Wall clock time and date at job start Tue Mar 31 2020 22:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99405 * 2 1 4 4 C 1.53001 * 109.46910 * 209.99727 * 3 2 1 5 5 C 1.52998 * 109.47723 * 300.00674 * 4 3 2 6 6 C 1.53006 * 109.46416 * 299.99756 * 5 4 3 7 7 C 1.53001 * 109.46899 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47404 * 175.00096 * 7 6 5 9 9 O 1.21286 * 119.99751 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00419 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00193 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47179 * 179.97438 * 11 10 8 13 13 C 1.52993 * 109.47105 * 179.97438 * 12 11 10 14 14 N 1.46504 * 109.47058 * 179.97438 * 13 12 11 15 15 C 1.36935 * 119.99937 * 270.00095 * 14 13 12 16 16 H 1.08003 * 119.99855 * 144.92770 * 15 14 13 17 17 C 1.38814 * 120.00273 * 324.92932 * 15 14 13 18 18 N 1.31620 * 119.99838 * 337.93463 * 17 15 14 19 19 Si 1.86801 * 120.00091 * 157.93681 * 17 15 14 20 20 H 1.48501 * 109.46754 * 89.99914 * 19 17 15 21 21 H 1.48495 * 109.46949 * 209.99670 * 19 17 15 22 22 H 1.48495 * 109.47225 * 330.00128 * 19 17 15 23 23 C 1.46494 * 119.99631 * 90.00309 * 14 13 12 24 24 C 1.53008 * 117.49603 * 183.23516 * 23 14 13 25 25 C 1.53005 * 117.50060 * 114.58020 * 23 14 13 26 26 C 1.52999 * 109.47366 * 60.00158 * 6 5 4 27 27 C 1.53001 * 109.46816 * 299.99689 * 26 6 5 28 28 H 1.09003 * 109.47767 * 60.00227 * 1 2 3 29 29 H 1.09007 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47282 * 299.99431 * 1 2 3 31 31 H 1.08996 * 109.47385 * 330.00072 * 3 2 1 32 32 H 1.08997 * 109.47295 * 180.02562 * 4 3 2 33 33 H 1.09008 * 109.46865 * 60.00100 * 4 3 2 34 34 H 1.08990 * 109.47505 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47172 * 59.99389 * 5 4 3 36 36 H 1.08997 * 109.47151 * 299.99646 * 6 5 4 37 37 H 1.09004 * 109.47439 * 54.99892 * 7 6 5 38 38 H 1.09008 * 109.47108 * 295.00265 * 7 6 5 39 39 H 0.96999 * 119.99484 * 359.97438 * 10 8 7 40 40 H 1.08999 * 109.46741 * 59.99753 * 11 10 8 41 41 H 1.08998 * 109.46801 * 300.00115 * 11 10 8 42 42 H 1.09002 * 109.46733 * 59.99597 * 12 11 10 43 43 H 1.09002 * 109.46889 * 300.00553 * 12 11 10 44 44 H 1.09004 * 109.46724 * 60.00538 * 13 12 11 45 45 H 1.08991 * 109.47467 * 300.00398 * 13 12 11 46 46 H 0.96995 * 119.99672 * 176.06957 * 18 17 15 47 47 H 1.08998 * 115.55292 * 328.90743 * 23 14 13 48 48 H 1.09004 * 117.49709 * 0.02562 * 24 23 14 49 49 H 1.09001 * 117.49616 * 145.02232 * 24 23 14 50 50 H 1.08992 * 117.50031 * 214.97936 * 25 23 14 51 51 H 1.09007 * 117.49694 * 359.97438 * 25 23 14 52 52 H 1.09004 * 109.47050 * 59.99508 * 26 6 5 53 53 H 1.08997 * 109.47651 * 179.97438 * 26 6 5 54 54 H 1.08997 * 109.47097 * 300.00141 * 27 26 6 55 55 H 1.09007 * 109.47034 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.3588 1.2634 -0.7212 5 6 4.2927 0.2894 -0.0001 6 6 4.5001 0.7554 1.4424 7 6 5.4335 -0.2189 2.1639 8 6 5.7359 0.3041 3.5444 9 8 5.2528 1.3532 3.9147 10 7 6.5440 -0.3933 4.3673 11 6 6.8384 0.1155 5.7092 12 6 7.7717 -0.8589 6.4306 13 6 8.0796 -0.3272 7.8318 14 7 8.9728 -1.2605 8.5228 15 6 8.4502 -2.2796 9.2735 16 1 8.9528 -3.2348 9.3118 17 6 7.2745 -2.0849 9.9854 18 7 6.8927 -0.8666 10.3050 19 14 6.2342 -3.5522 10.4897 20 1 6.6709 -4.0330 11.8251 21 1 4.8064 -3.1488 10.5515 22 1 6.3983 -4.6412 9.4936 23 6 10.4250 -1.1035 8.4107 24 6 11.3039 -2.1539 9.0929 25 6 11.1971 -0.7451 9.6821 26 6 3.1514 0.7975 2.1638 27 6 2.2176 1.7715 1.4425 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.3448 1.9994 -0.5138 32 1 3.8023 2.2591 -0.7208 33 1 3.2110 0.9315 -1.7489 34 1 5.2536 0.2598 -0.5136 35 1 3.8494 -0.7063 -0.0001 36 1 4.9434 1.7512 1.4424 37 1 6.3618 -0.3169 1.6010 38 1 4.9514 -1.1935 2.2420 39 1 6.9306 -1.2321 4.0710 40 1 5.9103 0.2135 6.2723 41 1 7.3202 1.0900 5.6306 42 1 8.6998 -0.9573 5.8675 43 1 7.2894 -1.8332 6.5091 44 1 7.1516 -0.2286 8.3950 45 1 8.5620 0.6469 7.7529 46 1 6.0435 -0.7261 10.7521 47 1 10.7812 -0.6831 7.4702 48 1 10.8015 -2.9619 9.6247 49 1 12.2385 -2.4242 8.6013 50 1 12.0614 -0.0893 9.5780 51 1 10.6245 -0.6258 10.6019 52 1 2.7081 -0.1984 2.1637 53 1 3.2992 1.1290 3.1915 54 1 2.6609 2.7672 1.4425 55 1 1.2565 1.8011 1.9561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490393573.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:35 Heat of formation + Delta-G solvation = -81.844733 kcal Electronic energy + Delta-G solvation = -29672.359511 eV Core-core repulsion = 25708.992771 eV Total energy + Delta-G solvation = -3963.366740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.09970 -39.95936 -38.85721 -37.29594 -36.49353 -35.23290 -33.44847 -32.81776 -31.65120 -31.10462 -28.38496 -27.31092 -26.73788 -25.01676 -23.61227 -23.06779 -22.63075 -22.39838 -21.53777 -20.96278 -20.50911 -18.27067 -17.87331 -17.34739 -17.19974 -16.93202 -16.79443 -16.53079 -16.32308 -16.24478 -15.78861 -15.29211 -15.01649 -14.93879 -14.65365 -14.40372 -14.06062 -13.91826 -13.74686 -13.58604 -13.25366 -13.21631 -12.94471 -12.88996 -12.74057 -12.58735 -12.46493 -12.35201 -12.23765 -12.11105 -12.03526 -11.96945 -11.81777 -11.49440 -11.42494 -11.30255 -11.28940 -10.96460 -10.90696 -10.67240 -10.46389 -10.27835 -10.00210 -8.53208 -7.79490 -5.44425 1.43049 1.46767 1.55136 1.73318 2.28978 2.49980 2.93292 3.15201 3.41607 3.51666 3.73048 3.79732 3.86565 3.98531 4.18297 4.21917 4.24692 4.29495 4.32542 4.44621 4.47357 4.49722 4.51063 4.56030 4.60988 4.61615 4.63456 4.67795 4.73748 4.77039 4.85153 4.86255 4.92517 4.95011 4.99680 5.08184 5.08562 5.14001 5.18025 5.20331 5.31650 5.36865 5.37082 5.47622 5.49114 5.55239 5.58602 5.65242 5.68983 5.86244 6.35013 6.45208 6.65831 7.15338 7.35683 7.86663 8.35925 9.11132 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002019 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.014782 B =13862.897108 C =14942.698519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.088 3.912 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.066 4.066 7 C -0.129 4.129 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.720 5.720 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.147 3.853 14 N -0.568 5.568 15 C -0.255 4.255 16 H 0.063 0.937 17 C -0.040 4.040 18 N -0.915 5.915 19 Si 0.951 3.049 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.268 1.268 23 C 0.101 3.899 24 C -0.180 4.180 25 C -0.223 4.223 26 C -0.111 4.111 27 C -0.138 4.138 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.414 0.586 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.028 0.972 46 H 0.249 0.751 47 H 0.115 0.885 48 H 0.074 0.926 49 H 0.113 0.887 50 H 0.101 0.899 51 H 0.052 0.948 52 H 0.054 0.946 53 H 0.048 0.952 54 H 0.070 0.930 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 1.865 -25.390 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.169 4.169 8 C 0.291 3.709 9 O -0.463 6.463 10 N -0.373 5.373 11 C 0.010 3.990 12 C -0.160 4.160 13 C 0.021 3.979 14 N -0.285 5.285 15 C -0.385 4.385 16 H 0.080 0.920 17 C -0.237 4.237 18 N -0.559 5.559 19 Si 0.779 3.221 20 H -0.214 1.214 21 H -0.220 1.220 22 H -0.192 1.192 23 C -0.007 4.007 24 C -0.218 4.218 25 C -0.264 4.264 26 C -0.149 4.149 27 C -0.175 4.175 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.250 0.750 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.132 0.868 48 H 0.093 0.907 49 H 0.131 0.869 50 H 0.119 0.881 51 H 0.070 0.930 52 H 0.073 0.927 53 H 0.066 0.934 54 H 0.089 0.911 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.195 2.484 -24.989 25.865 hybrid contribution -0.882 -0.567 1.244 1.627 sum -7.078 1.917 -23.745 24.852 Atomic orbital electron populations 1.22897 0.80601 1.03344 1.00290 1.87895 1.20321 1.28391 1.95069 1.22204 0.95548 0.84438 0.94785 1.21650 0.93435 1.00823 0.99279 1.21453 0.99858 0.99497 0.93317 1.20862 0.94324 0.98384 0.94922 1.21797 1.02984 1.01250 0.90832 1.21462 0.77248 0.83928 0.88251 1.90652 1.52651 1.25234 1.77776 1.46080 1.49795 1.26453 1.14930 1.21045 0.98108 0.97400 0.82472 1.22061 0.98428 0.98226 0.97290 1.20763 0.96340 0.90140 0.90656 1.43605 0.99132 1.32287 1.53488 1.19228 1.07238 0.91210 1.20873 0.91960 1.25775 1.02640 0.97922 0.97349 1.70173 1.21838 1.21622 1.42313 0.85552 0.78008 0.80368 0.78185 1.21402 1.22046 1.19248 1.21572 0.83271 1.01669 0.94188 1.23043 1.01298 0.92464 1.05004 1.23288 1.03774 0.99070 1.00292 1.21497 0.95166 0.99287 0.98935 1.21980 0.99474 0.99450 0.96641 0.92955 0.89047 0.94370 0.91203 0.89947 0.90365 0.90282 0.91568 0.91881 0.86087 0.87504 0.75000 0.94341 0.92433 0.91119 0.92882 0.91558 0.95316 0.94153 0.86759 0.90741 0.86930 0.88082 0.92967 0.92698 0.93374 0.91137 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.40 -7.20 9.00 -148.98 -1.34 -8.54 16 3 C 0.09 1.39 2.92 30.60 0.09 1.48 16 4 C -0.11 -1.54 5.66 30.59 0.17 -1.36 16 5 C -0.10 -1.50 5.06 30.60 0.15 -1.35 16 6 C -0.07 -1.27 1.84 -10.79 -0.02 -1.29 16 7 C -0.13 -2.32 5.17 29.85 0.15 -2.16 16 8 C 0.50 13.71 7.55 87.66 0.66 14.37 16 9 O -0.58 -20.95 13.97 -3.05 -0.04 -21.00 16 10 N -0.72 -18.94 5.56 -463.06 -2.57 -21.51 16 11 C 0.13 4.49 5.67 86.38 0.49 4.98 16 12 C -0.12 -4.28 5.65 30.59 0.17 -4.11 16 13 C 0.15 6.67 5.34 86.38 0.46 7.13 16 14 N -0.57 -27.19 2.78 -678.03 -1.88 -29.07 16 15 C -0.26 -13.49 8.63 84.03 0.73 -12.77 16 16 H 0.06 3.28 6.55 -2.91 -0.02 3.26 16 17 C -0.04 -2.18 4.96 84.86 0.42 -1.76 16 18 N -0.92 -53.37 11.33 21.65 0.25 -53.13 16 19 Si 0.95 44.27 29.61 68.60 2.03 46.30 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.10 4.09 6.56 45.00 0.30 4.38 16 24 C -0.18 -6.64 9.80 30.62 0.30 -6.34 16 25 C -0.22 -8.83 10.36 30.62 0.32 -8.51 16 26 C -0.11 -2.59 4.80 30.59 0.15 -2.45 16 27 C -0.14 -2.68 5.63 30.60 0.17 -2.51 16 28 H 0.05 0.53 8.09 -2.39 -0.02 0.51 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.04 0.51 7.87 -2.38 -0.02 0.49 16 31 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.06 7.68 -2.39 -0.02 1.04 16 36 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 37 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.41 8.29 8.47 -92.71 -0.79 7.50 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.07 3.54 5.35 -2.38 -0.01 3.53 16 45 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 46 H 0.25 14.20 8.32 -92.71 -0.77 13.43 16 47 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 48 H 0.07 3.09 6.37 -2.38 -0.02 3.08 16 49 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 50 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 51 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 52 H 0.05 1.32 7.68 -2.38 -0.02 1.30 16 53 H 0.05 1.45 5.95 -2.39 -0.01 1.43 16 54 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 55 H 0.05 1.09 7.87 -2.38 -0.02 1.08 16 Total: -1.00 -68.19 426.12 2.44 -65.75 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.06 Total: 31.91 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.94 Total: -10.71 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.21 Total: -103.71 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.38 Total: -29.54 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.19 2.44 -65.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490393573.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.098 kcal (2) G-P(sol) polarization free energy of solvation -68.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds