Wall clock time and date at job start Tue Mar 31 2020 21:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00103 * 2 1 4 4 C 1.50699 * 119.99614 * 179.97438 * 2 1 3 5 5 H 1.08994 * 109.47732 * 355.00094 * 4 2 1 6 6 C 1.53003 * 109.46953 * 115.00582 * 4 2 1 7 7 C 1.50701 * 109.47204 * 184.99988 * 6 4 2 8 8 O 1.21287 * 119.99949 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00597 * 180.02562 * 7 6 4 10 10 C 1.46925 * 120.63524 * 180.02562 * 9 7 6 11 11 C 1.53189 * 108.77251 * 233.62630 * 10 9 7 12 12 C 1.53049 * 109.31630 * 305.36250 * 11 10 9 13 13 C 1.52992 * 109.46109 * 181.38860 * 12 11 10 14 14 H 1.09002 * 109.47103 * 299.97040 * 13 12 11 15 15 C 1.52997 * 109.47482 * 59.97287 * 13 12 11 16 16 N 1.46497 * 109.47081 * 179.97438 * 13 12 11 17 17 C 1.36940 * 120.00565 * 154.99853 * 16 13 12 18 18 H 1.08004 * 119.99402 * 359.97438 * 17 16 13 19 19 C 1.38815 * 120.00150 * 179.97438 * 17 16 13 20 20 N 1.31614 * 119.99628 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99960 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47082 * 90.00300 * 21 19 17 23 23 H 1.48504 * 109.46783 * 209.99956 * 21 19 17 24 24 H 1.48497 * 109.47434 * 329.99825 * 21 19 17 25 25 C 1.53042 * 109.52476 * 61.37087 * 12 11 10 26 26 C 1.46935 * 120.62425 * 0.02562 * 9 7 6 27 27 O 1.42903 * 109.46953 * 234.99760 * 4 2 1 28 28 C 1.42901 * 113.99733 * 90.00436 * 27 4 2 29 29 C 1.53001 * 109.47014 * 179.97438 * 28 27 4 30 30 H 1.07995 * 120.00373 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99639 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46896 * 269.99654 * 3 2 1 33 33 H 1.09000 * 109.47235 * 29.99277 * 3 2 1 34 34 H 1.08995 * 109.47101 * 149.99876 * 3 2 1 35 35 H 1.09000 * 109.47463 * 64.99776 * 6 4 2 36 36 H 1.09002 * 109.46962 * 304.99282 * 6 4 2 37 37 H 1.08995 * 109.58787 * 113.83767 * 10 9 7 38 38 H 1.08995 * 109.70361 * 353.48066 * 10 9 7 39 39 H 1.08997 * 109.49975 * 185.41372 * 11 10 9 40 40 H 1.09002 * 109.52776 * 65.32724 * 11 10 9 41 41 H 1.09002 * 109.45741 * 301.36490 * 12 11 10 42 42 H 1.09002 * 109.47153 * 59.99783 * 15 13 12 43 43 H 1.09001 * 109.46832 * 299.99974 * 15 13 12 44 44 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 45 45 H 0.97006 * 119.99921 * 334.99446 * 16 13 12 46 46 H 0.96997 * 119.99943 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.49617 * 58.58251 * 25 12 11 48 48 H 1.08997 * 109.50004 * 178.67694 * 25 12 11 49 49 H 1.08993 * 109.58567 * 246.15873 * 26 9 7 50 50 H 1.08991 * 109.58764 * 6.44919 * 26 9 7 51 51 H 1.09002 * 109.46776 * 300.00029 * 28 27 4 52 52 H 1.09000 * 109.47046 * 59.99853 * 28 27 4 53 53 H 1.08992 * 109.47329 * 299.99650 * 29 28 27 54 54 H 1.09000 * 109.47323 * 60.00036 * 29 28 27 55 55 H 1.09002 * 109.46424 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 1.3585 -2.1316 0.0905 6 6 2.8464 -1.4425 -1.3067 7 6 3.5008 -2.7990 -1.3601 8 8 3.3556 -3.5789 -0.4427 9 7 4.2482 -3.1452 -2.4268 10 6 4.8920 -4.4642 -2.4936 11 6 6.3878 -4.2698 -2.7610 12 6 6.5705 -3.4169 -4.0186 13 6 8.0633 -3.2495 -4.3085 14 1 8.5447 -2.7577 -3.4632 15 6 8.6977 -4.6244 -4.5274 16 7 8.2385 -2.4336 -5.5126 17 6 9.3955 -1.7248 -5.6972 18 1 10.1789 -1.7670 -4.9548 19 6 9.5616 -0.9522 -6.8384 20 7 10.6739 -0.2714 -7.0160 21 14 8.2071 -0.8798 -8.1227 22 1 7.2810 0.2361 -7.8030 23 1 8.8069 -0.6569 -9.4627 24 1 7.4566 -2.1612 -8.1233 25 6 5.9360 -2.0414 -3.8004 26 6 4.4348 -2.2106 -3.5451 27 8 2.9708 -1.3308 1.1042 28 6 2.4138 -1.8756 2.3021 29 6 3.4682 -1.8541 3.4106 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4744 2.0648 0.5137 34 1 3.0159 1.1748 0.5138 35 1 3.6117 -0.6678 -1.3550 36 1 2.1657 -1.3341 -2.1511 37 1 4.4490 -5.0466 -3.3014 38 1 4.7551 -4.9883 -1.5477 39 1 6.8603 -5.2409 -2.9084 40 1 6.8476 -3.7667 -1.9104 41 1 6.0892 -3.9087 -4.8640 42 1 8.2164 -5.1163 -5.3727 43 1 8.5674 -5.2315 -3.6315 44 1 9.7613 -4.5051 -4.7344 45 1 7.5348 -2.3955 -6.1792 46 1 10.7899 0.2688 -7.8133 47 1 6.3997 -1.5593 -2.9397 48 1 6.0869 -1.4262 -4.6874 49 1 3.9546 -2.6094 -4.4386 50 1 3.9939 -1.2463 -3.2928 51 1 1.5536 -1.2793 2.6067 52 1 2.0980 -2.9031 2.1214 53 1 4.3280 -2.4506 3.1058 54 1 3.7844 -0.8268 3.5914 55 1 3.0430 -2.2693 4.3244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493828608.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:39 Heat of formation + Delta-G solvation = -83.959724 kcal Electronic energy + Delta-G solvation = -30858.031208 eV Core-core repulsion = 26894.572756 eV Total energy + Delta-G solvation = -3963.458452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.37938 -39.81239 -38.85300 -36.91284 -36.10207 -34.64699 -33.16197 -32.47684 -32.04355 -31.08434 -30.08999 -28.22826 -26.71380 -25.73276 -24.64382 -23.71572 -23.66210 -22.22949 -21.30080 -20.01760 -19.84947 -19.42899 -18.02644 -17.83218 -16.97843 -16.74886 -16.60572 -16.28374 -15.99490 -15.56244 -15.26036 -15.00489 -14.94080 -14.84599 -14.70870 -14.44388 -14.29692 -14.12404 -13.93511 -13.79333 -13.56618 -13.35371 -13.14878 -13.05006 -12.90991 -12.82423 -12.74184 -12.57318 -12.49359 -12.33436 -12.16870 -12.03828 -11.95974 -11.81758 -11.76910 -11.50812 -11.35091 -11.24502 -10.93391 -10.72245 -10.47050 -10.08566 -9.59880 -9.25452 -7.97685 -5.30079 1.19765 1.40170 1.44733 1.52081 1.66752 2.06091 2.52804 2.79712 3.34062 3.44703 3.56316 3.79758 3.84320 3.90845 3.92508 4.04337 4.15341 4.18233 4.21099 4.32035 4.37302 4.41708 4.45580 4.49639 4.53572 4.56336 4.59795 4.71173 4.77021 4.78896 4.82151 4.85778 4.89114 4.92386 4.93710 5.00524 5.03782 5.05783 5.09524 5.11731 5.17997 5.22959 5.23855 5.34661 5.48473 5.59516 5.64122 5.67708 5.82053 5.82504 6.26532 6.34588 6.45239 7.13703 7.20982 7.90178 8.10762 9.24591 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002655 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.558860 B =10544.171890 C =11408.327956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C -0.115 4.115 4 C 0.142 3.858 5 H 0.062 0.938 6 C -0.133 4.133 7 C 0.514 3.486 8 O -0.575 6.575 9 N -0.610 5.610 10 C 0.116 3.884 11 C -0.118 4.118 12 C -0.082 4.082 13 C 0.177 3.823 14 H 0.031 0.969 15 C -0.160 4.160 16 N -0.746 5.746 17 C -0.222 4.222 18 H 0.049 0.951 19 C -0.069 4.069 20 N -0.990 5.990 21 Si 0.956 3.044 22 H -0.273 1.273 23 H -0.303 1.303 24 H -0.248 1.248 25 C -0.124 4.124 26 C 0.110 3.890 27 O -0.388 6.388 28 C 0.062 3.938 29 C -0.146 4.146 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.366 0.634 46 H 0.256 0.744 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.054 0.946 52 H 0.039 0.961 53 H 0.046 0.954 54 H 0.061 0.939 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.179 -3.674 14.575 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.172 4.172 4 C 0.084 3.916 5 H 0.081 0.919 6 C -0.172 4.172 7 C 0.304 3.696 8 O -0.455 6.455 9 N -0.343 5.343 10 C -0.007 4.007 11 C -0.157 4.157 12 C -0.101 4.101 13 C 0.069 3.931 14 H 0.049 0.951 15 C -0.219 4.219 16 N -0.389 5.389 17 C -0.353 4.353 18 H 0.067 0.933 19 C -0.260 4.260 20 N -0.641 5.641 21 Si 0.783 3.217 22 H -0.199 1.199 23 H -0.230 1.230 24 H -0.173 1.173 25 C -0.162 4.162 26 C -0.012 4.012 27 O -0.308 6.308 28 C -0.014 4.014 29 C -0.203 4.203 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.200 0.800 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.121 0.879 51 H 0.072 0.928 52 H 0.058 0.942 53 H 0.065 0.935 54 H 0.080 0.920 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.857 -3.948 15.105 29.353 hybrid contribution 0.116 0.234 -0.965 0.999 sum -24.741 -3.715 14.140 28.738 Atomic orbital electron populations 1.23942 0.94650 1.03022 0.99547 1.22220 0.95822 0.96062 1.01706 1.20767 1.00137 0.93653 1.02620 1.20781 0.90547 0.94253 0.86027 0.91948 1.21890 1.01763 0.94537 0.99053 1.20944 0.78455 0.89403 0.80812 1.90647 1.63097 1.54237 1.37551 1.48245 1.49535 1.16885 1.19673 1.21574 0.92128 0.84160 1.02817 1.21910 0.95813 1.01054 0.96875 1.21301 0.94468 0.96081 0.98298 1.20394 0.94374 0.90447 0.87883 0.95100 1.22349 0.99839 0.98228 1.01491 1.42723 1.17555 1.55905 1.22749 1.18973 0.94337 1.18776 1.03192 0.93338 1.25520 0.99762 0.99868 1.00833 1.69901 1.28402 1.36079 1.29722 0.85392 0.79164 0.79087 0.78031 1.19901 1.23022 1.17269 1.21851 0.95151 0.97272 1.01950 1.21941 0.95940 0.94037 0.89309 1.87892 1.39423 1.83418 1.20027 1.22468 0.96847 0.96928 0.85167 1.21717 0.98753 1.02590 0.97254 0.88008 0.86616 0.90540 0.91152 0.92541 0.87402 0.85094 0.89892 0.90371 0.88994 0.93020 0.90082 0.92758 0.90842 0.95578 0.80030 0.93554 0.93133 0.91048 0.89305 0.87856 0.92761 0.94232 0.93460 0.91967 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 13.91 67.78 0.94 -1.21 16 2 C -0.16 -2.43 5.05 -16.49 -0.08 -2.51 16 3 C -0.12 -1.66 9.73 71.24 0.69 -0.96 16 4 C 0.14 2.77 1.87 29.85 0.06 2.82 16 5 H 0.06 1.29 7.25 -2.39 -0.02 1.28 16 6 C -0.13 -2.39 3.60 29.85 0.11 -2.28 16 7 C 0.51 12.41 7.58 87.66 0.66 13.07 16 8 O -0.58 -17.85 14.84 10.74 0.16 -17.69 16 9 N -0.61 -13.21 2.97 -818.87 -2.43 -15.64 16 10 C 0.12 2.47 6.43 86.36 0.56 3.03 16 11 C -0.12 -2.70 5.04 30.67 0.15 -2.55 16 12 C -0.08 -2.17 1.79 -10.77 -0.02 -2.19 16 13 C 0.18 6.29 2.47 44.99 0.11 6.40 16 14 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 15 C -0.16 -5.21 9.14 71.98 0.66 -4.55 16 16 N -0.75 -32.85 4.21 -322.95 -1.36 -34.21 16 17 C -0.22 -12.39 10.41 84.03 0.87 -11.51 16 18 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 19 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 20 N -0.99 -63.47 13.97 21.65 0.30 -63.17 16 21 Si 0.96 44.09 27.73 68.60 1.90 46.00 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 25 C -0.12 -3.18 5.22 30.68 0.16 -3.02 16 26 C 0.11 2.03 6.34 86.37 0.55 2.58 16 27 O -0.39 -9.34 8.76 -135.19 -1.18 -10.53 16 28 C 0.06 1.27 6.46 71.98 0.46 1.73 16 29 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 30 H 0.10 1.15 7.84 -2.91 -0.02 1.12 16 31 H 0.12 1.10 8.04 -2.91 -0.02 1.08 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 34 H 0.06 0.99 7.72 -2.39 -0.02 0.97 16 35 H 0.11 1.89 7.59 -2.39 -0.02 1.87 16 36 H 0.13 1.60 7.94 -2.39 -0.02 1.58 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.89 7.01 -2.39 -0.02 1.87 16 39 H 0.09 1.86 6.36 -2.39 -0.02 1.85 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.92 6.40 -2.39 -0.02 1.91 16 44 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.37 15.19 5.45 -92.70 -0.50 14.68 16 46 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.07 2.05 7.41 -2.39 -0.02 2.04 16 49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.10 1.50 5.93 -2.39 -0.01 1.48 16 51 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 52 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 53 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 55 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.42 427.26 4.76 -68.66 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.27 Total: 33.14 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 7.09 Total: -6.57 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -3.49 Total: -113.02 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.03 Total: -28.22 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 46.00 kcal Total: -73.42 4.76 -68.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493828608.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.296 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds