Wall clock time and date at job start Tue Mar 31 2020 22:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00210 * 2 1 4 4 C 1.53000 * 109.47052 * 179.97438 * 3 2 1 5 5 C 1.50693 * 110.05748 * 53.79705 * 4 3 2 6 6 O 1.21283 * 120.00084 * 239.28689 * 5 4 3 7 7 N 1.34779 * 120.00118 * 59.28754 * 5 4 3 8 8 C 1.46925 * 120.63102 * 5.20740 * 7 5 4 9 9 C 1.53620 * 108.54684 * 126.36861 * 8 7 5 10 10 C 1.53039 * 109.24317 * 54.85407 * 9 8 7 11 11 C 1.53036 * 109.53870 * 298.51050 * 10 9 8 12 12 H 1.09001 * 109.50469 * 301.41550 * 11 10 9 13 13 C 1.52996 * 109.50103 * 181.31423 * 11 10 9 14 14 N 1.46510 * 109.46778 * 65.16224 * 13 11 10 15 15 C 1.46492 * 120.00165 * 270.00290 * 14 13 11 16 16 C 1.36935 * 119.99365 * 90.00591 * 14 13 11 17 17 H 1.07997 * 120.00759 * 23.98277 * 16 14 13 18 18 C 1.38818 * 119.99296 * 203.98962 * 16 14 13 19 19 N 1.31611 * 120.00343 * 9.51804 * 18 16 14 20 20 Si 1.86806 * 119.99667 * 189.52499 * 18 16 14 21 21 H 1.48500 * 109.47207 * 59.99756 * 20 18 16 22 22 H 1.48504 * 109.46763 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47068 * 299.99737 * 20 18 16 24 24 C 1.46927 * 120.63097 * 185.48299 * 7 5 4 25 25 C 1.54261 * 110.03237 * 292.37824 * 4 3 2 26 26 C 1.54894 * 104.19747 * 217.10737 * 25 4 3 27 27 C 1.54893 * 102.74736 * 37.94287 * 26 25 4 28 28 C 1.53878 * 110.02654 * 175.21303 * 4 3 2 29 29 H 1.09001 * 109.46703 * 300.00354 * 1 2 3 30 30 H 1.08993 * 109.47082 * 59.99939 * 1 2 3 31 31 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47103 * 59.99936 * 3 2 1 33 33 H 1.09004 * 109.46553 * 300.00080 * 3 2 1 34 34 H 1.09007 * 109.58636 * 246.20262 * 8 7 5 35 35 H 1.09000 * 109.58588 * 6.62333 * 8 7 5 36 36 H 1.09005 * 109.63069 * 294.86374 * 9 8 7 37 37 H 1.08998 * 109.45892 * 174.74312 * 9 8 7 38 38 H 1.09004 * 109.45733 * 178.49153 * 10 9 8 39 39 H 1.08997 * 109.45942 * 58.53219 * 10 9 8 40 40 H 1.08994 * 109.47650 * 185.16646 * 13 11 10 41 41 H 1.09004 * 109.47576 * 305.17054 * 13 11 10 42 42 H 1.08995 * 109.47626 * 93.71511 * 15 14 13 43 43 H 1.08996 * 109.47112 * 213.72034 * 15 14 13 44 44 H 1.09003 * 109.47412 * 333.71618 * 15 14 13 45 45 H 0.96999 * 120.00462 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.59070 * 353.37166 * 24 7 5 47 47 H 1.09000 * 109.58751 * 113.65592 * 24 7 5 48 48 H 1.08999 * 110.49021 * 335.78658 * 25 4 3 49 49 H 1.08997 * 110.48875 * 98.42947 * 25 4 3 50 50 H 1.08998 * 110.75573 * 279.63329 * 26 25 4 51 51 H 1.08995 * 110.75921 * 156.25613 * 26 25 4 52 52 H 1.08995 * 110.48633 * 203.38144 * 27 26 25 53 53 H 1.08997 * 110.48731 * 80.73103 * 27 26 25 54 54 H 1.09002 * 110.02651 * 238.56517 * 28 4 3 55 55 H 1.08994 * 110.03559 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9851 0.3101 -1.1412 6 8 4.6191 -0.6996 -0.9187 7 7 3.6827 0.6500 -2.4099 8 6 3.0156 1.9254 -2.7045 9 6 3.8456 2.6800 -3.7541 10 6 4.0507 1.7816 -4.9760 11 6 4.8225 0.5259 -4.5641 12 1 5.7821 0.8131 -4.1344 13 6 5.0556 -0.3561 -5.7923 14 7 5.9333 0.3419 -6.7352 15 6 5.3582 1.2060 -7.7689 16 6 7.2911 0.1864 -6.6501 17 1 7.7056 -0.6973 -6.1882 18 6 8.1348 1.1651 -7.1576 19 7 7.6416 2.3209 -7.5488 20 14 9.9702 0.8414 -7.2852 21 1 10.2061 -0.3290 -8.1683 22 1 10.6448 2.0352 -7.8554 23 1 10.5184 0.5605 -5.9340 24 6 4.0085 -0.2507 -3.5241 25 6 4.0181 0.5931 1.3411 26 6 5.3371 1.3493 1.6371 27 6 5.0236 2.7863 1.1514 28 6 4.1747 2.5792 -0.1200 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 2.0158 1.7335 -3.0942 35 1 2.9469 2.5207 -1.7940 36 1 4.8145 2.9470 -3.3321 37 1 3.3170 3.5852 -4.0528 38 1 4.6165 2.3232 -5.7340 39 1 3.0810 1.4948 -5.3827 40 1 5.5234 -1.2913 -5.4847 41 1 4.1010 -0.5685 -6.2737 42 1 5.3281 2.2340 -7.4079 43 1 5.9720 1.1546 -8.6682 44 1 4.3466 0.8724 -8.0000 45 1 8.2311 3.0046 -7.9038 46 1 4.5953 -1.0917 -3.1547 47 1 3.0882 -0.6186 -3.9777 48 1 3.2862 0.7809 2.1266 49 1 4.2056 -0.4760 1.2409 50 1 6.1635 0.9214 1.0695 51 1 5.5556 1.3416 2.7049 52 1 5.9448 3.3177 0.9126 53 1 4.4539 3.3283 1.9062 54 1 4.8102 2.6233 -1.0045 55 1 3.3984 3.3419 -0.1794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490766169.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:40 Heat of formation + Delta-G solvation = -81.169991 kcal Electronic energy + Delta-G solvation = -32382.872760 eV Core-core repulsion = 28419.535279 eV Total energy + Delta-G solvation = -3963.337481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05067 -39.55581 -38.58668 -37.73629 -37.20163 -34.49901 -32.96756 -32.41292 -31.34860 -29.72213 -28.12919 -27.66642 -27.18168 -26.58028 -25.21945 -23.92385 -22.97524 -22.11249 -21.62247 -20.85291 -19.55399 -18.70183 -18.20356 -17.38113 -16.92239 -16.90473 -16.58381 -16.45604 -16.15104 -15.69428 -15.61143 -15.59018 -15.12757 -14.88083 -14.58554 -14.51679 -14.27136 -14.17829 -13.80217 -13.72283 -13.31106 -13.17989 -12.91119 -12.74106 -12.67454 -12.51756 -12.42966 -12.26218 -12.22151 -12.12477 -12.06869 -11.97202 -11.87572 -11.83061 -11.73761 -11.55798 -11.47967 -11.37281 -11.17144 -10.75630 -10.62101 -10.39487 -9.58502 -8.71031 -7.82941 -5.30195 1.43006 1.44211 1.50777 1.67918 2.02139 2.49585 2.77126 3.30487 3.30725 3.58653 3.64475 3.71206 3.81302 3.98270 4.00099 4.06973 4.21349 4.26929 4.28969 4.39720 4.44696 4.46636 4.51236 4.54963 4.56442 4.60352 4.61264 4.67072 4.70143 4.76895 4.83349 4.86849 4.87943 4.89730 4.90127 4.93361 4.97917 5.04790 5.13095 5.17815 5.23710 5.28296 5.33668 5.37394 5.44657 5.50400 5.58099 5.62113 5.65350 5.84677 6.24546 6.34946 6.50264 7.17805 7.22693 7.89966 8.32412 9.19596 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003273 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.957813 B = 8551.648278 C = 9323.569264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.067 3.933 4 C -0.077 4.077 5 C 0.527 3.473 6 O -0.591 6.591 7 N -0.606 5.606 8 C 0.099 3.901 9 C -0.127 4.127 10 C -0.105 4.105 11 C -0.102 4.102 12 H 0.024 0.976 13 C 0.156 3.844 14 N -0.613 5.613 15 C 0.181 3.819 16 C -0.265 4.265 17 H 0.059 0.941 18 C -0.045 4.045 19 N -0.931 5.931 20 Si 0.961 3.039 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.127 3.873 25 C -0.099 4.099 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.116 4.116 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.028 0.972 45 H 0.248 0.752 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.050 0.950 50 H 0.036 0.964 51 H 0.086 0.914 52 H 0.067 0.933 53 H 0.098 0.902 54 H 0.055 0.945 55 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 4.724 18.057 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.009 4.009 4 C -0.081 4.081 5 C 0.316 3.684 6 O -0.471 6.471 7 N -0.337 5.337 8 C -0.022 4.022 9 C -0.165 4.165 10 C -0.142 4.142 11 C -0.124 4.124 12 H 0.043 0.957 13 C 0.029 3.971 14 N -0.336 5.336 15 C 0.037 3.963 16 C -0.395 4.395 17 H 0.077 0.923 18 C -0.241 4.241 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.003 3.997 25 C -0.136 4.136 26 C -0.166 4.166 27 C -0.154 4.154 28 C -0.153 4.153 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.112 0.888 49 H 0.069 0.931 50 H 0.055 0.945 51 H 0.105 0.895 52 H 0.086 0.914 53 H 0.117 0.883 54 H 0.073 0.927 55 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.859 4.161 18.053 25.733 hybrid contribution 1.583 -0.253 -0.610 1.715 sum -16.276 3.908 17.443 24.175 Atomic orbital electron populations 1.22891 0.79310 1.03405 1.01234 1.87957 1.21560 1.28408 1.95634 1.23011 0.89374 0.85332 1.03168 1.21531 0.96291 0.96315 0.93927 1.20947 0.77680 0.85453 0.84277 1.90615 1.42187 1.29670 1.84656 1.48095 1.59245 1.20817 1.05534 1.22432 0.95970 0.83397 1.00416 1.21956 0.99961 0.99022 0.95575 1.21471 0.99507 0.95452 0.97781 1.21915 0.96900 0.97449 0.96153 0.95701 1.20926 0.93664 0.93362 0.89115 1.44060 1.02123 1.54660 1.32722 1.20598 0.92750 0.92843 0.90144 1.19410 0.83361 1.01173 1.35578 0.92346 1.25681 1.01522 0.95014 1.01875 1.70171 1.34597 1.05051 1.47984 0.85444 0.81077 0.76813 0.77704 1.20478 1.21523 1.20969 1.21471 0.99362 0.92398 0.86429 1.22269 0.97558 0.99652 0.94163 1.22522 0.96569 0.95923 1.01586 1.22386 0.99965 0.96296 0.96772 1.22386 1.00171 0.93339 0.99433 0.92257 0.92981 0.89700 0.89320 0.90632 0.89346 0.86802 0.93938 0.88404 0.93164 0.90990 0.94832 0.91781 0.96822 0.96933 0.95406 0.94311 0.92316 0.89907 0.88751 0.93112 0.94525 0.89521 0.91438 0.88318 0.92658 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.87 10.02 -148.98 -1.49 -10.36 16 3 C 0.07 1.08 4.19 71.98 0.30 1.38 16 4 C -0.08 -1.70 0.44 -52.21 -0.02 -1.72 16 5 C 0.53 16.92 5.80 87.65 0.51 17.43 16 6 O -0.59 -24.80 14.80 -3.04 -0.04 -24.84 16 7 N -0.61 -17.82 2.95 -818.06 -2.41 -20.23 16 8 C 0.10 2.07 4.14 86.51 0.36 2.43 16 9 C -0.13 -3.27 6.10 30.82 0.19 -3.09 16 10 C -0.10 -3.47 4.78 30.62 0.15 -3.33 16 11 C -0.10 -3.92 2.54 -10.72 -0.03 -3.95 16 12 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 13 C 0.16 6.54 5.18 86.38 0.45 6.99 16 14 N -0.61 -31.32 2.75 -726.95 -2.00 -33.32 16 15 C 0.18 8.89 7.89 127.77 1.01 9.90 16 16 C -0.26 -15.18 9.66 84.04 0.81 -14.37 16 17 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 18 C -0.05 -2.62 5.16 84.86 0.44 -2.18 16 19 N -0.93 -55.25 10.59 21.65 0.23 -55.02 16 20 Si 0.96 46.79 29.56 68.60 2.03 48.82 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 24 C 0.13 4.25 5.72 86.37 0.49 4.75 16 25 C -0.10 -2.24 5.57 31.67 0.18 -2.06 16 26 C -0.13 -2.68 6.91 31.89 0.22 -2.46 16 27 C -0.12 -1.85 6.83 31.67 0.22 -1.64 16 28 C -0.12 -2.02 4.32 31.32 0.14 -1.88 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 0.91 8.01 -2.39 -0.02 0.89 16 33 H 0.08 0.96 5.27 -2.39 -0.01 0.94 16 34 H 0.09 1.49 8.13 -2.38 -0.02 1.47 16 35 H 0.11 1.78 2.88 -2.39 -0.01 1.77 16 36 H 0.04 1.29 7.95 -2.38 -0.02 1.27 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 2.08 5.43 -2.38 -0.01 2.07 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 41 H 0.06 2.32 7.87 -2.39 -0.02 2.31 16 42 H 0.01 0.72 5.84 -2.39 -0.01 0.70 16 43 H 0.01 0.65 7.22 -2.39 -0.02 0.63 16 44 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.06 2.30 7.00 -2.39 -0.02 2.28 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.09 1.62 7.76 -2.39 -0.02 1.60 16 49 H 0.05 1.54 6.83 -2.39 -0.02 1.52 16 50 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.05 1.26 6.74 -2.39 -0.02 1.24 16 55 H 0.11 1.13 7.03 -2.39 -0.02 1.11 16 Total: -1.00 -76.23 403.78 3.81 -72.43 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.85 Total: 14.71 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.65 Total: 7.82 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.18 Total: -108.57 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.54 Total: -35.21 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -76.23 3.81 -72.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490766169.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.741 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds