Wall clock time and date at job start Tue Mar 31 2020 22:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99846 * 2 1 4 4 H 1.08005 * 119.99757 * 202.68259 * 3 2 1 5 5 C 1.38811 * 120.00286 * 22.67658 * 3 2 1 6 6 N 1.31617 * 119.99998 * 11.49802 * 5 3 2 7 7 Si 1.86797 * 120.00088 * 191.49261 * 5 3 2 8 8 H 1.48501 * 109.46903 * 60.00248 * 7 5 3 9 9 H 1.48503 * 109.47067 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47373 * 300.00102 * 7 5 3 11 11 C 1.46494 * 119.99734 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47009 * 269.99881 * 11 2 1 13 13 O 1.42894 * 109.47123 * 65.00254 * 12 11 2 14 14 C 1.42899 * 114.00179 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47717 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47047 * 64.99421 * 15 14 13 17 17 C 1.46497 * 120.00380 * 270.00552 * 16 15 14 18 18 C 1.34775 * 119.99896 * 90.00486 * 16 15 14 19 19 O 1.21288 * 119.99744 * 359.97438 * 18 16 15 20 20 C 1.50694 * 120.00282 * 180.02562 * 18 16 15 21 21 H 1.09002 * 109.84932 * 60.84860 * 20 18 16 22 22 C 1.54929 * 109.80355 * 299.99959 * 20 18 16 23 23 C 1.52719 * 108.57304 * 183.43714 * 22 20 18 24 24 C 1.50804 * 108.95210 * 302.18637 * 23 22 20 25 25 C 1.31657 * 118.08656 * 104.86307 * 24 23 22 26 26 C 1.50517 * 116.92889 * 0.26520 * 25 24 23 27 27 C 1.49512 * 113.04145 * 275.43861 * 26 25 24 28 28 C 1.51386 * 117.51886 * 79.71806 * 27 26 25 29 29 H 1.09002 * 109.47307 * 273.93344 * 1 2 3 30 30 H 1.09003 * 109.46915 * 33.93253 * 1 2 3 31 31 H 1.09000 * 109.47132 * 153.93056 * 1 2 3 32 32 H 0.97002 * 119.99948 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.46990 * 150.00218 * 11 2 1 34 34 H 1.08999 * 109.47813 * 29.99932 * 11 2 1 35 35 H 1.08998 * 109.46935 * 305.00003 * 12 11 2 36 36 H 1.08998 * 109.47332 * 185.00596 * 12 11 2 37 37 H 1.09001 * 109.47496 * 59.99519 * 14 13 12 38 38 H 1.08998 * 109.46831 * 300.00225 * 14 13 12 39 39 H 1.08998 * 109.46672 * 304.99950 * 15 14 13 40 40 H 1.08993 * 109.47772 * 184.99851 * 15 14 13 41 41 H 1.09002 * 109.47443 * 269.99956 * 17 16 15 42 42 H 1.09000 * 109.46819 * 29.99814 * 17 16 15 43 43 H 1.09001 * 109.47444 * 149.99751 * 17 16 15 44 44 H 1.09004 * 109.62056 * 63.70914 * 22 20 18 45 45 H 1.09005 * 109.77210 * 303.25039 * 22 20 18 46 46 H 1.08996 * 109.55666 * 182.33979 * 23 22 20 47 47 H 1.09004 * 109.64095 * 62.07760 * 23 22 20 48 48 H 1.08001 * 120.95332 * 284.83426 * 24 23 22 49 49 H 1.08002 * 121.53701 * 179.97438 * 25 24 23 50 50 H 1.08999 * 108.76543 * 36.35447 * 26 25 24 51 51 H 1.09002 * 108.76803 * 154.51768 * 26 25 24 52 52 H 1.08994 * 107.83673 * 317.67562 * 27 26 25 53 53 H 1.09005 * 107.79970 * 201.72121 * 27 26 25 54 54 H 1.08998 * 109.27138 * 165.91929 * 28 27 26 55 55 H 1.09004 * 109.24014 * 46.43325 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1671 1.2221 -0.3607 5 6 1.5361 2.3416 0.4634 6 7 0.3912 2.2656 1.1081 7 14 2.3355 4.0046 0.1723 8 1 2.4797 4.2356 -1.2875 9 1 1.4871 5.0715 0.7614 10 1 3.6755 4.0286 0.8120 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 8 1.2060 -1.9944 2.0805 14 6 1.3323 -2.4179 3.4395 15 6 -0.0567 -2.6912 4.0198 16 7 -0.6658 -3.8227 3.3163 17 6 -1.4800 -3.5896 2.1209 18 6 -0.4772 -5.0781 3.7687 19 8 0.1972 -5.2711 4.7582 20 6 -1.1033 -6.2421 3.0448 21 1 -0.7267 -6.2882 2.0229 22 6 -2.6443 -6.0833 3.0296 23 6 -3.2539 -7.3168 2.3669 24 6 -2.6874 -7.4560 0.9763 25 6 -1.7822 -8.3887 0.7662 26 6 -1.3971 -9.2425 1.9445 27 6 -0.3401 -8.6189 2.7985 28 6 -0.7739 -7.5522 3.7812 29 1 -0.3634 0.0705 1.0252 30 1 -0.3633 0.8527 -0.5737 31 1 -0.3633 -0.9231 -0.4516 32 1 -0.0374 3.0732 1.4323 33 1 3.1499 -1.1382 -0.5143 34 1 1.6084 -2.0282 -0.5147 35 1 2.9642 -0.9140 1.9811 36 1 3.0732 -2.6070 1.4428 37 1 1.8206 -1.6352 4.0201 38 1 1.9300 -3.3284 3.4822 39 1 -0.6823 -1.8073 3.8964 40 1 0.0325 -2.9280 5.0800 41 1 -2.5205 -3.4459 2.4122 42 1 -1.1209 -2.6992 1.6047 43 1 -1.4044 -4.4502 1.4562 44 1 -2.9149 -5.1921 2.4633 45 1 -3.0160 -5.9950 4.0505 46 1 -4.3365 -7.2031 2.3102 47 1 -3.0103 -8.2045 2.9507 48 1 -3.0152 -6.8095 0.1756 49 1 -1.3398 -8.5374 -0.2077 50 1 -2.2829 -9.4178 2.5549 51 1 -1.0312 -10.2016 1.5779 52 1 0.4072 -8.1798 2.1375 53 1 0.1452 -9.4153 3.3628 54 1 0.0304 -7.3715 4.4943 55 1 -1.6589 -7.8959 4.3168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489214605.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:58 Heat of formation + Delta-G solvation = -54.992665 kcal Electronic energy + Delta-G solvation = -31340.019040 eV Core-core repulsion = 27377.816694 eV Total energy + Delta-G solvation = -3962.202347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50626 -39.45989 -38.83819 -37.23883 -36.43810 -34.34546 -33.77364 -33.40443 -31.34478 -29.66380 -28.30563 -27.78699 -27.27942 -26.72862 -24.82780 -24.10441 -22.68023 -22.17195 -21.93268 -20.01661 -18.84937 -18.77166 -18.24717 -17.59754 -17.26563 -16.97598 -16.78085 -16.37000 -16.30893 -15.78360 -15.40834 -15.34061 -15.19221 -14.74421 -14.60420 -14.55667 -14.04040 -13.98090 -13.79044 -13.56779 -13.36166 -13.22219 -13.01958 -12.98229 -12.82579 -12.65278 -12.61523 -12.48929 -12.33435 -12.16374 -12.07151 -12.00831 -11.78464 -11.72083 -11.70187 -11.68519 -11.30132 -10.82030 -10.71039 -10.58990 -10.39004 -9.72150 -9.63916 -8.71073 -7.76820 -5.24102 1.43162 1.47388 1.49182 1.55577 1.61710 2.04167 2.53552 2.88625 3.35910 3.54616 3.70822 3.77216 3.80157 4.06415 4.09759 4.12740 4.17927 4.22367 4.30586 4.36557 4.45742 4.49397 4.51597 4.55020 4.57199 4.60847 4.63982 4.67997 4.70189 4.76934 4.83358 4.91546 4.94339 4.96326 4.99519 5.06586 5.09456 5.13271 5.16713 5.23545 5.27162 5.38109 5.42379 5.43918 5.50242 5.56091 5.68189 5.87920 5.91851 6.10498 6.35584 6.38912 6.48668 7.16415 7.21612 7.94374 8.39045 9.25836 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002491 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.239490 B =11239.787545 C =11542.843411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.612 5.612 3 C -0.264 4.264 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.932 5.932 7 Si 0.965 3.035 8 H -0.278 1.278 9 H -0.296 1.296 10 H -0.279 1.279 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.378 6.378 14 C 0.053 3.947 15 C 0.124 3.876 16 N -0.602 5.602 17 C 0.080 3.920 18 C 0.511 3.489 19 O -0.585 6.585 20 C -0.098 4.098 21 H 0.104 0.896 22 C -0.109 4.109 23 C -0.102 4.102 24 C -0.160 4.160 25 C -0.169 4.169 26 C -0.094 4.094 27 C -0.108 4.108 28 C -0.106 4.106 29 H 0.005 0.995 30 H 0.009 0.991 31 H 0.022 0.978 32 H 0.245 0.755 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.047 0.953 53 H 0.065 0.935 54 H 0.061 0.939 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -23.270 1.976 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.335 5.335 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.247 4.247 6 N -0.579 5.579 7 Si 0.794 3.206 8 H -0.205 1.205 9 H -0.222 1.222 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.298 6.298 14 C -0.025 4.025 15 C 0.001 3.999 16 N -0.333 5.333 17 C -0.062 4.062 18 C 0.301 3.699 19 O -0.466 6.466 20 C -0.119 4.119 21 H 0.122 0.878 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.178 4.178 25 C -0.187 4.187 26 C -0.131 4.131 27 C -0.146 4.146 28 C -0.144 4.144 29 H 0.023 0.977 30 H 0.027 0.973 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.098 0.902 51 H 0.090 0.910 52 H 0.066 0.934 53 H 0.084 0.916 54 H 0.080 0.920 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.555 -23.214 2.434 24.534 hybrid contribution 0.936 1.492 0.234 1.777 sum -6.619 -21.722 2.668 22.865 Atomic orbital electron populations 1.20361 0.82406 0.94874 0.97314 1.44088 1.02377 1.01235 1.85802 1.19506 0.98352 0.86799 1.34803 0.91267 1.25747 0.98568 1.01593 0.98829 1.70246 1.19383 1.27187 1.41090 0.85383 0.77561 0.79907 0.77789 1.20455 1.22218 1.20466 1.21051 0.96753 0.87341 0.92383 1.23232 0.85682 0.97012 0.96801 1.87903 1.30161 1.87345 1.24352 1.22792 0.98031 0.97393 0.84314 1.21408 0.92667 0.89299 0.96509 1.47819 1.50676 1.05663 1.29116 1.22088 0.94665 1.03316 0.86132 1.21311 0.79746 0.84718 0.84145 1.90618 1.42251 1.85129 1.28623 1.21933 0.97730 0.92027 1.00215 0.87817 1.22062 0.90983 0.99959 1.01612 1.21000 1.00348 0.98569 0.93980 1.23206 0.98259 0.98573 0.97784 1.23163 0.98647 0.97912 0.98967 1.20069 0.99458 0.98393 0.95187 1.20437 0.98725 0.98076 0.97335 1.21426 1.02451 0.92569 0.97907 0.97667 0.97269 0.95928 0.94556 0.91353 0.92014 0.96261 0.93143 0.93710 0.94301 0.89646 0.88832 0.90669 0.91581 0.89537 0.89716 0.91541 0.90134 0.89536 0.86524 0.86538 0.90154 0.90971 0.93442 0.91582 0.91993 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 9.72 8.61 127.77 1.10 10.82 16 2 N -0.61 -30.74 2.89 -726.92 -2.10 -32.84 16 3 C -0.26 -14.52 9.67 84.03 0.81 -13.71 16 4 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 5 C -0.05 -2.93 5.12 84.86 0.43 -2.50 16 6 N -0.93 -55.30 10.61 21.65 0.23 -55.07 16 7 Si 0.96 45.32 29.57 68.60 2.03 47.35 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 C 0.15 6.06 6.11 86.38 0.53 6.59 16 12 C 0.05 1.99 6.28 71.98 0.45 2.44 16 13 O -0.38 -14.56 8.72 -148.98 -1.30 -15.86 16 14 C 0.05 1.78 6.28 71.98 0.45 2.23 16 15 C 0.12 3.71 5.81 86.38 0.50 4.21 16 16 N -0.60 -16.01 2.84 -846.78 -2.40 -18.41 16 17 C 0.08 1.78 8.62 127.77 1.10 2.88 16 18 C 0.51 13.85 7.11 87.66 0.62 14.47 16 19 O -0.59 -19.93 14.80 -3.05 -0.05 -19.98 16 20 C -0.10 -1.91 1.37 -10.59 -0.01 -1.92 16 21 H 0.10 2.01 5.60 -2.39 -0.01 2.00 16 22 C -0.11 -1.62 4.49 31.16 0.14 -1.48 16 23 C -0.10 -1.21 5.41 29.79 0.16 -1.05 16 24 C -0.16 -2.02 8.55 25.07 0.21 -1.81 16 25 C -0.17 -2.18 9.28 24.98 0.23 -1.95 16 26 C -0.09 -1.15 5.13 28.67 0.15 -1.00 16 27 C -0.11 -1.64 4.90 28.95 0.14 -1.50 16 28 C -0.11 -1.97 4.97 30.36 0.15 -1.82 16 29 H 0.01 0.28 7.43 -2.39 -0.02 0.26 16 30 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 31 H 0.02 0.96 7.85 -2.39 -0.02 0.94 16 32 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.07 2.57 8.03 -2.39 -0.02 2.55 16 34 H 0.06 2.24 7.87 -2.39 -0.02 2.22 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 2.60 8.07 -2.39 -0.02 2.58 16 40 H 0.09 2.73 7.42 -2.39 -0.02 2.72 16 41 H 0.07 1.36 7.03 -2.39 -0.02 1.34 16 42 H 0.07 1.85 7.11 -2.39 -0.02 1.83 16 43 H 0.09 1.60 6.00 -2.39 -0.01 1.58 16 44 H 0.08 1.18 4.73 -2.39 -0.01 1.17 16 45 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.09 0.99 3.57 -2.38 -0.01 0.99 16 48 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16 49 H 0.12 1.40 8.06 -2.91 -0.02 1.38 16 50 H 0.08 0.88 5.62 -2.39 -0.01 0.87 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.05 0.82 7.71 -2.39 -0.02 0.80 16 53 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 54 H 0.06 1.51 6.45 -2.39 -0.02 1.49 16 55 H 0.08 1.23 6.57 -2.38 -0.02 1.22 16 Total: -1.00 -68.08 410.14 4.44 -63.63 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.85 Total: 16.27 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 7.18 Total: 14.91 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.27 Total: -106.32 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.34 Total: -35.84 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.08 4.44 -63.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489214605.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.641 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds