Wall clock time and date at job start Tue Mar 31 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99908 * 2 1 4 4 H 1.08002 * 120.00089 * 202.91068 * 3 2 1 5 5 C 1.38812 * 119.99728 * 22.91525 * 3 2 1 6 6 N 1.31619 * 120.00419 * 13.13386 * 5 3 2 7 7 Si 1.86806 * 119.99834 * 193.13646 * 5 3 2 8 8 H 1.48497 * 109.47037 * 59.99832 * 7 5 3 9 9 H 1.48494 * 109.47266 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46920 * 299.99945 * 7 5 3 11 11 C 1.46495 * 119.99888 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47246 * 90.00312 * 11 2 1 13 13 O 1.42899 * 109.47524 * 64.99376 * 12 11 2 14 14 C 1.42900 * 114.00406 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47104 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.47565 * 64.99646 * 15 14 13 17 17 C 1.46493 * 120.00097 * 270.00328 * 16 15 14 18 18 C 1.34773 * 119.99633 * 89.99695 * 16 15 14 19 19 O 1.21277 * 120.00588 * 0.02562 * 18 16 15 20 20 C 1.50701 * 119.99755 * 179.97438 * 18 16 15 21 21 H 1.09000 * 115.56131 * 325.69376 * 20 18 16 22 22 C 1.53005 * 117.49869 * 111.38015 * 20 18 16 23 23 C 1.52997 * 117.49816 * 180.02562 * 20 18 16 24 24 H 1.08993 * 117.50144 * 0.02562 * 23 20 18 25 25 C 1.53011 * 117.49748 * 145.02318 * 23 20 18 26 26 C 1.54265 * 110.02903 * 297.90845 * 25 23 20 27 27 C 1.54965 * 104.15675 * 217.13343 * 26 25 23 28 28 C 1.54888 * 102.77853 * 37.89404 * 27 26 25 29 29 C 1.53868 * 110.03061 * 180.69048 * 25 23 20 30 30 H 1.09005 * 109.47186 * 275.12563 * 1 2 3 31 31 H 1.08998 * 109.47480 * 35.12553 * 1 2 3 32 32 H 1.09001 * 109.47275 * 155.12450 * 1 2 3 33 33 H 0.96998 * 119.99960 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.47703 * 329.99737 * 11 2 1 35 35 H 1.09002 * 109.47390 * 209.99838 * 11 2 1 36 36 H 1.09004 * 109.46697 * 304.99884 * 12 11 2 37 37 H 1.08996 * 109.47279 * 185.00020 * 12 11 2 38 38 H 1.08997 * 109.47376 * 59.99825 * 14 13 12 39 39 H 1.09004 * 109.46740 * 299.99735 * 14 13 12 40 40 H 1.09001 * 109.47115 * 304.99741 * 15 14 13 41 41 H 1.09004 * 109.47150 * 184.99746 * 15 14 13 42 42 H 1.09001 * 109.47043 * 270.00001 * 17 16 15 43 43 H 1.09001 * 109.47162 * 29.99368 * 17 16 15 44 44 H 1.08997 * 109.47780 * 149.99831 * 17 16 15 45 45 H 1.08999 * 117.49541 * 359.97438 * 22 20 18 46 46 H 1.09000 * 117.49994 * 214.98172 * 22 20 18 47 47 H 1.09005 * 110.01526 * 59.30210 * 25 23 20 48 48 H 1.08997 * 110.49312 * 335.78505 * 26 25 23 49 49 H 1.09004 * 110.48378 * 98.42800 * 26 25 23 50 50 H 1.08999 * 110.72582 * 279.57500 * 27 26 25 51 51 H 1.09006 * 110.75975 * 156.22442 * 27 26 25 52 52 H 1.08995 * 110.48742 * 203.40295 * 28 27 26 53 53 H 1.08991 * 110.48775 * 80.75571 * 28 27 26 54 54 H 1.09000 * 110.03371 * 238.56753 * 29 25 23 55 55 H 1.08998 * 110.03654 * 359.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1658 1.2228 -0.3641 5 6 1.5377 2.3406 0.4681 6 7 0.4115 2.2607 1.1447 7 14 2.3125 4.0080 0.1377 8 1 2.4144 4.2247 -1.3278 9 1 1.4695 5.0731 0.7377 10 1 3.6691 4.0515 0.7400 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 8 3.3209 -0.7715 -2.0817 14 6 3.6240 -1.0917 -3.4410 15 6 4.5560 -0.0257 -4.0205 16 7 5.8406 -0.0654 -3.3172 17 6 6.0465 0.7551 -2.1212 18 6 6.8327 -0.8569 -3.7705 19 8 6.6624 -1.5359 -4.7609 20 6 8.1543 -0.8973 -3.0475 21 1 8.4736 0.0431 -2.5983 22 6 8.5196 -2.1901 -2.3150 23 6 9.2406 -1.8151 -3.6119 24 1 8.9995 -2.3893 -4.5064 25 6 10.6918 -1.3427 -3.5021 26 6 10.8825 -0.0331 -4.2947 27 6 12.2966 -0.1674 -4.9141 28 6 12.3643 -1.6682 -5.2911 29 6 11.6336 -2.3819 -4.1349 30 1 -0.3634 0.0918 1.0236 31 1 -0.3634 0.8405 -0.5913 32 1 -0.3634 -0.9323 -0.4323 33 1 -0.0162 3.0676 1.4714 34 1 1.6085 -2.0286 0.5129 35 1 3.1499 -1.1387 0.5133 36 1 1.5061 -1.7540 -1.9823 37 1 2.9181 -2.6952 -1.4450 38 1 2.7019 -1.1230 -4.0213 39 1 4.1138 -2.0645 -3.4845 40 1 4.1041 0.9584 -3.8962 41 1 4.7162 -0.2207 -5.0809 42 1 6.4429 1.7280 -2.4119 43 1 5.0961 0.8896 -1.6048 44 1 6.7537 0.2583 -1.4570 45 1 7.8038 -3.0110 -2.3558 46 1 9.0792 -2.1001 -1.3839 47 1 10.9556 -1.1879 -2.4558 48 1 10.1295 0.0519 -5.0781 49 1 10.8380 0.8271 -3.6266 50 1 13.0640 0.0818 -4.1812 51 1 12.3908 0.4584 -5.8016 52 1 13.4008 -2.0003 -5.3501 53 1 11.8508 -1.8478 -6.2355 54 1 12.3552 -2.7308 -3.3961 55 1 11.0571 -3.2230 -4.5198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489217617.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:10 Heat of formation + Delta-G solvation = -61.839400 kcal Electronic energy + Delta-G solvation = -30490.099017 eV Core-core repulsion = 26527.599774 eV Total energy + Delta-G solvation = -3962.499243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.34219 -39.58206 -38.90430 -37.28126 -36.60471 -36.30531 -33.44015 -31.54147 -29.80651 -29.52387 -29.38861 -27.84643 -27.44520 -25.59305 -24.82298 -23.24509 -22.82590 -22.06469 -21.42868 -20.48406 -19.90249 -18.65088 -18.31805 -17.59372 -17.27780 -17.05287 -16.68093 -16.52270 -16.09803 -16.07857 -15.45987 -15.28980 -15.02078 -14.76083 -14.68916 -14.18685 -14.14919 -13.83634 -13.64971 -13.45261 -13.42935 -13.17529 -13.01834 -12.82004 -12.70616 -12.60099 -12.53584 -12.48377 -12.22107 -12.15692 -12.02026 -11.92453 -11.86979 -11.80224 -11.71186 -11.47856 -11.36988 -11.13514 -10.91798 -10.74779 -10.52600 -10.37423 -9.67664 -8.67629 -7.71609 -5.18417 1.44957 1.49568 1.52901 1.58406 1.97584 2.58878 2.82781 2.91152 3.41378 3.42816 3.67940 3.74326 3.76691 3.83286 3.95472 4.07239 4.10557 4.15439 4.23312 4.32939 4.39895 4.49590 4.51993 4.52627 4.58857 4.61734 4.62829 4.64343 4.69123 4.75829 4.80945 4.82893 4.87919 4.88323 4.88634 4.89165 4.98890 5.05245 5.07994 5.10639 5.17415 5.25411 5.33955 5.38379 5.39702 5.49216 5.51330 5.57992 5.72817 5.83477 6.34581 6.43958 6.51614 7.12870 7.26162 7.97720 8.41769 9.32389 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.002441 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.421959 B =11467.160706 C =12316.494943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.614 5.614 3 C -0.226 4.226 4 H 0.075 0.925 5 C -0.066 4.066 6 N -0.948 5.948 7 Si 0.962 3.038 8 H -0.282 1.282 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.149 3.851 12 C 0.054 3.946 13 O -0.378 6.378 14 C 0.051 3.949 15 C 0.120 3.880 16 N -0.601 5.601 17 C 0.080 3.920 18 C 0.537 3.463 19 O -0.587 6.587 20 C -0.192 4.192 21 H 0.141 0.859 22 C -0.138 4.138 23 C -0.104 4.104 24 H 0.093 0.907 25 C -0.058 4.058 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.127 4.127 29 C -0.118 4.118 30 H 0.005 0.995 31 H 0.011 0.989 32 H 0.028 0.972 33 H 0.243 0.757 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.088 0.912 48 H 0.050 0.950 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.065 0.935 52 H 0.074 0.926 53 H 0.056 0.944 54 H 0.076 0.924 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.425 -8.342 -9.839 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.337 5.337 3 C -0.356 4.356 4 H 0.093 0.907 5 C -0.259 4.259 6 N -0.597 5.597 7 Si 0.791 3.209 8 H -0.208 1.208 9 H -0.229 1.229 10 H -0.196 1.196 11 C 0.023 3.977 12 C -0.025 4.025 13 O -0.297 6.297 14 C -0.027 4.027 15 C -0.003 4.003 16 N -0.332 5.332 17 C -0.063 4.063 18 C 0.327 3.673 19 O -0.468 6.468 20 C -0.213 4.213 21 H 0.159 0.841 22 C -0.175 4.175 23 C -0.123 4.123 24 H 0.111 0.889 25 C -0.076 4.076 26 C -0.158 4.158 27 C -0.162 4.162 28 C -0.164 4.164 29 C -0.156 4.156 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.147 0.853 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.092 0.908 53 H 0.075 0.925 54 H 0.094 0.906 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.288 -8.388 -10.165 25.893 hybrid contribution -0.759 0.837 -0.264 1.160 sum 21.530 -7.551 -10.429 25.086 Atomic orbital electron populations 1.20514 0.83156 0.95573 0.97530 1.44093 1.01804 1.01895 1.85908 1.19456 0.98170 0.86058 1.31958 0.90721 1.25756 0.98958 1.01676 0.99501 1.70231 1.21294 1.27100 1.41093 0.85407 0.77885 0.79990 0.77651 1.20796 1.22912 1.19598 1.20949 0.96114 0.87763 0.92918 1.23226 0.92137 0.91303 0.95879 1.88021 1.67310 1.50132 1.24286 1.22825 0.97838 0.97633 0.84448 1.21494 0.82464 0.99778 0.96528 1.47768 1.12737 1.43671 1.29013 1.21944 1.03500 0.94664 0.86165 1.20250 0.85422 0.78048 0.83540 1.90629 1.83230 1.44646 1.28342 1.22279 0.93358 0.98945 1.06709 0.84142 1.23158 1.02379 0.94758 0.97211 1.22482 0.92139 1.00150 0.97541 0.88880 1.21424 0.90559 0.94961 1.00664 1.22418 0.97113 0.97085 0.99153 1.22518 0.96695 0.96334 1.00613 1.22385 1.00590 0.95410 0.98059 1.22196 0.97898 0.97589 0.97875 0.97658 0.97048 0.95391 0.94807 0.91176 0.93270 0.94821 0.92820 0.92467 0.94432 0.89449 0.88732 0.91375 0.91342 0.89453 0.89683 0.85324 0.89397 0.93070 0.91027 0.90574 0.91635 0.90764 0.92545 0.90576 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.82 8.98 127.77 1.15 9.97 16 2 N -0.61 -30.53 2.90 -726.95 -2.11 -32.64 16 3 C -0.23 -12.20 9.21 84.03 0.77 -11.42 16 4 H 0.08 3.93 7.27 -2.91 -0.02 3.90 16 5 C -0.07 -3.69 5.10 84.86 0.43 -3.26 16 6 N -0.95 -56.84 10.71 21.65 0.23 -56.61 16 7 Si 0.96 45.06 29.57 68.60 2.03 47.09 16 8 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 9 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.15 5.88 6.07 86.38 0.52 6.40 16 12 C 0.05 1.85 6.28 71.98 0.45 2.30 16 13 O -0.38 -13.75 8.40 -148.98 -1.25 -15.00 16 14 C 0.05 1.55 6.28 71.98 0.45 2.00 16 15 C 0.12 3.45 5.81 86.38 0.50 3.95 16 16 N -0.60 -16.53 2.84 -846.77 -2.40 -18.93 16 17 C 0.08 1.96 9.82 127.77 1.26 3.22 16 18 C 0.54 15.03 7.46 87.66 0.65 15.68 16 19 O -0.59 -20.26 15.84 -3.02 -0.05 -20.31 16 20 C -0.19 -3.91 4.23 -11.54 -0.05 -3.96 16 21 H 0.14 2.32 7.26 -2.39 -0.02 2.30 16 22 C -0.14 -2.41 9.89 30.61 0.30 -2.11 16 23 C -0.10 -1.93 4.37 -10.77 -0.05 -1.98 16 24 H 0.09 2.18 7.44 -2.39 -0.02 2.17 16 25 C -0.06 -0.80 3.09 -10.07 -0.03 -0.83 16 26 C -0.12 -1.73 6.11 31.69 0.19 -1.54 16 27 C -0.12 -1.51 6.91 31.91 0.22 -1.29 16 28 C -0.13 -1.57 6.83 31.67 0.22 -1.36 16 29 C -0.12 -1.51 6.46 31.32 0.20 -1.31 16 30 H 0.01 0.28 7.34 -2.38 -0.02 0.26 16 31 H 0.01 0.59 7.34 -2.39 -0.02 0.57 16 32 H 0.03 1.17 8.03 -2.39 -0.02 1.15 16 33 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 35 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 36 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 41 H 0.09 2.63 7.42 -2.39 -0.02 2.61 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 2.12 6.81 -2.39 -0.02 2.10 16 44 H 0.09 1.80 6.64 -2.39 -0.02 1.79 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.13 1.61 8.07 -2.39 -0.02 1.59 16 47 H 0.09 1.01 7.94 -2.38 -0.02 0.99 16 48 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 50 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 55 H 0.06 0.86 7.53 -2.39 -0.02 0.84 16 Total: -1.00 -68.61 431.61 4.48 -64.13 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.82 Total: 17.79 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 7.20 Total: 14.47 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -4.28 Total: -108.18 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.30 Total: -35.31 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.61 4.48 -64.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489217617.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.295 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds