Wall clock time and date at job start Tue Mar 31 2020 21:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00111 * 2 1 4 4 C 1.50697 * 120.00126 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47308 * 5.00414 * 4 2 1 6 6 C 1.53007 * 109.47288 * 245.00299 * 4 2 1 7 7 C 1.50696 * 109.47054 * 175.00012 * 6 4 2 8 8 O 1.21286 * 120.00306 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00030 * 180.02562 * 7 6 4 10 10 C 1.46926 * 120.63336 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 233.68039 * 10 9 7 12 12 C 1.53035 * 109.31327 * 305.29292 * 11 10 9 13 13 C 1.53007 * 109.46118 * 181.38770 * 12 11 10 14 14 H 1.09004 * 109.47043 * 59.99911 * 13 12 11 15 15 C 1.52994 * 109.46992 * 300.00084 * 13 12 11 16 16 N 1.46497 * 109.47126 * 179.97438 * 13 12 11 17 17 C 1.36936 * 120.00060 * 204.99679 * 16 13 12 18 18 H 1.08002 * 119.99772 * 0.02562 * 17 16 13 19 19 C 1.38813 * 120.00225 * 180.02562 * 17 16 13 20 20 N 1.31619 * 119.99824 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99781 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46768 * 90.00687 * 21 19 17 23 23 H 1.48501 * 109.47107 * 210.00010 * 21 19 17 24 24 H 1.48496 * 109.47305 * 330.00395 * 21 19 17 25 25 C 1.53038 * 109.54175 * 61.36680 * 12 11 10 26 26 C 1.47207 * 120.81118 * 0.14238 * 9 7 6 27 27 O 1.42902 * 109.47525 * 125.00203 * 4 2 1 28 28 C 1.42895 * 114.00060 * 270.00609 * 27 4 2 29 29 C 1.52993 * 109.47376 * 179.97438 * 28 27 4 30 30 H 1.07999 * 120.00185 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.00181 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46775 * 269.99879 * 3 2 1 33 33 H 1.09003 * 109.46642 * 29.99920 * 3 2 1 34 34 H 1.09004 * 109.47081 * 149.99590 * 3 2 1 35 35 H 1.08992 * 109.47110 * 54.99783 * 6 4 2 36 36 H 1.09000 * 109.46956 * 294.99388 * 6 4 2 37 37 H 1.09002 * 109.58861 * 113.82042 * 10 9 7 38 38 H 1.08996 * 109.58519 * 353.53933 * 10 9 7 39 39 H 1.09003 * 109.49975 * 65.24379 * 11 10 9 40 40 H 1.09000 * 109.49553 * 185.30642 * 11 10 9 41 41 H 1.09004 * 109.45942 * 301.34050 * 12 11 10 42 42 H 1.08993 * 109.47316 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.47085 * 299.99801 * 15 13 12 44 44 H 1.09000 * 109.47538 * 59.99899 * 15 13 12 45 45 H 0.97000 * 120.00145 * 25.00283 * 16 13 12 46 46 H 0.97003 * 119.99280 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.49557 * 58.58503 * 25 12 11 48 48 H 1.08996 * 109.50003 * 178.68400 * 25 12 11 49 49 H 1.08996 * 109.53610 * 6.53286 * 26 9 7 50 50 H 1.09002 * 109.68003 * 246.22753 * 26 9 7 51 51 H 1.09007 * 109.47019 * 299.99529 * 28 27 4 52 52 H 1.08999 * 109.47583 * 59.99238 * 28 27 4 53 53 H 1.09004 * 109.47394 * 299.99669 * 29 28 27 54 54 H 1.09000 * 109.47408 * 59.99736 * 29 28 27 55 55 H 1.09006 * 109.47688 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3586 -2.1317 -0.0887 6 6 2.8464 -1.4414 1.3081 7 6 3.5008 -2.7978 1.3626 8 8 3.3550 -3.5788 0.4462 9 7 4.2473 -3.1434 2.4302 10 6 4.8921 -4.4619 2.4976 11 6 4.4905 -5.1440 3.8092 12 6 4.8277 -4.2219 4.9831 13 6 4.4598 -4.9141 6.2970 14 1 5.0246 -5.8418 6.3896 15 6 2.9620 -5.2259 6.3072 16 7 4.7831 -4.0319 7.4210 17 6 5.0355 -4.5630 8.6577 18 1 4.9967 -5.6323 8.8043 19 6 5.3414 -3.7270 9.7228 20 7 5.5845 -4.2376 10.9113 21 14 5.4093 -1.8776 9.4690 22 1 4.0668 -1.2941 9.7192 23 1 6.3905 -1.2842 10.4125 24 1 5.8243 -1.5844 8.0737 25 6 4.0359 -2.9187 4.8543 26 6 4.4328 -2.2112 3.5542 27 8 2.9709 -1.3317 -1.1030 28 6 2.4140 -1.8775 -2.3004 29 6 3.4680 -1.8559 -3.4092 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9353 -0.0004 32 1 2.2452 1.6197 -1.0276 33 1 1.4744 2.0648 0.5138 34 1 3.0159 1.1748 0.5139 35 1 2.1657 -1.3322 2.1522 36 1 3.6117 -0.6667 1.3558 37 1 5.9749 -4.3413 2.4651 38 1 4.5669 -5.0712 1.6543 39 1 3.4193 -5.3458 3.8012 40 1 5.0366 -6.0815 3.9137 41 1 5.8950 -4.0006 4.9760 42 1 2.6999 -5.7194 7.2430 43 1 2.3971 -4.2982 6.2146 44 1 2.7218 -5.8825 5.4709 45 1 4.8182 -3.0715 7.2892 46 1 5.7979 -3.6533 11.6557 47 1 2.9690 -3.1415 4.8364 48 1 4.2588 -2.2721 5.7029 49 1 3.8023 -1.3341 3.4082 50 1 5.4775 -1.9051 3.6088 51 1 2.0981 -2.9049 -2.1189 52 1 1.5538 -1.2816 -2.6056 53 1 3.7834 -0.8284 -3.5907 54 1 4.3283 -2.4516 -3.1043 55 1 3.0433 -2.2726 -4.3225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493828612.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:48 Heat of formation + Delta-G solvation = -81.598139 kcal Electronic energy + Delta-G solvation = -30837.114448 eV Core-core repulsion = 26873.758401 eV Total energy + Delta-G solvation = -3963.356046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39985 -39.87401 -38.90457 -36.87586 -36.11222 -34.66695 -33.17687 -32.46257 -31.98148 -30.97147 -30.04578 -28.23270 -26.78128 -25.73071 -24.63085 -24.16542 -23.65575 -22.54724 -20.80123 -19.88124 -19.85423 -19.36394 -18.04691 -17.75150 -17.03189 -16.65386 -16.55521 -16.35123 -16.12783 -15.54970 -15.48657 -15.21378 -15.00277 -14.77907 -14.60163 -14.43482 -14.23806 -14.15261 -14.01354 -13.86782 -13.43688 -13.21676 -13.11421 -13.06342 -12.94094 -12.80811 -12.76215 -12.69686 -12.56197 -12.43640 -12.14317 -11.97635 -11.83017 -11.80108 -11.76671 -11.63746 -11.31618 -11.13990 -10.92292 -10.72667 -10.46103 -10.09191 -9.61844 -9.26733 -7.98579 -5.31111 1.19172 1.38428 1.43733 1.51004 1.67772 2.03823 2.51935 2.78878 3.32801 3.43648 3.57219 3.78503 3.87882 3.90100 3.92891 4.00665 4.13662 4.19090 4.20453 4.31733 4.35275 4.39159 4.42231 4.49853 4.53842 4.55616 4.64675 4.72205 4.73380 4.77189 4.80492 4.86743 4.87329 4.93647 4.94597 4.99569 5.01594 5.06377 5.09395 5.10980 5.17999 5.22528 5.24385 5.32785 5.40310 5.60004 5.64042 5.69713 5.81117 5.82030 6.25824 6.33760 6.45516 7.13094 7.21109 7.89925 8.09924 9.23395 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.002503 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.058058 B =11186.015321 C =12091.120773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C -0.110 4.110 4 C 0.142 3.858 5 H 0.057 0.943 6 C -0.133 4.133 7 C 0.515 3.485 8 O -0.576 6.576 9 N -0.609 5.609 10 C 0.115 3.885 11 C -0.117 4.117 12 C -0.084 4.084 13 C 0.176 3.824 14 H 0.036 0.964 15 C -0.158 4.158 16 N -0.748 5.748 17 C -0.225 4.225 18 H 0.051 0.949 19 C -0.071 4.071 20 N -0.988 5.988 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.300 1.300 24 H -0.243 1.243 25 C -0.129 4.129 26 C 0.109 3.891 27 O -0.384 6.384 28 C 0.061 3.939 29 C -0.145 4.145 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.367 0.633 46 H 0.256 0.744 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.109 0.891 50 H 0.079 0.921 51 H 0.037 0.963 52 H 0.053 0.947 53 H 0.064 0.936 54 H 0.048 0.952 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 11.052 -28.518 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.084 3.916 5 H 0.076 0.924 6 C -0.172 4.172 7 C 0.305 3.695 8 O -0.456 6.456 9 N -0.342 5.342 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.103 4.103 13 C 0.069 3.931 14 H 0.054 0.946 15 C -0.217 4.217 16 N -0.393 5.393 17 C -0.356 4.356 18 H 0.069 0.931 19 C -0.262 4.262 20 N -0.640 5.640 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.227 1.227 24 H -0.167 1.167 25 C -0.167 4.167 26 C -0.013 4.013 27 O -0.304 6.304 28 C -0.015 4.015 29 C -0.202 4.202 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.201 0.799 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.127 0.873 50 H 0.098 0.902 51 H 0.055 0.945 52 H 0.071 0.929 53 H 0.083 0.917 54 H 0.067 0.933 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.168 10.542 -28.846 31.780 hybrid contribution -0.034 0.339 0.869 0.934 sum -8.201 10.881 -27.977 31.119 Atomic orbital electron populations 1.23949 0.94870 1.02920 0.99722 1.22244 0.95738 0.96234 1.01522 1.20747 1.00225 0.93459 1.02256 1.20774 0.90557 0.94137 0.86162 0.92447 1.21894 1.01904 0.94646 0.98777 1.20941 0.78030 0.89546 0.80976 1.90654 1.62740 1.54197 1.37967 1.48269 1.50020 1.16763 1.19185 1.21533 0.97334 0.83790 0.98072 1.21896 1.02277 0.98584 0.92829 1.21289 1.00027 0.95629 0.93359 1.20378 0.93904 0.92670 0.86197 0.94566 1.22360 0.98169 1.01108 1.00096 1.42815 1.85281 1.05059 1.06148 1.19022 1.37440 0.92595 0.86534 0.93104 1.25547 1.02612 1.02924 0.95082 1.69905 1.56768 1.35892 1.01388 0.85419 0.77512 0.80452 0.78499 1.20449 1.22744 1.16731 1.21981 1.00938 0.96583 0.97239 1.21970 1.03073 0.92092 0.84157 1.87869 1.39252 1.83380 1.19903 1.22466 0.96941 0.96806 0.85288 1.21706 0.98690 1.02713 0.97059 0.88382 0.86577 0.91717 0.90767 0.91630 0.85539 0.86508 0.90903 0.90250 0.91323 0.90072 0.91302 0.95622 0.92524 0.91395 0.79865 0.93556 0.90814 0.91247 0.87253 0.90246 0.94512 0.92922 0.91709 0.93280 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 13.91 67.79 0.94 -1.24 16 2 C -0.16 -2.24 5.05 -16.48 -0.08 -2.33 16 3 C -0.11 -1.32 9.84 71.24 0.70 -0.62 16 4 C 0.14 2.60 1.86 29.85 0.06 2.66 16 5 H 0.06 1.19 7.25 -2.39 -0.02 1.18 16 6 C -0.13 -2.18 3.57 29.85 0.11 -2.07 16 7 C 0.52 11.85 7.58 87.66 0.66 12.51 16 8 O -0.58 -17.41 14.83 10.73 0.16 -17.25 16 9 N -0.61 -12.67 2.98 -818.10 -2.44 -15.11 16 10 C 0.12 2.50 6.42 86.36 0.55 3.06 16 11 C -0.12 -2.63 4.97 30.67 0.15 -2.48 16 12 C -0.08 -2.20 2.14 -10.77 -0.02 -2.22 16 13 C 0.18 6.21 2.72 44.99 0.12 6.33 16 14 H 0.04 1.40 8.08 -2.38 -0.02 1.39 16 15 C -0.16 -5.14 8.79 71.98 0.63 -4.51 16 16 N -0.75 -33.01 4.85 -322.94 -1.57 -34.58 16 17 C -0.22 -12.58 10.41 84.03 0.87 -11.71 16 18 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.99 -63.35 13.97 21.65 0.30 -63.05 16 21 Si 0.95 44.06 27.73 68.60 1.90 45.96 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 24 H -0.24 -9.73 6.52 99.48 0.65 -9.08 16 25 C -0.13 -2.90 4.82 30.69 0.15 -2.76 16 26 C 0.11 1.88 6.36 86.32 0.55 2.43 16 27 O -0.38 -8.41 9.07 -135.20 -1.23 -9.64 16 28 C 0.06 1.16 6.46 71.98 0.46 1.63 16 29 C -0.14 -2.28 10.28 71.98 0.74 -1.54 16 30 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 31 H 0.12 1.09 8.04 -2.91 -0.02 1.07 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.69 8.06 -2.39 -0.02 0.67 16 34 H 0.06 0.77 7.02 -2.38 -0.02 0.76 16 35 H 0.13 1.54 7.69 -2.39 -0.02 1.52 16 36 H 0.12 1.59 7.01 -2.39 -0.02 1.58 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.92 7.00 -2.39 -0.02 1.90 16 39 H 0.07 1.58 6.51 -2.39 -0.02 1.56 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.73 6.46 -2.38 -0.02 1.71 16 44 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 45 H 0.37 15.13 3.90 -92.71 -0.36 14.77 16 46 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 47 H 0.07 1.65 6.51 -2.39 -0.02 1.63 16 48 H 0.07 1.71 6.46 -2.39 -0.02 1.70 16 49 H 0.11 1.31 5.97 -2.39 -0.01 1.30 16 50 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.04 0.79 8.09 -2.38 -0.02 0.77 16 52 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 54 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 55 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -73.06 420.97 4.63 -68.43 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.43 Total: 31.74 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 7.07 Total: -6.51 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -3.70 Total: -112.74 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.07 Total: -26.89 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal Total: -73.06 4.63 -68.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493828612.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.165 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds