Wall clock time and date at job start Tue Mar 31 2020 21:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50692 * 119.99973 * 2 1 4 4 C 1.50699 * 119.99705 * 179.97438 * 2 1 3 5 5 H 1.09001 * 109.47582 * 5.00271 * 4 2 1 6 6 C 1.53005 * 109.47272 * 244.99924 * 4 2 1 7 7 C 1.50693 * 109.47204 * 175.00491 * 6 4 2 8 8 O 1.21282 * 120.00105 * 359.97438 * 7 6 4 9 9 N 1.34784 * 119.99956 * 180.02562 * 7 6 4 10 10 C 1.46921 * 120.62802 * 359.71249 * 9 7 6 11 11 C 1.53629 * 108.54112 * 126.37164 * 10 9 7 12 12 C 1.53041 * 109.24006 * 54.85676 * 11 10 9 13 13 C 1.52996 * 109.46166 * 178.48773 * 12 11 10 14 14 H 1.09007 * 109.46920 * 60.07019 * 13 12 11 15 15 C 1.52995 * 109.47433 * 180.02562 * 13 12 11 16 16 N 1.46504 * 109.47195 * 300.07295 * 13 12 11 17 17 C 1.36932 * 119.99957 * 154.99740 * 16 13 12 18 18 H 1.08003 * 120.00109 * 359.97438 * 17 16 13 19 19 C 1.38816 * 119.99955 * 179.97438 * 17 16 13 20 20 N 1.31619 * 119.99813 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00079 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47021 * 90.00134 * 21 19 17 23 23 H 1.48506 * 109.46930 * 210.00152 * 21 19 17 24 24 H 1.48499 * 109.47397 * 330.00139 * 21 19 17 25 25 C 1.53034 * 109.53737 * 298.51205 * 12 11 10 26 26 C 1.46919 * 120.62963 * 179.97438 * 9 7 6 27 27 O 1.42905 * 109.47093 * 125.00242 * 4 2 1 28 28 C 1.42899 * 113.99778 * 269.99983 * 27 4 2 29 29 C 1.52999 * 109.46889 * 179.97438 * 28 27 4 30 30 H 1.08000 * 119.99702 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99763 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47134 * 269.99729 * 3 2 1 33 33 H 1.08997 * 109.47319 * 29.99939 * 3 2 1 34 34 H 1.09001 * 109.47538 * 150.00029 * 3 2 1 35 35 H 1.09004 * 109.46988 * 295.00248 * 6 4 2 36 36 H 1.09000 * 109.46765 * 55.00036 * 6 4 2 37 37 H 1.08997 * 109.58628 * 246.20427 * 10 9 7 38 38 H 1.08996 * 109.58739 * 6.63223 * 10 9 7 39 39 H 1.08998 * 109.63726 * 294.86506 * 11 10 9 40 40 H 1.09001 * 109.45329 * 174.73873 * 11 10 9 41 41 H 1.09003 * 109.44790 * 58.52176 * 12 11 10 42 42 H 1.08999 * 109.46977 * 59.99885 * 15 13 12 43 43 H 1.09005 * 109.47450 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.47023 * 300.00162 * 15 13 12 45 45 H 0.97001 * 119.99836 * 334.99028 * 16 13 12 46 46 H 0.97001 * 119.99830 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.49939 * 301.41105 * 25 12 11 48 48 H 1.09002 * 109.52439 * 181.33209 * 25 12 11 49 49 H 1.09003 * 109.58832 * 353.36995 * 26 9 7 50 50 H 1.09008 * 109.58804 * 113.65301 * 26 9 7 51 51 H 1.08997 * 109.47171 * 299.99768 * 28 27 4 52 52 H 1.08997 * 109.47442 * 59.99964 * 28 27 4 53 53 H 1.09001 * 109.47296 * 179.97438 * 29 28 27 54 54 H 1.08997 * 109.47286 * 300.00017 * 29 28 27 55 55 H 1.09008 * 109.47201 * 60.00236 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3586 -2.1317 -0.0887 6 6 2.8465 -1.4415 1.3080 7 6 3.5009 -2.7978 1.3625 8 8 3.3550 -3.5788 0.4461 9 7 4.2475 -3.1434 2.4301 10 6 4.4376 -2.2062 3.5455 11 6 4.0367 -2.9117 4.8501 12 6 4.8283 -4.2148 4.9826 13 6 4.4606 -4.9030 6.2986 14 1 3.3933 -5.1248 6.3068 15 6 5.2522 -6.2054 6.4317 16 7 4.7839 -4.0172 7.4199 17 6 4.1177 -4.1471 8.6091 18 1 3.3535 -4.9022 8.7204 19 6 4.4244 -3.3082 9.6717 20 7 5.3552 -2.3876 9.5359 21 14 3.5161 -3.4858 11.2943 22 1 4.2417 -4.4449 12.1654 23 1 3.4420 -2.1641 11.9673 24 1 2.1425 -3.9895 11.0402 25 6 4.4904 -5.1401 3.8115 26 6 4.8913 -4.4623 2.4980 27 8 2.9710 -1.3318 -1.1030 28 6 2.4139 -1.8776 -2.3005 29 6 3.4680 -1.8559 -3.4092 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1748 0.5138 35 1 3.6117 -0.6667 1.3557 36 1 2.1657 -1.3322 2.1522 37 1 5.4842 -1.9058 3.5961 38 1 3.8100 -1.3278 3.3958 39 1 2.9698 -3.1342 4.8332 40 1 4.2597 -2.2628 5.6970 41 1 5.8956 -3.9935 4.9743 42 1 6.3195 -5.9844 6.4231 43 1 4.9899 -6.6960 7.3691 44 1 5.0109 -6.8641 5.5974 45 1 5.4700 -3.3389 7.3198 46 1 5.5693 -1.8012 10.2783 47 1 3.4192 -5.3417 3.8044 48 1 5.0362 -6.0775 3.9186 49 1 4.5631 -5.0729 1.6567 50 1 5.9742 -4.3426 2.4621 51 1 2.0981 -2.9049 -2.1189 52 1 1.5538 -1.2816 -2.6056 53 1 3.0433 -2.2727 -4.3225 54 1 3.7834 -0.8285 -3.5907 55 1 4.3284 -2.4517 -3.1043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493828615.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:52 Heat of formation + Delta-G solvation = -85.912962 kcal Electronic energy + Delta-G solvation = -30654.794816 eV Core-core repulsion = 26691.251665 eV Total energy + Delta-G solvation = -3963.543151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37318 -39.77906 -38.79867 -36.80776 -36.11109 -34.62872 -33.04766 -32.27231 -31.99288 -30.91943 -29.80017 -28.23291 -26.70745 -25.85338 -24.79357 -23.70474 -23.64954 -22.27634 -21.08035 -19.96740 -19.82441 -19.06152 -18.06633 -17.76972 -16.98417 -16.77578 -16.56826 -16.31946 -15.67377 -15.53769 -15.44370 -15.19855 -14.96962 -14.79585 -14.55362 -14.40240 -14.18608 -14.03346 -13.83145 -13.65719 -13.41208 -13.33996 -13.18609 -12.97157 -12.84748 -12.79237 -12.74466 -12.60034 -12.44280 -12.28933 -12.16901 -12.09556 -11.96074 -11.83368 -11.75993 -11.48078 -11.32113 -11.17039 -10.89755 -10.71007 -10.45925 -10.09172 -9.59365 -8.93253 -7.89675 -5.15608 1.19014 1.48386 1.49012 1.56919 1.66834 2.05321 2.58876 2.78776 3.43750 3.44211 3.78194 3.83735 3.86479 3.91214 3.94035 4.06950 4.18896 4.21498 4.27161 4.33891 4.37972 4.41918 4.45664 4.50742 4.56326 4.57965 4.63277 4.73190 4.76913 4.81436 4.83739 4.86998 4.90854 4.93879 4.96132 5.01510 5.06646 5.07638 5.10758 5.15650 5.17859 5.25046 5.27220 5.39532 5.50119 5.55257 5.63614 5.65195 5.70730 5.81014 6.33370 6.33878 6.45257 7.20303 7.39959 8.17853 8.41392 9.33514 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.002406 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.282764 B =11636.688168 C =12851.551189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C -0.110 4.110 4 C 0.143 3.857 5 H 0.058 0.942 6 C -0.134 4.134 7 C 0.515 3.485 8 O -0.575 6.575 9 N -0.610 5.610 10 C 0.112 3.888 11 C -0.116 4.116 12 C -0.080 4.080 13 C 0.173 3.827 14 H 0.034 0.966 15 C -0.158 4.158 16 N -0.730 5.730 17 C -0.230 4.230 18 H 0.069 0.931 19 C -0.074 4.074 20 N -0.966 5.966 21 Si 0.963 3.037 22 H -0.292 1.292 23 H -0.296 1.296 24 H -0.273 1.273 25 C -0.116 4.116 26 C 0.115 3.885 27 O -0.384 6.384 28 C 0.061 3.939 29 C -0.144 4.144 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.374 0.626 46 H 0.249 0.751 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.037 0.963 52 H 0.053 0.947 53 H 0.087 0.913 54 H 0.064 0.936 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 4.113 -23.952 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.167 4.167 4 C 0.085 3.915 5 H 0.076 0.924 6 C -0.173 4.173 7 C 0.305 3.695 8 O -0.455 6.455 9 N -0.342 5.342 10 C -0.010 4.010 11 C -0.155 4.155 12 C -0.099 4.099 13 C 0.065 3.935 14 H 0.052 0.948 15 C -0.218 4.218 16 N -0.371 5.371 17 C -0.362 4.362 18 H 0.086 0.914 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.793 3.207 22 H -0.219 1.219 23 H -0.223 1.223 24 H -0.198 1.198 25 C -0.154 4.154 26 C -0.008 4.008 27 O -0.304 6.304 28 C -0.016 4.016 29 C -0.201 4.201 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.206 0.794 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.099 0.901 50 H 0.094 0.906 51 H 0.055 0.945 52 H 0.071 0.929 53 H 0.106 0.894 54 H 0.083 0.917 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.064 3.699 -24.296 25.313 hybrid contribution -0.292 -0.095 1.437 1.469 sum -6.357 3.605 -22.859 23.999 Atomic orbital electron populations 1.23952 0.94839 1.02944 0.99711 1.22252 0.95779 0.96241 1.01534 1.20744 1.00186 0.93456 1.02303 1.20752 0.90508 0.94156 0.86067 0.92414 1.21888 1.01866 0.94760 0.98785 1.20923 0.78088 0.89529 0.80989 1.90640 1.62826 1.54145 1.37893 1.48240 1.49990 1.16721 1.19297 1.21974 1.02758 0.91925 0.84373 1.21838 0.99646 0.97071 0.96911 1.21243 0.99805 0.95200 0.93659 1.20428 0.96325 0.89963 0.86806 0.94825 1.22367 1.00230 0.98755 1.00439 1.42556 1.45086 1.39780 1.09641 1.19526 1.13668 1.12567 0.90452 0.91354 1.25400 1.00789 0.99127 1.01297 1.69788 1.35975 1.23882 1.32123 0.85287 0.78477 0.76253 0.80656 1.21933 1.22294 1.19802 1.21895 1.01724 0.98913 0.92878 1.21568 0.97442 0.83611 0.98130 1.87872 1.39226 1.83386 1.19893 1.22478 0.96994 0.96814 0.85274 1.21706 0.98667 1.02726 0.97026 0.88360 0.86515 0.91549 0.90791 0.91757 0.86616 0.85939 0.90293 0.87815 0.92726 0.91665 0.91450 0.93808 0.95142 0.90952 0.79402 0.94215 0.92383 0.89155 0.90109 0.90649 0.94497 0.92901 0.89442 0.91709 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 13.91 67.77 0.94 -1.59 16 2 C -0.16 -2.59 5.05 -16.50 -0.08 -2.68 16 3 C -0.11 -1.56 9.84 71.23 0.70 -0.85 16 4 C 0.14 2.95 1.86 29.85 0.06 3.01 16 5 H 0.06 1.32 7.25 -2.39 -0.02 1.30 16 6 C -0.13 -2.61 3.56 29.85 0.11 -2.50 16 7 C 0.52 13.27 7.58 87.65 0.66 13.94 16 8 O -0.58 -18.56 14.83 10.74 0.16 -18.40 16 9 N -0.61 -14.60 2.97 -818.16 -2.43 -17.03 16 10 C 0.11 2.45 6.37 86.51 0.55 3.01 16 11 C -0.12 -3.32 5.24 30.82 0.16 -3.16 16 12 C -0.08 -2.33 1.78 -10.77 -0.02 -2.35 16 13 C 0.17 6.41 2.47 44.99 0.11 6.52 16 14 H 0.03 1.32 8.08 -2.38 -0.02 1.30 16 15 C -0.16 -5.36 9.14 71.98 0.66 -4.70 16 16 N -0.73 -34.80 4.41 -322.94 -1.42 -36.22 16 17 C -0.23 -12.39 9.93 84.04 0.83 -11.55 16 18 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 20 N -0.97 -57.47 13.06 21.65 0.28 -57.19 16 21 Si 0.96 45.61 29.55 68.60 2.03 47.63 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 C -0.12 -2.82 5.04 30.66 0.15 -2.66 16 26 C 0.11 2.72 6.43 86.35 0.55 3.28 16 27 O -0.38 -9.07 9.07 -135.20 -1.23 -10.30 16 28 C 0.06 1.23 6.46 71.98 0.46 1.69 16 29 C -0.14 -2.41 10.28 71.98 0.74 -1.67 16 30 H 0.10 1.37 7.84 -2.91 -0.02 1.34 16 31 H 0.12 1.31 8.04 -2.91 -0.02 1.28 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.07 0.85 8.06 -2.39 -0.02 0.83 16 34 H 0.06 0.92 7.02 -2.39 -0.02 0.90 16 35 H 0.12 1.96 6.98 -2.39 -0.02 1.94 16 36 H 0.12 1.99 7.70 -2.39 -0.02 1.97 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 1.82 5.93 -2.39 -0.01 1.80 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 2.25 7.40 -2.39 -0.02 2.23 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.07 1.95 6.40 -2.39 -0.02 1.94 16 45 H 0.37 19.05 7.58 -92.71 -0.70 18.35 16 46 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.09 1.97 6.36 -2.39 -0.02 1.96 16 49 H 0.08 2.07 7.01 -2.39 -0.02 2.05 16 50 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 51 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 52 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 55 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -67.11 429.23 4.60 -62.52 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.14 Total: 34.94 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 7.06 Total: -5.96 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -3.57 Total: -110.44 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.07 Total: -28.69 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -67.11 4.60 -62.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493828615.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.397 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds