Wall clock time and date at job start Tue Mar 31 2020 22:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 120.00100 * 2 1 4 4 H 1.07998 * 119.99922 * 212.08973 * 3 2 1 5 5 C 1.38805 * 119.99986 * 32.08380 * 3 2 1 6 6 N 1.31619 * 120.00298 * 12.68631 * 5 3 2 7 7 Si 1.86805 * 120.00108 * 192.68647 * 5 3 2 8 8 H 1.48501 * 109.47092 * 94.98499 * 7 5 3 9 9 H 1.48498 * 109.47183 * 214.98514 * 7 5 3 10 10 H 1.48500 * 109.47004 * 334.98500 * 7 5 3 11 11 C 1.46500 * 119.99857 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.46988 * 269.99824 * 11 2 1 13 13 O 1.42901 * 109.47114 * 65.00232 * 12 11 2 14 14 C 1.42901 * 113.99870 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47243 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.47085 * 64.99448 * 15 14 13 17 17 C 1.46498 * 120.00211 * 270.00753 * 16 15 14 18 18 C 1.34779 * 119.99527 * 90.00134 * 16 15 14 19 19 O 1.21275 * 120.00503 * 0.02562 * 18 16 15 20 20 C 1.50702 * 119.99572 * 180.02562 * 18 16 15 21 21 H 1.08994 * 115.56354 * 299.41027 * 20 18 16 22 22 C 1.53069 * 117.51388 * 85.12200 * 20 18 16 23 23 C 1.52994 * 59.98878 * 107.47541 * 22 20 18 24 24 H 1.08997 * 117.50630 * 107.50058 * 23 22 20 25 25 C 1.53002 * 117.50011 * 252.50205 * 23 22 20 26 26 C 1.54884 * 110.59574 * 284.32928 * 25 23 22 27 27 C 1.54894 * 102.74800 * 203.32245 * 26 25 23 28 28 C 1.54267 * 104.19610 * 37.94447 * 27 26 25 29 29 C 1.53876 * 106.59679 * 336.38565 * 28 27 26 30 30 H 1.08994 * 109.47185 * 276.01463 * 1 2 3 31 31 H 1.09000 * 109.47158 * 36.01797 * 1 2 3 32 32 H 1.09002 * 109.47223 * 156.01220 * 1 2 3 33 33 H 0.97002 * 120.00550 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47309 * 149.99524 * 11 2 1 35 35 H 1.09001 * 109.47656 * 29.99913 * 11 2 1 36 36 H 1.08998 * 109.47251 * 304.99880 * 12 11 2 37 37 H 1.09000 * 109.47189 * 184.99856 * 12 11 2 38 38 H 1.08999 * 109.47482 * 60.00108 * 14 13 12 39 39 H 1.09006 * 109.47170 * 299.99630 * 14 13 12 40 40 H 1.08997 * 109.47023 * 304.99978 * 15 14 13 41 41 H 1.08997 * 109.47248 * 184.99527 * 15 14 13 42 42 H 1.08999 * 109.46711 * 269.99430 * 17 16 15 43 43 H 1.08995 * 109.47108 * 29.99292 * 17 16 15 44 44 H 1.09001 * 109.46921 * 150.00242 * 17 16 15 45 45 H 1.08998 * 117.51454 * 359.97438 * 22 20 18 46 46 H 1.09003 * 117.51218 * 214.94741 * 22 20 18 47 47 H 1.09002 * 110.43605 * 46.94717 * 25 23 22 48 48 H 1.09004 * 110.76078 * 85.00815 * 26 25 23 49 49 H 1.08994 * 110.75920 * 321.63271 * 26 25 23 50 50 H 1.09000 * 110.48747 * 279.26049 * 27 26 25 51 51 H 1.08996 * 110.48685 * 156.62411 * 27 26 25 52 52 H 1.08988 * 110.03430 * 95.67274 * 28 27 26 53 53 H 1.09005 * 110.03164 * 217.06098 * 28 27 26 54 54 H 1.09003 * 110.02856 * 119.28788 * 29 28 27 55 55 H 1.08990 * 110.03760 * 240.71967 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1059 1.2573 -0.4969 5 6 1.6147 2.2962 0.6385 6 7 0.5867 2.1577 1.4487 7 14 2.3537 3.9871 0.3480 8 1 1.5966 4.6804 -0.7250 9 1 2.2782 4.7820 1.6000 10 1 3.7736 3.8428 -0.0620 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 8 1.2060 -1.9944 2.0805 14 6 1.3324 -2.4179 3.4394 15 6 -0.0567 -2.6912 4.0198 16 7 -0.6658 -3.8227 3.3162 17 6 -1.4799 -3.5896 2.1208 18 6 -0.4771 -5.0782 3.7687 19 8 0.1965 -5.2712 4.7586 20 6 -1.1032 -6.2421 3.0447 21 1 -2.1916 -6.2300 2.9873 22 6 -0.3393 -6.8284 1.8548 23 6 -0.4177 -7.6042 3.1711 24 1 -1.0552 -8.4880 3.1974 25 6 0.8509 -7.6802 4.0231 26 6 1.8577 -8.6864 3.4125 27 6 2.7262 -9.0835 4.6320 28 6 1.7244 -9.1543 5.8030 29 6 0.5321 -8.2620 5.4158 30 1 -0.3633 0.1077 1.0219 31 1 -0.3633 0.8312 -0.6043 32 1 -0.3634 -0.9389 -0.4178 33 1 0.2125 2.9337 1.8946 34 1 3.1499 -1.1383 -0.5144 35 1 1.6084 -2.0282 -0.5147 36 1 2.9642 -0.9140 1.9811 37 1 3.0731 -2.6070 1.4426 38 1 1.8206 -1.6352 4.0200 39 1 1.9300 -3.3285 3.4822 40 1 -0.6824 -1.8073 3.8964 41 1 0.0326 -2.9281 5.0799 42 1 -2.5204 -3.4460 2.4122 43 1 -1.1209 -2.6993 1.6047 44 1 -1.4043 -4.4503 1.4562 45 1 0.6159 -6.3720 1.5954 46 1 -0.9252 -7.2019 1.0150 47 1 1.3061 -6.6942 4.1167 48 1 2.4656 -8.2072 2.6450 49 1 1.3386 -9.5555 3.0087 50 1 3.4844 -8.3242 4.8239 51 1 3.1915 -10.0555 4.4687 52 1 1.3906 -10.1817 5.9471 53 1 2.1897 -8.7816 6.7155 54 1 -0.3805 -8.8565 5.3721 55 1 0.4184 -7.4556 6.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489217618.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:15 Heat of formation + Delta-G solvation = -58.632971 kcal Electronic energy + Delta-G solvation = -31077.586791 eV Core-core repulsion = 27115.226589 eV Total energy + Delta-G solvation = -3962.360202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42935 -39.40826 -38.75422 -37.19663 -36.66117 -36.27866 -33.45829 -31.51877 -29.79736 -29.50026 -29.41015 -27.74736 -27.41177 -25.51369 -24.78429 -23.33102 -22.78404 -22.11969 -21.15608 -20.90940 -19.69530 -18.75206 -18.07278 -17.47703 -17.28523 -16.89387 -16.76746 -16.44568 -16.29209 -15.80959 -15.58832 -15.30739 -14.97782 -14.95906 -14.40281 -14.20461 -14.08708 -13.95114 -13.66726 -13.52690 -13.22959 -13.06967 -13.02412 -12.88331 -12.72215 -12.62853 -12.54285 -12.42528 -12.29228 -12.05953 -12.04312 -12.00628 -11.86373 -11.77166 -11.69277 -11.53189 -11.26040 -10.93079 -10.79171 -10.61723 -10.51272 -10.35227 -9.58708 -8.59955 -7.76043 -5.35245 1.46096 1.47162 1.55876 1.59006 2.02291 2.52087 2.81011 2.91232 3.33488 3.51812 3.73113 3.77492 3.78289 3.85795 4.04727 4.09415 4.12323 4.13833 4.29899 4.36871 4.44786 4.51926 4.53802 4.59059 4.62120 4.64074 4.65539 4.70814 4.73463 4.80207 4.83787 4.88399 4.93678 4.95377 4.96379 5.00200 5.01247 5.07254 5.12555 5.13863 5.17842 5.25219 5.31657 5.36577 5.41516 5.52090 5.58574 5.69363 5.72161 5.85312 6.38210 6.43154 6.51879 7.21395 7.22525 7.91955 8.41583 9.22636 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002403 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.799769 B =11649.707282 C =11883.414399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.607 5.607 3 C -0.270 4.270 4 H 0.063 0.937 5 C -0.043 4.043 6 N -0.923 5.923 7 Si 0.961 3.039 8 H -0.287 1.287 9 H -0.296 1.296 10 H -0.268 1.268 11 C 0.151 3.849 12 C 0.054 3.946 13 O -0.376 6.376 14 C 0.056 3.944 15 C 0.127 3.873 16 N -0.602 5.602 17 C 0.083 3.917 18 C 0.533 3.467 19 O -0.567 6.567 20 C -0.190 4.190 21 H 0.147 0.853 22 C -0.142 4.142 23 C -0.108 4.108 24 H 0.131 0.869 25 C -0.071 4.071 26 C -0.114 4.114 27 C -0.126 4.126 28 C -0.124 4.124 29 C -0.107 4.107 30 H 0.012 0.988 31 H -0.001 1.001 32 H 0.031 0.969 33 H 0.246 0.754 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.016 0.984 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.131 0.869 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.050 0.950 51 H 0.077 0.923 52 H 0.074 0.926 53 H 0.053 0.947 54 H 0.068 0.932 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -24.163 3.069 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.330 5.330 3 C -0.401 4.401 4 H 0.081 0.919 5 C -0.240 4.240 6 N -0.568 5.568 7 Si 0.789 3.211 8 H -0.213 1.213 9 H -0.223 1.223 10 H -0.193 1.193 11 C 0.025 3.975 12 C -0.025 4.025 13 O -0.295 6.295 14 C -0.022 4.022 15 C 0.004 3.996 16 N -0.333 5.333 17 C -0.059 4.059 18 C 0.323 3.677 19 O -0.447 6.447 20 C -0.211 4.211 21 H 0.165 0.835 22 C -0.179 4.179 23 C -0.126 4.126 24 H 0.148 0.852 25 C -0.089 4.089 26 C -0.151 4.151 27 C -0.163 4.163 28 C -0.161 4.161 29 C -0.145 4.145 30 H 0.030 0.970 31 H 0.018 0.982 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.149 0.851 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.093 0.907 53 H 0.072 0.928 54 H 0.087 0.913 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.618 -24.106 3.556 24.634 hybrid contribution 0.635 1.767 0.516 1.948 sum -2.983 -22.338 4.072 22.902 Atomic orbital electron populations 1.20447 0.82921 0.95132 0.97698 1.43984 1.02059 1.01205 1.85773 1.19413 1.04436 0.88702 1.27509 0.91886 1.25927 0.99303 1.02164 0.96587 1.70207 1.27013 1.28929 1.30659 0.85357 0.78612 0.80548 0.76535 1.21346 1.22329 1.19293 1.21067 0.96728 0.87498 0.92210 1.23185 0.85657 0.96756 0.96872 1.87901 1.30073 1.87307 1.24206 1.22747 0.97943 0.97148 0.84384 1.21360 0.92602 0.89216 0.96441 1.47838 1.50753 1.05563 1.29177 1.21891 0.94370 1.03448 0.86170 1.20317 0.79710 0.83751 0.83896 1.90613 1.41351 1.84827 1.27958 1.22263 1.00863 0.93131 1.04806 0.83540 1.23090 1.01192 1.01663 0.91961 1.22498 0.98412 0.93601 0.98118 0.85170 1.21738 0.93924 0.99339 0.93911 1.22503 0.96808 0.98824 0.97003 1.22352 0.97558 1.01327 0.95106 1.22143 0.95926 1.00075 0.98005 1.22004 0.98274 0.97989 0.96239 0.97000 0.98198 0.95086 0.94495 0.91538 0.91939 0.96599 0.93340 0.94148 0.94375 0.89936 0.88933 0.91422 0.91700 0.89262 0.90033 0.85113 0.91623 0.92444 0.90120 0.93105 0.90458 0.90696 0.92843 0.91322 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.00 8.73 127.77 1.12 10.11 16 2 N -0.61 -30.45 2.84 -726.96 -2.07 -32.52 16 3 C -0.27 -14.85 9.55 84.03 0.80 -14.05 16 4 H 0.06 3.39 7.86 -2.91 -0.02 3.36 16 5 C -0.04 -2.42 5.15 84.86 0.44 -1.98 16 6 N -0.92 -54.75 11.25 21.65 0.24 -54.51 16 7 Si 0.96 45.19 29.57 68.60 2.03 47.21 16 8 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 9 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 C 0.15 6.10 6.11 86.38 0.53 6.63 16 12 C 0.05 2.13 6.28 71.98 0.45 2.58 16 13 O -0.38 -14.65 8.72 -148.98 -1.30 -15.95 16 14 C 0.06 1.93 6.28 71.98 0.45 2.38 16 15 C 0.13 3.87 5.81 86.38 0.50 4.37 16 16 N -0.60 -16.11 2.84 -846.76 -2.40 -18.51 16 17 C 0.08 1.88 10.08 127.77 1.29 3.17 16 18 C 0.53 14.16 7.04 87.66 0.62 14.77 16 19 O -0.57 -18.49 12.77 -3.01 -0.04 -18.53 16 20 C -0.19 -3.49 4.53 -11.51 -0.05 -3.54 16 21 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 22 C -0.14 -2.18 9.31 30.62 0.29 -1.90 16 23 C -0.11 -1.80 4.93 -10.79 -0.05 -1.85 16 24 H 0.13 1.61 8.06 -2.39 -0.02 1.59 16 25 C -0.07 -1.48 2.06 -9.72 -0.02 -1.50 16 26 C -0.11 -1.97 6.33 31.88 0.20 -1.77 16 27 C -0.13 -2.16 6.83 31.67 0.22 -1.95 16 28 C -0.12 -2.18 6.80 31.32 0.21 -1.96 16 29 C -0.11 -2.21 6.26 31.32 0.20 -2.01 16 30 H 0.01 0.64 7.13 -2.39 -0.02 0.63 16 31 H 0.00 -0.04 7.94 -2.39 -0.02 -0.06 16 32 H 0.03 1.29 7.83 -2.39 -0.02 1.27 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.07 2.53 8.04 -2.39 -0.02 2.51 16 35 H 0.06 2.25 7.85 -2.39 -0.02 2.24 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 41 H 0.09 2.76 7.42 -2.39 -0.02 2.74 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.84 7.11 -2.39 -0.02 1.82 16 44 H 0.09 1.61 6.35 -2.39 -0.02 1.60 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.13 1.30 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.88 5.37 -2.39 -0.01 1.87 16 48 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.08 1.14 8.06 -2.39 -0.02 1.12 16 50 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 51 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 53 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 54 H 0.07 1.20 7.78 -2.39 -0.02 1.18 16 55 H 0.04 1.07 7.71 -2.39 -0.02 1.06 16 Total: -1.00 -67.93 428.16 4.47 -63.46 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.82 Total: 17.85 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.18 Total: 11.50 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.23 Total: -105.55 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.34 Total: -34.47 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.93 4.47 -63.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489217618.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.829 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds