.86 -2.39 -0.02 2.26 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 2.68 7.50 -2.39 -0.02 2.66 16 40 H 0.09 2.62 7.85 -2.38 -0.02 2.61 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.39 5.51 -2.39 -0.01 1.38 16 43 H 0.07 1.68 7.82 -2.38 -0.02 1.66 16 44 H 0.04 1.01 7.94 -2.39 -0.02 0.99 16 45 H 0.05 1.16 7.70 -2.39 -0.02 1.14 16 46 H 0.08 1.07 5.63 -2.39 -0.01 1.06 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.12 1.40 8.06 -2.91 -0.02 1.37 16 49 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 50 H 0.08 0.91 3.56 -2.38 -0.01 0.90 16 51 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.08 0.76 7.14 -2.39 -0.02 0.74 16 53 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.07 1.27 6.28 -2.39 -0.01 1.25 16 55 H 0.05 1.00 7.67 -2.39 -0.02 0.99 16 Total: -1.00 -69.22 416.30 4.37 -64.85 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.84 Total: 14.37 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 7.21 Total: 15.30 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -4.26 Total: -105.50 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.46 Total: -36.33 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.22 4.37 -64.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489214604.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.224 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds