Wall clock time and date at job start Tue Mar 31 2020 22:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 120.00038 * 2 1 4 4 H 1.07999 * 119.99567 * 202.68002 * 3 2 1 5 5 C 1.38813 * 120.00070 * 22.67976 * 3 2 1 6 6 N 1.31614 * 120.00014 * 11.49035 * 5 3 2 7 7 Si 1.86798 * 120.00075 * 191.49231 * 5 3 2 8 8 H 1.48495 * 109.47220 * 89.99570 * 7 5 3 9 9 H 1.48499 * 109.47097 * 210.00358 * 7 5 3 10 10 H 1.48508 * 109.46783 * 329.99814 * 7 5 3 11 11 C 1.46498 * 120.00151 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47127 * 270.00481 * 11 2 1 13 13 O 1.42892 * 109.47412 * 64.99662 * 12 11 2 14 14 C 1.42901 * 114.00369 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47639 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46868 * 64.99885 * 15 14 13 17 17 C 1.46507 * 119.99752 * 269.99903 * 16 15 14 18 18 C 1.34768 * 120.00155 * 90.00313 * 16 15 14 19 19 O 1.21280 * 120.00179 * 359.97438 * 18 16 15 20 20 C 1.50698 * 120.00007 * 179.97438 * 18 16 15 21 21 H 1.08999 * 115.56327 * 34.31268 * 20 18 16 22 22 C 1.53001 * 117.49961 * 248.61895 * 20 18 16 23 23 C 1.52997 * 60.00034 * 252.51095 * 22 20 18 24 24 H 1.09006 * 117.49708 * 107.51964 * 23 22 20 25 25 C 1.52999 * 117.49666 * 252.50662 * 23 22 20 26 26 C 1.54267 * 110.48952 * 248.60899 * 25 23 22 27 27 C 1.53873 * 106.64210 * 217.74141 * 26 25 23 28 28 C 1.54259 * 106.59998 * 359.97329 * 27 26 25 29 29 C 1.54889 * 104.19630 * 23.60982 * 28 27 26 30 30 H 1.08999 * 109.47159 * 273.93257 * 1 2 3 31 31 H 1.09005 * 109.47036 * 33.93270 * 1 2 3 32 32 H 1.08998 * 109.47093 * 153.92607 * 1 2 3 33 33 H 0.96993 * 120.00282 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.47562 * 149.99688 * 11 2 1 35 35 H 1.09004 * 109.46773 * 29.99825 * 11 2 1 36 36 H 1.09001 * 109.47080 * 304.99477 * 12 11 2 37 37 H 1.08999 * 109.47310 * 185.00169 * 12 11 2 38 38 H 1.09007 * 109.46968 * 59.99410 * 14 13 12 39 39 H 1.09003 * 109.46859 * 300.00174 * 14 13 12 40 40 H 1.09000 * 109.46659 * 305.00136 * 15 14 13 41 41 H 1.09002 * 109.47101 * 184.99808 * 15 14 13 42 42 H 1.08997 * 109.47012 * 270.00580 * 17 16 15 43 43 H 1.08998 * 109.47123 * 30.00230 * 17 16 15 44 44 H 1.09000 * 109.46834 * 150.00227 * 17 16 15 45 45 H 1.08999 * 117.50152 * 145.01693 * 22 20 18 46 46 H 1.09005 * 117.51647 * 359.97438 * 22 20 18 47 47 H 1.08998 * 110.54271 * 11.22106 * 25 23 22 48 48 H 1.09002 * 110.03409 * 98.42448 * 26 25 23 49 49 H 1.09008 * 110.02833 * 337.04835 * 26 25 23 50 50 H 1.08998 * 110.03162 * 119.26282 * 27 26 25 51 51 H 1.08998 * 110.02858 * 240.68880 * 27 26 25 52 52 H 1.08998 * 110.48666 * 142.29110 * 28 27 26 53 53 H 1.08997 * 110.48961 * 264.93718 * 28 27 26 54 54 H 1.09005 * 110.75523 * 80.37441 * 29 28 27 55 55 H 1.08994 * 110.76245 * 203.55727 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1670 1.2220 -0.3607 5 6 1.5361 2.3416 0.4635 6 7 0.3912 2.2657 1.1081 7 14 2.3355 4.0046 0.1724 8 1 1.8571 4.5649 -1.1169 9 1 1.9742 4.9279 1.2780 10 1 3.8110 3.8430 0.1247 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4433 13 8 1.2060 -1.9926 2.0822 14 6 1.3322 -2.4149 3.4415 15 6 -0.0568 -2.6878 4.0221 16 7 -0.6659 -3.8199 3.3195 17 6 -1.4801 -3.5877 2.1238 18 6 -0.4773 -5.0749 3.7730 19 8 0.1971 -5.2671 4.7625 20 6 -1.1043 -6.2393 3.0506 21 1 -1.1741 -6.1385 1.9675 22 6 -2.2303 -6.9901 3.7643 23 6 -0.8528 -7.6390 3.6149 24 1 -0.2341 -7.7181 4.5089 25 6 -0.7189 -8.7900 2.6159 26 6 -0.4694 -10.1207 3.3554 27 6 0.5305 -10.9191 2.5006 28 6 0.8539 -10.0465 1.2704 29 6 0.5435 -8.6025 1.7368 30 1 -0.3633 0.0705 1.0252 31 1 -0.3633 0.8527 -0.5737 32 1 -0.3633 -0.9231 -0.4517 33 1 -0.0377 3.0732 1.4317 34 1 3.1499 -1.1387 -0.5133 35 1 1.6084 -2.0286 -0.5129 36 1 2.9642 -0.9123 1.9820 37 1 3.0732 -2.6057 1.4450 38 1 1.8206 -1.6317 4.0215 39 1 1.9299 -3.3254 3.4851 40 1 -0.6824 -1.8039 3.8978 41 1 0.0325 -2.9237 5.0825 42 1 -2.5205 -3.4437 2.4151 43 1 -1.1210 -2.6978 1.6069 44 1 -1.4044 -4.4489 1.4599 45 1 -3.0410 -7.3830 3.1509 46 1 -2.5175 -6.6422 4.7567 47 1 -1.6103 -8.8613 1.9927 48 1 -1.4031 -10.6745 3.4528 49 1 -0.0463 -9.9264 4.3410 50 1 1.4390 -11.1117 3.0712 51 1 0.0819 -11.8605 2.1832 52 1 1.9055 -10.1425 1.0005 53 1 0.2167 -10.3210 0.4298 54 1 1.3679 -8.2014 2.3265 55 1 0.3315 -7.9581 0.8837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489217620.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:23 Heat of formation + Delta-G solvation = -61.762892 kcal Electronic energy + Delta-G solvation = -30444.843480 eV Core-core repulsion = 26482.347554 eV Total energy + Delta-G solvation = -3962.495926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32375 -39.54614 -38.90655 -37.29584 -36.63658 -36.31243 -33.46372 -31.55763 -29.83945 -29.53407 -29.42512 -27.79489 -27.44455 -25.65490 -24.77909 -23.17057 -22.86469 -22.12682 -21.23400 -20.66908 -19.88216 -18.78451 -18.30170 -17.62323 -17.23146 -17.01198 -16.69095 -16.52477 -16.22012 -16.06089 -15.41568 -15.27161 -15.21404 -14.74552 -14.52583 -14.20557 -14.12650 -13.87243 -13.61891 -13.45924 -13.37168 -13.21654 -13.02424 -12.89386 -12.70630 -12.60448 -12.53170 -12.44043 -12.27331 -12.13419 -12.02836 -11.99851 -11.87656 -11.78639 -11.70491 -11.49752 -11.27062 -11.13718 -10.89296 -10.72217 -10.60315 -10.40438 -9.67509 -8.71729 -7.77240 -5.24696 1.46290 1.47043 1.47906 1.56162 1.98107 2.53013 2.83377 2.88498 3.35437 3.42428 3.68404 3.75103 3.76985 3.83003 3.95887 4.07700 4.11224 4.13428 4.19332 4.33646 4.43749 4.48278 4.51633 4.52546 4.58089 4.62399 4.63337 4.66501 4.71656 4.77380 4.81821 4.83855 4.85654 4.89329 4.93108 4.98952 5.00630 5.06103 5.11875 5.13295 5.16791 5.24778 5.35141 5.37057 5.42405 5.48177 5.53704 5.58149 5.68190 5.87870 6.34410 6.38264 6.46731 7.13933 7.21176 7.93948 8.38538 9.25560 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.002213 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.077106 B =12647.917018 C =13254.636803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.612 5.612 3 C -0.261 4.261 4 H 0.070 0.930 5 C -0.054 4.054 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.286 1.286 9 H -0.298 1.298 10 H -0.270 1.270 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.378 6.378 14 C 0.053 3.947 15 C 0.125 3.875 16 N -0.601 5.601 17 C 0.082 3.918 18 C 0.535 3.465 19 O -0.590 6.590 20 C -0.192 4.192 21 H 0.142 0.858 22 C -0.130 4.130 23 C -0.111 4.111 24 H 0.091 0.909 25 C -0.056 4.056 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.124 4.124 29 C -0.122 4.122 30 H 0.005 0.995 31 H 0.009 0.991 32 H 0.023 0.977 33 H 0.245 0.755 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.132 0.868 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.075 0.925 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.073 0.927 52 H 0.062 0.938 53 H 0.075 0.925 54 H 0.048 0.952 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 -25.574 1.935 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.335 5.335 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.213 1.213 9 H -0.225 1.225 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.027 4.027 13 O -0.297 6.297 14 C -0.025 4.025 15 C 0.002 3.998 16 N -0.331 5.331 17 C -0.060 4.060 18 C 0.326 3.674 19 O -0.471 6.471 20 C -0.213 4.213 21 H 0.160 0.840 22 C -0.167 4.167 23 C -0.129 4.129 24 H 0.109 0.891 25 C -0.074 4.074 26 C -0.155 4.155 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.159 4.159 30 H 0.023 0.977 31 H 0.027 0.973 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.151 0.849 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.092 0.908 52 H 0.081 0.919 53 H 0.093 0.907 54 H 0.067 0.933 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.612 -25.505 2.384 26.224 hybrid contribution 0.919 1.657 0.490 1.957 sum -4.692 -23.848 2.874 24.474 Atomic orbital electron populations 1.20371 0.82423 0.94927 0.97338 1.44110 1.02390 1.01278 1.85767 1.19545 0.98328 0.86741 1.34531 0.91199 1.25764 0.98621 1.01648 0.98892 1.70250 1.19438 1.27101 1.41238 0.85296 0.78392 0.80211 0.76706 1.21320 1.22457 1.19471 1.21060 0.96789 0.87340 0.92365 1.23235 0.85657 0.97031 0.96806 1.87902 1.30199 1.87378 1.24254 1.22783 0.97916 0.97421 0.84366 1.21413 0.92755 0.89189 0.96472 1.47786 1.50578 1.05476 1.29295 1.21962 0.94563 1.03499 0.85990 1.20301 0.79542 0.84027 0.83558 1.90638 1.42263 1.85435 1.28782 1.22282 1.06988 0.91183 1.00827 0.84041 1.23158 0.91847 1.00208 1.01492 1.22399 0.99570 0.90708 1.00265 0.89091 1.21622 0.98865 0.92175 0.94721 1.22181 0.99771 0.95017 0.98549 1.22154 0.99011 0.98847 0.96335 1.22361 1.01427 0.94343 0.98061 1.22532 0.97223 0.97256 0.98902 0.97663 0.97261 0.95843 0.94571 0.91298 0.91928 0.96253 0.93122 0.93645 0.94317 0.89568 0.88933 0.91126 0.91500 0.89222 0.84948 0.89259 0.88832 0.90584 0.92581 0.92385 0.90835 0.91878 0.90657 0.93283 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.69 8.61 127.77 1.10 10.79 16 2 N -0.61 -30.78 2.89 -726.94 -2.10 -32.87 16 3 C -0.26 -14.35 9.67 84.03 0.81 -13.53 16 4 H 0.07 3.71 7.85 -2.91 -0.02 3.69 16 5 C -0.05 -3.06 5.12 84.86 0.43 -2.62 16 6 N -0.93 -55.59 10.61 21.65 0.23 -55.36 16 7 Si 0.97 45.46 29.57 68.60 2.03 47.49 16 8 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 9 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 C 0.15 6.04 6.11 86.38 0.53 6.57 16 12 C 0.05 1.99 6.28 71.98 0.45 2.44 16 13 O -0.38 -14.60 8.72 -148.98 -1.30 -15.90 16 14 C 0.05 1.81 6.28 71.98 0.45 2.27 16 15 C 0.12 3.79 5.81 86.38 0.50 4.29 16 16 N -0.60 -16.37 2.84 -846.75 -2.40 -18.77 16 17 C 0.08 1.84 10.08 127.77 1.29 3.13 16 18 C 0.54 14.90 7.46 87.66 0.65 15.55 16 19 O -0.59 -20.73 15.84 -3.03 -0.05 -20.77 16 20 C -0.19 -3.71 4.82 -11.54 -0.06 -3.77 16 21 H 0.14 2.22 6.44 -2.39 -0.02 2.21 16 22 C -0.13 -1.95 9.89 30.59 0.30 -1.64 16 23 C -0.11 -1.98 4.61 -10.79 -0.05 -2.03 16 24 H 0.09 2.12 7.38 -2.38 -0.02 2.11 16 25 C -0.06 -0.76 3.01 -9.69 -0.03 -0.79 16 26 C -0.12 -1.50 6.37 31.32 0.20 -1.30 16 27 C -0.13 -1.52 6.80 31.32 0.21 -1.31 16 28 C -0.12 -1.58 6.83 31.67 0.22 -1.37 16 29 C -0.12 -1.88 6.16 31.91 0.20 -1.69 16 30 H 0.01 0.28 7.43 -2.39 -0.02 0.26 16 31 H 0.01 0.48 7.20 -2.38 -0.02 0.46 16 32 H 0.02 0.99 7.85 -2.39 -0.02 0.97 16 33 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 35 H 0.06 2.26 7.87 -2.38 -0.02 2.24 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 2.66 8.07 -2.39 -0.02 2.64 16 41 H 0.09 2.76 7.42 -2.39 -0.02 2.75 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.88 7.11 -2.39 -0.02 1.86 16 44 H 0.09 1.57 6.00 -2.39 -0.01 1.56 16 45 H 0.13 1.23 8.09 -2.39 -0.02 1.21 16 46 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.09 1.00 7.98 -2.39 -0.02 0.98 16 48 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 0.83 7.65 -2.38 -0.02 0.82 16 50 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 53 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.05 0.96 8.06 -2.38 -0.02 0.94 16 55 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.47 432.17 4.45 -65.01 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.83 Total: 16.19 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 7.22 Total: 14.99 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.27 Total: -107.01 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.35 Total: -36.68 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.47 4.45 -65.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489217620.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.252 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds