Wall clock time and date at job start Tue Mar 31 2020 22:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99777 * 2 1 4 4 C 1.53000 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.50701 * 110.43264 * 304.53607 * 4 3 2 6 6 O 1.21280 * 119.99920 * 121.85278 * 5 4 3 7 7 N 1.34771 * 120.00219 * 301.84503 * 5 4 3 8 8 C 1.46924 * 120.63186 * 354.88702 * 7 5 4 9 9 C 1.53191 * 108.77988 * 233.60803 * 8 7 5 10 10 C 1.53041 * 109.31048 * 305.36832 * 9 8 7 11 11 C 1.53038 * 109.54206 * 61.36087 * 10 9 8 12 12 H 1.08998 * 109.49517 * 58.62120 * 11 10 9 13 13 C 1.52998 * 109.49598 * 178.68305 * 11 10 9 14 14 N 1.46497 * 109.47372 * 294.93114 * 13 11 10 15 15 C 1.46494 * 120.00250 * 270.00260 * 14 13 11 16 16 C 1.36939 * 119.99789 * 90.00362 * 14 13 11 17 17 H 1.08000 * 119.99834 * 340.50865 * 16 14 13 18 18 C 1.38809 * 120.00255 * 160.50264 * 16 14 13 19 19 N 1.31623 * 120.00100 * 346.71406 * 18 16 14 20 20 Si 1.86806 * 119.99931 * 166.43442 * 18 16 14 21 21 H 1.48500 * 109.46923 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46484 * 120.00239 * 20 18 16 23 23 H 1.48498 * 109.47043 * 239.99992 * 20 18 16 24 24 C 1.46931 * 120.60635 * 174.90606 * 7 5 4 25 25 C 1.54885 * 110.48740 * 67.08220 * 4 3 2 26 26 C 1.55240 * 102.58963 * 156.67556 * 25 4 3 27 27 C 1.54266 * 104.22992 * 322.08222 * 26 25 4 28 28 C 1.53876 * 106.60024 * 23.60980 * 27 26 25 29 29 H 1.08999 * 109.47408 * 59.99807 * 1 2 3 30 30 H 1.09004 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47079 * 299.99578 * 1 2 3 32 32 H 1.09000 * 109.47217 * 59.99987 * 3 2 1 33 33 H 1.08998 * 109.47114 * 300.00282 * 3 2 1 34 34 H 1.09001 * 109.59243 * 113.81872 * 8 7 5 35 35 H 1.09002 * 109.58958 * 353.39791 * 8 7 5 36 36 H 1.08998 * 109.50074 * 185.41021 * 9 8 7 37 37 H 1.09001 * 109.49783 * 65.31486 * 9 8 7 38 38 H 1.09002 * 109.45448 * 301.33765 * 10 9 8 39 39 H 1.09004 * 109.46022 * 181.38688 * 10 9 8 40 40 H 1.09004 * 109.46851 * 174.93597 * 13 11 10 41 41 H 1.08994 * 109.47272 * 54.94148 * 13 11 10 42 42 H 1.08997 * 109.47435 * 267.68560 * 15 14 13 43 43 H 1.08994 * 109.47530 * 27.68654 * 15 14 13 44 44 H 1.09005 * 109.46794 * 147.68858 * 15 14 13 45 45 H 0.96990 * 120.00097 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.61619 * 6.62335 * 24 7 5 47 47 H 1.08993 * 109.56530 * 246.19536 * 24 7 5 48 48 H 1.09002 * 110.75250 * 275.06583 * 25 4 3 49 49 H 1.08999 * 110.75784 * 38.43456 * 25 4 3 50 50 H 1.08997 * 110.46810 * 203.39083 * 26 25 4 51 51 H 1.09002 * 110.58255 * 80.82699 * 26 25 4 52 52 H 1.09005 * 110.03025 * 264.32899 * 27 26 25 53 53 H 1.08998 * 110.03206 * 142.89497 * 27 26 25 54 54 H 1.09001 * 110.03327 * 240.71547 * 28 27 26 55 55 H 1.09003 * 110.07463 * 119.30658 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9971 0.3449 1.1623 6 8 4.6511 -0.6572 0.9648 7 7 3.6835 0.7074 2.4219 8 6 2.9894 1.9753 2.6851 9 6 3.7933 2.7727 3.7169 10 6 4.0183 1.9093 4.9603 11 6 4.8216 0.6635 4.5800 12 1 5.7749 0.9640 4.1454 13 6 5.0741 -0.1824 5.8296 14 7 5.9304 0.5604 6.7575 15 6 7.3872 0.4301 6.6739 16 6 5.3692 1.3767 7.7030 17 1 4.3539 1.7247 7.5820 18 6 6.1050 1.7567 8.8169 19 7 7.2309 1.1385 9.1042 20 14 5.5012 3.1508 9.9040 21 1 4.2226 3.6803 9.3653 22 1 5.2850 2.6447 11.2832 23 1 6.5157 4.2349 9.9278 24 6 4.0299 -0.1580 3.5577 25 6 4.0307 0.5789 -1.3373 26 6 5.4967 1.0835 -1.4149 27 6 5.4347 2.5175 -0.8495 28 6 4.1876 2.5819 0.0497 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 1.9926 1.7719 3.0766 35 1 2.9113 2.5479 1.7609 36 1 3.2414 3.6712 3.9928 37 1 4.7562 3.0534 3.2899 38 1 3.0551 1.6086 5.3726 39 1 4.5689 2.4829 5.7060 40 1 5.5670 -1.1122 5.5454 41 1 4.1239 -0.4083 6.3135 42 1 7.7202 -0.3620 7.3444 43 1 7.6719 0.1839 5.6510 44 1 7.8534 1.3717 6.9641 45 1 7.7452 1.4043 9.8824 46 1 4.6385 -0.9926 3.2095 47 1 3.1181 -0.5359 4.0200 48 1 3.9955 -0.5100 -1.3044 49 1 3.4459 0.9603 -2.1744 50 1 5.8414 1.0956 -2.4488 51 1 6.1493 0.4603 -0.8034 52 1 5.3452 3.2364 -1.6639 53 1 6.3292 2.7265 -0.2628 54 1 3.4930 3.3321 -0.3283 55 1 4.4762 2.8226 1.0729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490766168.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:35 Heat of formation + Delta-G solvation = -79.208890 kcal Electronic energy + Delta-G solvation = -32293.966313 eV Core-core repulsion = 28330.713872 eV Total energy + Delta-G solvation = -3963.252441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.03608 -39.54109 -38.57690 -37.68709 -37.21257 -34.48776 -33.01395 -32.36529 -31.37857 -29.66566 -28.04424 -27.63012 -27.29692 -26.59197 -25.20078 -23.94288 -23.12566 -22.17706 -21.43994 -20.78884 -19.62342 -18.61618 -18.04798 -17.37834 -17.05526 -16.89798 -16.63327 -16.41585 -15.97782 -15.84725 -15.62960 -15.37234 -14.99516 -14.89257 -14.78219 -14.48332 -14.25224 -14.09052 -13.87201 -13.74064 -13.37678 -13.17542 -12.90268 -12.77043 -12.54303 -12.49254 -12.42708 -12.36928 -12.22272 -12.11844 -12.00700 -11.93020 -11.91348 -11.85337 -11.67686 -11.65019 -11.37118 -11.27728 -11.16050 -10.72105 -10.58305 -10.37690 -9.57163 -8.76312 -7.78763 -5.23006 1.47853 1.48878 1.59094 1.69693 2.02337 2.54152 2.76196 3.34463 3.35491 3.58183 3.62850 3.70587 3.83980 3.97987 3.98489 4.08769 4.22782 4.27228 4.28860 4.40297 4.45078 4.50485 4.52499 4.53966 4.55996 4.60261 4.61639 4.70673 4.71491 4.77240 4.80677 4.85279 4.87129 4.89859 4.90972 4.93479 4.99698 5.06229 5.08427 5.20985 5.24379 5.26736 5.33763 5.37072 5.48772 5.57800 5.58349 5.63554 5.64936 5.73256 6.24406 6.35014 6.51431 7.17889 7.24656 7.90221 8.35899 9.26928 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002989 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.626372 B = 9364.273182 C = 9701.175501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.065 3.935 4 C -0.080 4.080 5 C 0.531 3.469 6 O -0.586 6.586 7 N -0.605 5.605 8 C 0.096 3.904 9 C -0.128 4.128 10 C -0.106 4.106 11 C -0.100 4.100 12 H 0.040 0.960 13 C 0.156 3.844 14 N -0.615 5.615 15 C 0.181 3.819 16 C -0.242 4.242 17 H 0.084 0.916 18 C -0.064 4.064 19 N -0.947 5.947 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.297 1.297 23 H -0.296 1.296 24 C 0.127 3.873 25 C -0.091 4.091 26 C -0.128 4.128 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.050 0.950 42 H -0.004 1.004 43 H 0.015 0.985 44 H 0.025 0.975 45 H 0.244 0.756 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.036 0.964 52 H 0.094 0.906 53 H 0.053 0.947 54 H 0.115 0.885 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.881 6.606 -23.760 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C -0.011 4.011 4 C -0.084 4.084 5 C 0.320 3.680 6 O -0.466 6.466 7 N -0.337 5.337 8 C -0.025 4.025 9 C -0.166 4.166 10 C -0.144 4.144 11 C -0.121 4.121 12 H 0.059 0.941 13 C 0.029 3.971 14 N -0.338 5.338 15 C 0.036 3.964 16 C -0.372 4.372 17 H 0.101 0.899 18 C -0.258 4.258 19 N -0.595 5.595 20 Si 0.795 3.205 21 H -0.183 1.183 22 H -0.225 1.225 23 H -0.223 1.223 24 C 0.003 3.997 25 C -0.129 4.129 26 C -0.165 4.165 27 C -0.159 4.159 28 C -0.155 4.155 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.015 0.985 43 H 0.033 0.967 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.116 0.884 50 H 0.100 0.900 51 H 0.055 0.945 52 H 0.113 0.887 53 H 0.072 0.928 54 H 0.133 0.867 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.342 5.944 -23.729 28.357 hybrid contribution 0.414 0.169 1.383 1.453 sum -13.929 6.113 -22.346 27.032 Atomic orbital electron populations 1.22885 0.79386 1.03379 1.01181 1.87947 1.21479 1.28479 1.95633 1.22988 0.89659 0.85316 1.03173 1.21721 0.95807 0.96955 0.93871 1.20813 0.77926 0.85001 0.84225 1.90621 1.41337 1.29412 1.85266 1.48083 1.58174 1.22010 1.05428 1.22360 0.95677 0.83593 1.00863 1.21929 1.00584 0.98857 0.95258 1.21483 0.99342 0.95841 0.97723 1.21878 0.97600 0.97151 0.95517 0.94125 1.20813 0.94239 0.92449 0.89559 1.44111 1.01581 1.51949 1.36169 1.20469 0.83692 0.98557 0.93674 1.19650 0.98927 1.20505 0.98132 0.89858 1.25771 0.98544 1.02529 0.98942 1.70285 1.17874 1.43026 1.28363 0.85202 0.77965 0.79101 0.78249 1.18308 1.22477 1.22280 1.21421 0.99279 0.92948 0.86040 1.22381 0.95992 0.99956 0.94550 1.22422 0.96522 0.96300 1.01304 1.22139 0.97264 0.96954 0.99520 1.22465 0.98113 0.93450 1.01446 0.92207 0.89733 0.93144 0.90694 0.89349 0.90068 0.86534 0.88487 0.92682 0.92129 0.92303 0.94683 0.93127 0.98526 0.96663 0.95589 0.94624 0.91778 0.90757 0.93193 0.88383 0.89959 0.94516 0.88748 0.92800 0.86668 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.53 10.09 -148.98 -1.50 -10.03 16 3 C 0.06 0.96 4.38 71.98 0.31 1.28 16 4 C -0.08 -1.59 0.35 -51.85 -0.02 -1.60 16 5 C 0.53 15.57 5.84 87.66 0.51 16.08 16 6 O -0.59 -22.67 14.51 -3.03 -0.04 -22.71 16 7 N -0.61 -16.35 2.96 -818.91 -2.43 -18.78 16 8 C 0.10 1.85 3.95 86.36 0.34 2.19 16 9 C -0.13 -2.91 5.95 30.67 0.18 -2.72 16 10 C -0.11 -3.34 4.44 30.62 0.14 -3.21 16 11 C -0.10 -3.50 2.54 -10.72 -0.03 -3.52 16 12 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 13 C 0.16 6.48 5.16 86.38 0.45 6.92 16 14 N -0.62 -31.17 2.81 -726.97 -2.04 -33.21 16 15 C 0.18 9.50 8.97 127.77 1.15 10.64 16 16 C -0.24 -12.95 8.12 84.03 0.68 -12.26 16 17 H 0.08 4.20 6.84 -2.91 -0.02 4.18 16 18 C -0.06 -3.59 5.09 84.86 0.43 -3.16 16 19 N -0.95 -57.11 10.54 21.65 0.23 -56.88 16 20 Si 0.97 44.73 29.58 68.60 2.03 46.76 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 24 C 0.13 3.99 5.73 86.36 0.49 4.48 16 25 C -0.09 -1.86 5.40 32.01 0.17 -1.69 16 26 C -0.13 -2.58 6.53 31.79 0.21 -2.38 16 27 C -0.12 -1.92 6.80 31.32 0.21 -1.71 16 28 C -0.12 -1.71 4.57 31.32 0.14 -1.56 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.08 0.89 5.14 -2.39 -0.01 0.88 16 33 H 0.09 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 35 H 0.12 1.59 3.13 -2.39 -0.01 1.58 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.36 7.70 -2.39 -0.02 1.34 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.28 6.00 -2.39 -0.01 2.26 16 40 H 0.03 1.44 8.07 -2.38 -0.02 1.42 16 41 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 42 H 0.00 -0.20 7.59 -2.39 -0.02 -0.22 16 43 H 0.01 0.70 8.05 -2.39 -0.02 0.68 16 44 H 0.03 1.45 6.91 -2.38 -0.02 1.43 16 45 H 0.24 14.37 8.31 -92.72 -0.77 13.60 16 46 H 0.06 2.32 7.00 -2.39 -0.02 2.30 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.05 1.36 7.42 -2.39 -0.02 1.34 16 49 H 0.10 1.42 8.01 -2.39 -0.02 1.40 16 50 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.04 1.00 7.64 -2.39 -0.02 0.98 16 52 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 53 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.12 0.84 7.84 -2.39 -0.02 0.82 16 55 H 0.07 1.21 5.40 -2.39 -0.01 1.20 16 Total: -1.00 -73.98 403.35 3.72 -70.26 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.85 Total: 15.23 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.63 Total: 9.38 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.24 Total: -108.88 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.55 Total: -32.75 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.98 3.72 -70.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490766168.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.950 kcal (2) G-P(sol) polarization free energy of solvation -73.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds