Wall clock time and date at job start Tue Mar 31 2020 22:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99892 * 2 1 4 4 C 1.53005 * 109.46893 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47259 * 60.00383 * 4 3 2 6 6 O 1.21274 * 120.00239 * 119.99640 * 5 4 3 7 7 N 1.34776 * 119.99749 * 300.00011 * 5 4 3 8 8 C 1.46497 * 120.00102 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47556 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47274 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47231 * 179.97438 * 10 9 8 12 12 C 1.36942 * 120.00036 * 270.00229 * 11 10 9 13 13 H 1.08004 * 119.99860 * 140.53567 * 12 11 10 14 14 C 1.38812 * 119.99877 * 320.52522 * 12 11 10 15 15 N 1.31614 * 120.00065 * 340.29665 * 14 12 11 16 16 Si 1.86797 * 119.99576 * 160.28670 * 14 12 11 17 17 H 1.48505 * 109.47111 * 60.00908 * 16 14 12 18 18 H 1.48505 * 109.47007 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47505 * 300.00388 * 16 14 12 20 20 C 1.46501 * 120.00169 * 90.00032 * 11 10 9 21 21 C 1.52998 * 117.50358 * 183.29053 * 20 11 10 22 22 C 1.52990 * 117.50208 * 114.66491 * 20 11 10 23 23 C 1.53000 * 109.47161 * 300.00052 * 4 3 2 24 24 C 1.52998 * 109.47116 * 180.02562 * 23 4 3 25 25 C 1.52998 * 109.47097 * 59.99886 * 24 23 4 26 26 C 1.53004 * 109.47343 * 300.00397 * 25 24 23 27 27 C 1.52998 * 109.47348 * 59.99757 * 26 25 24 28 28 H 1.08993 * 109.47323 * 59.99780 * 1 2 3 29 29 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46815 * 299.99468 * 1 2 3 31 31 H 1.08998 * 109.46751 * 300.00070 * 3 2 1 32 32 H 1.08999 * 109.46530 * 60.00636 * 3 2 1 33 33 H 0.96998 * 120.00216 * 359.97438 * 7 5 4 34 34 H 1.09003 * 109.46741 * 299.99706 * 8 7 5 35 35 H 1.09007 * 109.47528 * 59.98988 * 8 7 5 36 36 H 1.09003 * 109.47013 * 299.99732 * 9 8 7 37 37 H 1.08993 * 109.47345 * 59.99220 * 9 8 7 38 38 H 1.09000 * 109.47533 * 300.00017 * 10 9 8 39 39 H 1.09001 * 109.47299 * 60.00071 * 10 9 8 40 40 H 0.97005 * 119.99779 * 175.00919 * 15 14 12 41 41 H 1.09007 * 115.54786 * 328.99714 * 20 11 10 42 42 H 1.09005 * 117.49671 * 359.97438 * 21 20 11 43 43 H 1.08993 * 117.49968 * 145.01765 * 21 20 11 44 44 H 1.08999 * 117.50437 * 214.97918 * 22 20 11 45 45 H 1.09006 * 117.49892 * 359.97438 * 22 20 11 46 46 H 1.09006 * 109.47246 * 300.00636 * 23 4 3 47 47 H 1.09004 * 109.46869 * 60.00366 * 23 4 3 48 48 H 1.09000 * 109.46697 * 300.00198 * 24 23 4 49 49 H 1.09003 * 109.47056 * 180.02562 * 24 23 4 50 50 H 1.09001 * 109.47548 * 179.97438 * 25 24 23 51 51 H 1.09007 * 109.47175 * 60.00197 * 25 24 23 52 52 H 1.09000 * 109.46502 * 299.99446 * 26 25 24 53 53 H 1.09000 * 109.46863 * 180.02562 * 26 25 24 54 54 H 1.08994 * 109.47132 * 179.97438 * 27 26 25 55 55 H 1.09000 * 109.46697 * 60.00082 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9797 0.4371 -1.2315 6 8 4.7209 0.9698 -2.0299 7 7 3.5531 -0.8234 -1.4448 8 6 3.9853 -1.5504 -2.6410 9 6 3.3634 -2.9483 -2.6409 10 6 3.8143 -3.7072 -3.8905 11 7 3.2193 -5.0459 -3.8900 12 6 3.8802 -6.0888 -3.2976 13 1 3.3297 -6.8237 -2.7290 14 6 5.2576 -6.2013 -3.4280 15 7 5.8800 -5.5719 -4.4020 16 14 6.2277 -7.2458 -2.2209 17 1 5.7458 -8.6492 -2.2819 18 1 7.6693 -7.2013 -2.5748 19 1 6.0395 -6.7171 -0.8460 20 6 1.9172 -5.2691 -4.5233 21 6 1.3136 -6.6713 -4.4226 22 6 1.8770 -6.1748 -5.7556 23 6 3.9874 0.4252 1.2483 24 6 5.5127 0.3049 1.2479 25 6 6.1345 1.7028 1.2482 26 6 5.6825 2.4624 -0.0006 27 6 4.1572 2.5827 -0.0003 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6885 1.8464 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 2.9605 -1.2496 -0.8060 34 1 3.6636 -1.0094 -3.5309 35 1 5.0719 -1.6365 -2.6412 36 1 3.6854 -3.4891 -1.7509 37 1 2.2768 -2.8626 -2.6405 38 1 3.4920 -3.1663 -4.7802 39 1 4.9009 -3.7930 -3.8912 40 1 6.8487 -5.5912 -4.4509 41 1 1.2311 -4.4224 -4.4984 42 1 1.8855 -7.4281 -3.8855 43 1 0.2302 -6.7475 -4.3312 44 1 1.1641 -5.9245 -6.5413 45 1 2.8194 -6.6044 -6.0955 46 1 3.6661 0.9659 2.1385 47 1 3.5441 -0.5707 1.2482 48 1 5.8343 -0.2356 0.3577 49 1 5.8346 -0.2366 2.1375 50 1 7.2211 1.6172 1.2485 51 1 5.8129 2.2434 2.1385 52 1 6.0042 1.9219 -0.8908 53 1 6.1259 3.4581 -0.0006 54 1 3.8353 3.1242 -0.8898 55 1 3.8356 3.1232 0.8899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490374570.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:29 Heat of formation + Delta-G solvation = -76.249206 kcal Electronic energy + Delta-G solvation = -31381.341981 eV Core-core repulsion = 27418.217882 eV Total energy + Delta-G solvation = -3963.124099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.84351 -38.98158 -38.70518 -38.04212 -36.53349 -35.22488 -33.61055 -32.93674 -31.71215 -30.83737 -27.97054 -27.24624 -26.05485 -25.46942 -23.58329 -23.48377 -22.97700 -22.42377 -21.69116 -21.48036 -20.17729 -18.26076 -17.63644 -17.36920 -17.23005 -17.10151 -16.68604 -16.51235 -16.33948 -16.05205 -15.70341 -15.40098 -15.21174 -14.90933 -14.60296 -14.49805 -14.27745 -13.90988 -13.66376 -13.49492 -13.20899 -13.10507 -12.99665 -12.94720 -12.78258 -12.67474 -12.61441 -12.46273 -12.28164 -12.14405 -12.04664 -11.97635 -11.85589 -11.61927 -11.40547 -11.28580 -11.09363 -11.02050 -10.89470 -10.61638 -10.47569 -10.40678 -9.92446 -8.49119 -7.77953 -5.50601 1.44056 1.46403 1.52542 1.70961 2.28283 2.49305 2.75352 3.16662 3.41898 3.50648 3.63406 3.66067 3.84455 4.00601 4.16457 4.18720 4.26476 4.28570 4.32777 4.38268 4.46929 4.48536 4.53264 4.55916 4.57817 4.60985 4.61348 4.63816 4.67086 4.75036 4.75998 4.90725 4.94179 4.95747 4.96266 5.04425 5.07740 5.11544 5.13049 5.23337 5.28126 5.37054 5.37611 5.38778 5.46118 5.52823 5.56723 5.67933 5.71849 5.81237 6.19835 6.47079 6.72079 7.16534 7.38944 7.85017 8.37539 9.11019 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003176 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.921699 B = 8812.834632 C =10051.589272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.075 3.925 4 C -0.070 4.070 5 C 0.518 3.482 6 O -0.583 6.583 7 N -0.707 5.707 8 C 0.134 3.866 9 C -0.117 4.117 10 C 0.157 3.843 11 N -0.568 5.568 12 C -0.261 4.261 13 H 0.060 0.940 14 C -0.032 4.032 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.296 1.296 19 H -0.276 1.276 20 C 0.102 3.898 21 C -0.178 4.178 22 C -0.221 4.221 23 C -0.097 4.097 24 C -0.127 4.127 25 C -0.113 4.113 26 C -0.135 4.135 27 C -0.087 4.087 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.413 0.587 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.059 0.941 40 H 0.250 0.750 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.051 0.949 46 H 0.101 0.899 47 H 0.068 0.932 48 H 0.027 0.973 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.085 0.915 52 H 0.054 0.946 53 H 0.070 0.930 54 H 0.059 0.941 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 17.005 14.277 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.329 6.329 3 C -0.002 4.002 4 C -0.073 4.073 5 C 0.306 3.694 6 O -0.464 6.464 7 N -0.360 5.360 8 C 0.009 3.991 9 C -0.157 4.157 10 C 0.030 3.970 11 N -0.285 5.285 12 C -0.391 4.391 13 H 0.077 0.923 14 C -0.230 4.230 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.200 1.200 18 H -0.222 1.222 19 H -0.202 1.202 20 C -0.006 4.006 21 C -0.216 4.216 22 C -0.262 4.262 23 C -0.134 4.134 24 C -0.165 4.165 25 C -0.151 4.151 26 C -0.172 4.172 27 C -0.125 4.125 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.252 0.748 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.130 0.870 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.118 0.882 45 H 0.070 0.930 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.103 0.897 52 H 0.073 0.927 53 H 0.089 0.911 54 H 0.077 0.923 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.819 17.139 13.628 23.998 hybrid contribution 0.718 -0.956 0.005 1.195 sum -9.101 16.183 13.633 23.035 Atomic orbital electron populations 1.22877 0.79120 1.03702 1.00871 1.87710 1.21601 1.27984 1.95570 1.22559 0.90104 0.85275 1.02270 1.20994 0.95557 0.97424 0.93296 1.20997 0.79276 0.81589 0.87542 1.90599 1.38100 1.68796 1.48913 1.46150 1.50149 1.14550 1.25163 1.21057 0.98012 0.92248 0.87770 1.22042 1.00238 0.92843 1.00618 1.20631 0.99486 0.83541 0.93319 1.43531 1.17888 1.04594 1.62526 1.19154 0.90044 1.05541 1.24382 0.92283 1.25880 0.99286 1.00040 0.97781 1.70182 1.07916 1.47546 1.30139 0.85620 0.77386 0.79428 0.79735 1.20014 1.22194 1.20217 1.21544 0.89576 0.92920 0.96554 1.23008 0.99795 0.98529 1.00282 1.23248 1.01151 1.09254 0.92558 1.21536 0.95153 1.00710 0.96050 1.21604 0.95965 0.97838 1.01089 1.21523 0.99830 0.95212 0.98517 1.21734 0.95778 1.00837 0.98872 1.21313 0.95381 0.92667 1.03105 0.93941 0.89041 0.92121 0.93198 0.88983 0.74781 0.92649 0.94286 0.93132 0.91453 0.95319 0.92272 0.94121 0.87023 0.90822 0.86967 0.88156 0.93028 0.88027 0.91339 0.95451 0.90504 0.92579 0.89672 0.92707 0.91091 0.92269 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -7.46 7.53 -148.98 -1.12 -8.58 16 3 C 0.07 1.20 4.79 71.98 0.35 1.55 16 4 C -0.07 -1.42 0.52 -52.93 -0.03 -1.45 16 5 C 0.52 15.63 4.96 87.66 0.43 16.07 16 6 O -0.58 -22.00 13.66 -3.01 -0.04 -22.04 16 7 N -0.71 -21.62 5.09 -463.07 -2.36 -23.98 16 8 C 0.13 4.83 5.67 86.38 0.49 5.32 16 9 C -0.12 -4.47 5.65 30.59 0.17 -4.29 16 10 C 0.16 7.30 5.33 86.38 0.46 7.76 16 11 N -0.57 -27.86 2.75 -678.04 -1.86 -29.72 16 12 C -0.26 -14.04 8.47 84.03 0.71 -13.33 16 13 H 0.06 3.17 6.75 -2.91 -0.02 3.15 16 14 C -0.03 -1.77 4.98 84.86 0.42 -1.35 16 15 N -0.91 -53.97 11.50 21.65 0.25 -53.72 16 16 Si 0.95 44.73 29.60 68.60 2.03 46.76 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 C 0.10 4.24 6.56 44.99 0.30 4.53 16 21 C -0.18 -6.72 9.80 30.59 0.30 -6.42 16 22 C -0.22 -8.95 10.36 30.59 0.32 -8.63 16 23 C -0.10 -1.75 4.49 30.59 0.14 -1.61 16 24 C -0.13 -2.71 5.70 30.59 0.17 -2.53 16 25 C -0.11 -2.11 5.92 30.59 0.18 -1.93 16 26 C -0.13 -2.95 5.63 30.59 0.17 -2.77 16 27 C -0.09 -1.60 4.37 30.59 0.13 -1.47 16 28 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.41 11.40 5.85 -92.71 -0.54 10.86 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 39 H 0.06 3.22 5.59 -2.39 -0.01 3.21 16 40 H 0.25 14.40 8.32 -92.70 -0.77 13.63 16 41 H 0.11 4.00 8.14 -2.38 -0.02 3.98 16 42 H 0.07 3.14 6.46 -2.38 -0.02 3.12 16 43 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.05 2.50 8.14 -2.38 -0.02 2.48 16 46 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.07 1.36 7.10 -2.38 -0.02 1.34 16 48 H 0.03 0.77 7.22 -2.39 -0.02 0.76 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 52 H 0.05 1.67 5.51 -2.39 -0.01 1.66 16 53 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 55 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -68.03 419.36 3.17 -64.86 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.30 Total: 35.34 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.97 Total: -8.93 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -3.97 Total: -107.41 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.16 Total: -30.62 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.03 3.17 -64.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490374570.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.390 kcal (2) G-P(sol) polarization free energy of solvation -68.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds