Wall clock time and date at job start Tue Mar 31 2020 23:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00214 * 2 1 4 4 H 1.48500 * 109.47246 * 269.99643 * 3 2 1 5 5 H 1.48498 * 109.47276 * 29.99885 * 3 2 1 6 6 H 1.48501 * 109.47402 * 149.99579 * 3 2 1 7 7 C 1.38812 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 197.01972 * 7 2 1 9 9 N 1.36936 * 119.99955 * 17.02676 * 7 2 1 10 10 C 1.47084 * 120.87575 * 206.58542 * 9 7 2 11 11 C 1.53249 * 108.51809 * 231.16038 * 10 9 7 12 12 N 1.46904 * 109.33573 * 306.17188 * 11 10 9 13 13 C 1.46905 * 110.99793 * 187.25404 * 12 11 10 14 14 C 1.52994 * 109.47256 * 169.99991 * 13 12 11 15 15 N 1.46500 * 109.47159 * 179.97438 * 14 13 12 16 16 C 1.34779 * 120.00093 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99532 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00323 * 179.97438 * 16 15 14 19 19 C 1.52994 * 109.47389 * 180.02562 * 18 16 15 20 20 N 1.46905 * 109.47256 * 180.02562 * 19 18 16 21 21 C 1.46847 * 110.99909 * 169.99886 * 20 19 18 22 22 C 1.53037 * 109.51889 * 185.83857 * 21 20 19 23 23 C 1.53118 * 109.27983 * 300.82059 * 22 21 20 24 24 C 1.53112 * 109.15897 * 57.65704 * 23 22 21 25 25 C 1.46847 * 110.99752 * 294.21045 * 20 19 18 26 26 C 1.46899 * 111.27293 * 63.10418 * 12 11 10 27 27 C 1.47071 * 120.88462 * 26.55823 * 9 7 2 28 28 H 0.97002 * 119.99508 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.62905 * 111.45256 * 10 9 7 30 30 H 1.08994 * 109.79029 * 350.95871 * 10 9 7 31 31 H 1.08999 * 109.49173 * 186.21592 * 11 10 9 32 32 H 1.09002 * 109.49114 * 66.12667 * 11 10 9 33 33 H 1.09002 * 109.46745 * 49.99629 * 13 12 11 34 34 H 1.08996 * 109.46917 * 290.00044 * 13 12 11 35 35 H 1.08996 * 109.47117 * 59.99573 * 14 13 12 36 36 H 1.09006 * 109.47040 * 299.99920 * 14 13 12 37 37 H 0.96992 * 120.00063 * 359.97438 * 15 14 13 38 38 H 1.09002 * 109.46663 * 59.99809 * 18 16 15 39 39 H 1.08996 * 109.46865 * 300.00306 * 18 16 15 40 40 H 1.09000 * 109.47027 * 60.00092 * 19 18 16 41 41 H 1.09006 * 109.47040 * 299.99938 * 19 18 16 42 42 H 1.09003 * 109.46330 * 65.82322 * 21 20 19 43 43 H 1.08999 * 109.46123 * 305.85591 * 21 20 19 44 44 H 1.09008 * 109.49972 * 180.87784 * 22 21 20 45 45 H 1.09000 * 109.50579 * 60.76711 * 22 21 20 46 46 H 1.09003 * 109.52191 * 177.56250 * 23 22 21 47 47 H 1.08999 * 109.52145 * 297.74908 * 23 22 21 48 48 H 1.08995 * 109.50536 * 62.28697 * 24 23 22 49 49 H 1.09003 * 109.50468 * 182.40600 * 24 23 22 50 50 H 1.08999 * 109.46017 * 294.17238 * 25 20 19 51 51 H 1.09001 * 109.46404 * 54.14557 * 25 20 19 52 52 H 1.09003 * 109.48799 * 56.85125 * 26 12 11 53 53 H 1.08994 * 109.49211 * 176.93145 * 26 12 11 54 54 H 1.09002 * 109.62902 * 248.54899 * 27 9 7 55 55 H 1.09004 * 109.62778 * 9.12723 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0547 -1.2226 0.2743 9 7 1.3704 -2.3622 -0.3462 10 6 1.8307 -3.6609 0.1685 11 6 2.0022 -4.6201 -1.0144 12 7 0.7546 -4.6655 -1.7886 13 6 0.8181 -5.7006 -2.8291 14 6 -0.5694 -5.8903 -3.4452 15 7 -0.5059 -6.9221 -4.4833 16 6 -1.6174 -7.2599 -5.1665 17 8 -2.6701 -6.7093 -4.9223 18 6 -1.5520 -8.3209 -6.2347 19 6 -2.9396 -8.5106 -6.8507 20 7 -2.8759 -9.5453 -7.8916 21 6 -4.2220 -9.9240 -8.3402 22 6 -4.1243 -11.1006 -9.3139 23 6 -3.2620 -10.6947 -10.5124 24 6 -1.8816 -10.2588 -10.0135 25 6 -2.0441 -9.1066 -9.0195 26 6 0.4400 -3.3535 -2.3697 27 6 0.2046 -2.3425 -1.2425 28 1 -0.4849 0.8401 -0.0004 29 1 1.0918 -4.0628 0.8616 30 1 2.7847 -3.5376 0.6810 31 1 2.2361 -5.6177 -0.6427 32 1 2.8136 -4.2695 -1.6523 33 1 1.1511 -6.6398 -2.3874 34 1 1.5209 -5.3942 -3.6039 35 1 -0.9023 -4.9510 -3.8869 36 1 -1.2722 -6.1966 -2.6704 37 1 0.3361 -7.3621 -4.6788 38 1 -1.2182 -9.2602 -5.7938 39 1 -0.8498 -8.0134 -7.0096 40 1 -3.2729 -7.5712 -7.2917 41 1 -3.6421 -8.8179 -6.0760 42 1 -4.6900 -9.0763 -8.8406 43 1 -4.8235 -10.2144 -7.4788 44 1 -5.1223 -11.3714 -9.6587 45 1 -3.6690 -11.9532 -8.8101 46 1 -3.1540 -11.5437 -11.1875 47 1 -3.7370 -9.8672 -11.0393 48 1 -1.3910 -11.0981 -9.5207 49 1 -1.2771 -9.9281 -10.8581 50 1 -2.5224 -8.2628 -9.5167 51 1 -1.0640 -8.8034 -8.6516 52 1 1.2732 -3.0207 -2.9887 53 1 -0.4589 -3.4326 -2.9810 54 1 -0.6907 -2.6177 -0.6849 55 1 0.0842 -1.3448 -1.6647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490517590.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:48 Heat of formation + Delta-G solvation = -35.761165 kcal Electronic energy + Delta-G solvation = -29227.433589 eV Core-core repulsion = 25298.357934 eV Total energy + Delta-G solvation = -3929.075655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.95948 -39.90528 -39.58861 -36.87685 -35.43016 -35.15614 -33.32386 -31.95658 -31.66265 -31.43588 -29.98772 -27.66572 -25.88163 -24.90809 -24.27801 -23.98183 -23.07458 -22.45896 -21.21786 -20.80645 -20.60521 -18.76018 -18.26589 -17.33267 -17.00664 -16.78186 -16.65779 -16.21801 -16.00520 -15.85154 -15.38455 -15.34776 -15.28167 -15.17332 -15.03522 -14.83125 -14.51220 -14.39726 -14.19846 -13.84741 -13.57636 -13.21959 -13.08249 -13.01765 -12.84039 -12.74299 -12.63266 -12.53743 -12.22839 -12.11859 -12.11257 -12.04379 -11.86250 -11.57417 -11.56668 -11.43579 -11.27348 -11.17259 -10.95198 -10.60188 -10.10517 -9.34832 -9.30812 -8.69941 -7.88437 -5.33584 1.46012 1.47084 1.56454 1.63330 2.02424 2.50065 2.88562 3.15660 3.27379 3.66809 3.76873 3.84150 3.88151 3.95620 4.01304 4.07081 4.12898 4.21226 4.29625 4.34139 4.34972 4.46135 4.48791 4.52304 4.54428 4.63944 4.67022 4.68514 4.70557 4.79648 4.82904 4.87796 4.93074 4.96288 4.98784 5.01195 5.04221 5.08894 5.11102 5.20020 5.25695 5.30509 5.35988 5.40710 5.49806 5.60313 5.66192 6.04935 6.13039 6.13300 6.22904 6.36127 6.55927 7.11834 7.26779 7.82956 8.37228 9.18460 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.001557 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.016569 B =17982.466769 C =18282.556376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.614 5.614 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.544 5.544 13 C 0.055 3.945 14 C 0.129 3.871 15 N -0.713 5.713 16 C 0.509 3.491 17 O -0.592 6.592 18 C -0.122 4.122 19 C 0.074 3.926 20 N -0.538 5.538 21 C 0.051 3.949 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.114 4.114 25 C 0.045 3.955 26 C 0.050 3.950 27 C 0.185 3.815 28 H 0.250 0.750 29 H 0.014 0.986 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.419 0.581 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.023 0.977 51 H 0.088 0.912 52 H 0.023 0.977 53 H 0.074 0.926 54 H -0.005 1.005 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 -25.811 -21.054 33.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.269 5.269 13 C -0.073 4.073 14 C 0.004 3.996 15 N -0.367 5.367 16 C 0.297 3.703 17 O -0.472 6.472 18 C -0.161 4.161 19 C -0.055 4.055 20 N -0.263 5.263 21 C -0.077 4.077 22 C -0.150 4.150 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.082 4.082 26 C -0.079 4.079 27 C 0.058 3.942 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.047 0.953 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.256 0.744 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.042 0.958 51 H 0.106 0.894 52 H 0.041 0.959 53 H 0.092 0.908 54 H 0.013 0.987 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.539 -25.824 -20.321 32.896 hybrid contribution 0.392 2.286 -0.519 2.377 sum -1.148 -23.538 -20.840 31.459 Atomic orbital electron populations 1.70208 1.06778 1.25844 1.55554 1.25832 0.96056 1.01636 1.01346 0.85223 0.78108 0.79347 0.77515 1.21262 1.22261 1.19067 1.19579 0.92991 0.85946 1.40873 0.91153 1.44405 1.34092 1.02332 1.52986 1.21176 0.97581 0.85485 0.94258 1.22475 0.89057 1.00287 0.95244 1.61753 1.35079 1.05240 1.24870 1.22189 0.94984 0.96532 0.93592 1.21091 0.97829 0.90757 0.89923 1.45778 1.12427 1.40608 1.37852 1.21262 0.82917 0.83548 0.82595 1.90726 1.31481 1.56292 1.68743 1.21573 0.99435 0.98406 0.96735 1.21679 0.96642 0.92799 0.94346 1.61973 1.13460 1.39430 1.11398 1.22144 0.89234 0.97523 0.98774 1.21568 1.00582 0.97372 0.95520 1.21608 0.95795 1.01266 0.97463 1.21579 0.97370 0.98164 0.98054 1.22284 0.98068 0.96591 0.91297 1.22599 0.99239 0.89504 0.96544 1.20599 0.87889 0.96329 0.89335 0.94133 0.96755 0.91782 0.88039 0.95270 0.87844 0.93485 0.93490 0.92460 0.74390 0.85715 0.86616 0.95985 0.91316 0.95709 0.90841 0.90693 0.91106 0.90759 0.92745 0.90936 0.90494 0.95844 0.89376 0.95858 0.90811 0.98685 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 11.15 21.65 0.24 -56.81 16 2 C -0.05 -3.05 4.93 84.86 0.42 -2.63 16 3 Si 0.97 45.46 29.59 68.60 2.03 47.49 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.26 -14.75 9.63 84.03 0.81 -13.94 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -31.74 3.04 -698.12 -2.12 -33.86 16 10 C 0.14 5.86 6.69 86.35 0.58 6.44 16 11 C 0.06 1.88 5.62 86.39 0.49 2.36 16 12 N -0.54 -17.93 4.63 -895.23 -4.14 -22.08 16 13 C 0.06 1.26 5.08 86.30 0.44 1.70 16 14 C 0.13 3.22 5.60 86.38 0.48 3.70 16 15 N -0.71 -12.88 5.56 -463.07 -2.57 -15.45 16 16 C 0.51 11.07 7.83 87.66 0.69 11.76 16 17 O -0.59 -19.33 15.98 -3.04 -0.05 -19.38 16 18 C -0.12 -1.63 5.63 29.84 0.17 -1.46 16 19 C 0.07 1.29 4.25 86.30 0.37 1.66 16 20 N -0.54 -7.75 4.66 -896.35 -4.17 -11.92 16 21 C 0.05 0.71 5.46 86.33 0.47 1.18 16 22 C -0.11 -1.17 6.09 30.65 0.19 -0.99 16 23 C -0.12 -1.16 6.00 30.67 0.18 -0.97 16 24 C -0.11 -1.05 6.09 30.64 0.19 -0.87 16 25 C 0.05 0.54 5.29 86.33 0.46 0.99 16 26 C 0.05 1.98 5.46 86.38 0.47 2.45 16 27 C 0.18 9.37 5.42 86.35 0.47 9.84 16 28 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 31 H 0.10 2.52 7.99 -2.39 -0.02 2.50 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.83 7.97 -2.39 -0.02 1.81 16 34 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 35 H 0.05 1.41 6.40 -2.39 -0.02 1.39 16 36 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.42 4.22 8.47 -92.71 -0.79 3.43 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 1.05 6.43 -2.39 -0.02 1.03 16 40 H 0.02 0.47 8.08 -2.39 -0.02 0.45 16 41 H 0.07 1.40 7.94 -2.38 -0.02 1.38 16 42 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.07 1.04 8.01 -2.39 -0.02 1.02 16 44 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 51 H 0.09 0.82 6.21 -2.39 -0.01 0.81 16 52 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.07 2.72 6.16 -2.39 -0.01 2.71 16 54 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 55 H 0.05 3.14 6.12 -2.39 -0.01 3.12 16 Total: -1.00 -73.64 417.06 -3.87 -77.51 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.06 Total: 13.28 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 6.86 Total: 21.22 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -12.77 Total: -140.12 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.64 -3.87 -77.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490517590.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.750 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds