Wall clock time and date at job start Tue Mar 31 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99841 * 2 1 4 4 C 1.53005 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.50701 * 110.43285 * 294.32031 * 4 3 2 6 6 O 1.21284 * 120.00052 * 111.29915 * 5 4 3 7 7 N 1.34775 * 120.00283 * 291.57690 * 5 4 3 8 8 C 1.46930 * 120.62855 * 3.35562 * 7 5 4 9 9 C 1.53625 * 108.54486 * 126.37178 * 8 7 5 10 10 C 1.53035 * 109.24033 * 54.85424 * 9 8 7 11 11 C 1.53008 * 109.45757 * 178.49051 * 10 9 8 12 12 N 1.46493 * 109.47060 * 295.06832 * 11 10 9 13 13 C 1.46511 * 119.99984 * 90.00113 * 12 11 10 14 14 C 1.36934 * 120.00332 * 269.99727 * 12 11 10 15 15 H 1.08000 * 120.00161 * 18.32220 * 14 12 11 16 16 C 1.38810 * 120.00371 * 198.32140 * 14 12 11 17 17 N 1.31621 * 119.99950 * 15.74777 * 16 14 12 18 18 Si 1.86805 * 120.00235 * 195.74588 * 16 14 12 19 19 H 1.48504 * 109.46929 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47151 * 119.99996 * 18 16 14 21 21 H 1.48496 * 109.47158 * 240.00153 * 18 16 14 22 22 C 1.53034 * 109.54266 * 298.50988 * 10 9 8 23 23 C 1.46926 * 120.63508 * 183.63440 * 7 5 4 24 24 C 1.54885 * 110.59564 * 56.93633 * 4 3 2 25 25 C 1.54890 * 102.74825 * 156.68005 * 24 4 3 26 26 C 1.54272 * 104.19477 * 322.05938 * 25 24 4 27 27 C 1.53875 * 106.59675 * 23.60781 * 26 25 24 28 28 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47051 * 299.99667 * 1 2 3 30 30 H 1.08996 * 109.47204 * 60.00426 * 1 2 3 31 31 H 1.09004 * 109.47356 * 60.00299 * 3 2 1 32 32 H 1.08996 * 109.47382 * 300.00137 * 3 2 1 33 33 H 1.09000 * 109.58543 * 246.20460 * 8 7 5 34 34 H 1.09004 * 109.58474 * 6.62381 * 8 7 5 35 35 H 1.09000 * 109.63220 * 294.86102 * 9 8 7 36 36 H 1.08998 * 109.42902 * 174.72350 * 9 8 7 37 37 H 1.09000 * 109.46153 * 58.53296 * 10 9 8 38 38 H 1.09000 * 109.46495 * 55.07026 * 11 10 9 39 39 H 1.08998 * 109.46775 * 175.07047 * 11 10 9 40 40 H 1.08998 * 109.47032 * 95.29060 * 13 12 11 41 41 H 1.08994 * 109.46983 * 215.28914 * 13 12 11 42 42 H 1.09002 * 109.46731 * 335.28792 * 13 12 11 43 43 H 0.97004 * 119.99823 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.49782 * 301.41899 * 22 10 9 45 45 H 1.09001 * 109.50509 * 181.31920 * 22 10 9 46 46 H 1.09002 * 109.58220 * 353.37584 * 23 7 5 47 47 H 1.09001 * 109.58523 * 113.79421 * 23 7 5 48 48 H 1.09002 * 110.75656 * 274.99007 * 24 4 3 49 49 H 1.08993 * 110.75857 * 38.36090 * 24 4 3 50 50 H 1.08998 * 110.48910 * 203.37808 * 25 24 4 51 51 H 1.09005 * 110.48644 * 80.73084 * 25 24 4 52 52 H 1.09002 * 110.02655 * 264.32902 * 26 25 24 53 53 H 1.08996 * 110.07363 * 142.91476 * 26 25 24 54 54 H 1.09001 * 110.03326 * 240.71681 * 27 26 25 55 55 H 1.09002 * 110.07239 * 119.31116 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0135 0.5637 1.2878 6 8 4.4965 -0.5489 1.2817 7 7 3.8993 1.2422 2.4467 8 6 3.2447 2.5571 2.4828 9 6 2.1379 2.5229 3.5476 10 6 2.7381 2.0830 4.8849 11 6 1.6473 2.0834 5.9579 12 7 1.1761 3.4534 6.1747 13 6 0.0579 3.9770 5.3859 14 6 1.7807 4.2448 7.1145 15 1 2.7641 3.9914 7.4821 16 6 1.1296 5.3726 7.5950 17 7 -0.1633 5.5204 7.3975 18 14 2.0883 6.6808 8.5219 19 1 3.5157 6.2802 8.6085 20 1 1.9809 7.9757 7.8031 21 1 1.5307 6.8266 9.8905 22 6 3.3171 0.6732 4.7471 23 6 4.4323 0.6839 3.6968 24 6 4.0167 0.3530 -1.2141 25 6 5.4780 0.8320 -1.3990 26 6 5.4218 2.3436 -1.0958 27 6 4.1867 2.5678 -0.2059 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.9772 3.3230 2.7377 34 1 2.8091 2.7753 1.5077 35 1 1.3626 1.8180 3.2474 36 1 1.7050 3.5177 3.6527 37 1 3.5302 2.7744 5.1724 38 1 0.8151 1.4605 5.6300 39 1 2.0532 1.6872 6.8886 40 1 -0.8702 3.8515 5.9436 41 1 0.2201 5.0357 5.1839 42 1 -0.0080 3.4332 4.4436 43 1 -0.6183 6.3084 7.7336 44 1 2.5307 -0.0143 4.4355 45 1 3.7235 0.3513 5.7059 46 1 4.7806 -0.3342 3.5230 47 1 5.2597 1.3002 4.0487 48 1 3.9853 -0.7131 -0.9891 49 1 3.4210 0.5800 -2.0981 50 1 5.8091 0.6604 -2.4232 51 1 6.1375 0.3259 -0.6940 52 1 5.3208 2.9069 -2.0236 53 1 6.3237 2.6530 -0.5677 54 1 3.4863 3.2399 -0.7017 55 1 4.4885 2.9857 0.7545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494195159.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:28 Heat of formation + Delta-G solvation = -77.523746 kcal Electronic energy + Delta-G solvation = -32351.832110 eV Core-core repulsion = 28388.652742 eV Total energy + Delta-G solvation = -3963.179367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.06239 -39.54241 -38.66461 -37.73487 -37.13227 -34.61129 -32.97295 -32.10403 -31.33141 -29.62903 -28.68978 -27.82539 -27.53982 -25.57453 -25.14922 -24.28719 -23.20581 -22.02849 -21.33281 -20.99891 -19.61549 -18.61607 -17.98625 -17.34224 -17.09674 -16.93783 -16.85575 -16.35367 -16.02556 -15.71652 -15.54881 -15.51328 -15.17434 -14.98046 -14.65501 -14.45848 -14.30770 -14.13988 -13.83474 -13.61071 -13.36156 -13.16164 -12.84745 -12.80846 -12.55951 -12.49955 -12.48461 -12.35735 -12.20706 -12.13715 -12.06007 -11.91713 -11.89878 -11.83939 -11.76676 -11.60415 -11.32460 -11.31782 -11.18399 -10.77293 -10.57544 -10.39137 -9.64088 -8.73886 -7.78525 -5.21882 1.47157 1.49523 1.58970 1.64525 2.00961 2.54124 2.71466 3.33567 3.34494 3.60357 3.64488 3.68922 3.78726 3.93573 4.02178 4.10931 4.16002 4.21461 4.24721 4.36345 4.43913 4.47050 4.52443 4.53008 4.55809 4.56054 4.59177 4.70314 4.75090 4.77206 4.84487 4.85262 4.85906 4.89733 4.95118 5.00384 5.06980 5.08194 5.10876 5.13538 5.18101 5.25539 5.29945 5.36140 5.42651 5.48355 5.61349 5.63540 5.67171 5.77946 6.18110 6.35393 6.45330 7.19995 7.20130 7.93994 8.35775 9.24762 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.003056 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.660481 B = 9160.469524 C = 9505.317483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.064 3.936 4 C -0.081 4.081 5 C 0.532 3.468 6 O -0.579 6.579 7 N -0.607 5.607 8 C 0.101 3.899 9 C -0.118 4.118 10 C -0.094 4.094 11 C 0.156 3.844 12 N -0.615 5.615 13 C 0.180 3.820 14 C -0.252 4.252 15 H 0.071 0.929 16 C -0.056 4.056 17 N -0.941 5.941 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.297 1.297 22 C -0.116 4.116 23 C 0.115 3.885 24 C -0.091 4.091 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.122 4.122 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.038 0.962 40 H -0.008 1.008 41 H 0.018 0.982 42 H 0.037 0.963 43 H 0.246 0.754 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.053 0.947 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.042 0.958 52 H 0.089 0.911 53 H 0.062 0.938 54 H 0.104 0.896 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -6.516 -20.296 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.012 4.012 4 C -0.084 4.084 5 C 0.321 3.679 6 O -0.459 6.459 7 N -0.339 5.339 8 C -0.021 4.021 9 C -0.156 4.156 10 C -0.115 4.115 11 C 0.030 3.970 12 N -0.338 5.338 13 C 0.035 3.965 14 C -0.382 4.382 15 H 0.089 0.911 16 C -0.251 4.251 17 N -0.589 5.589 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.225 1.225 22 C -0.154 4.154 23 C -0.007 4.007 24 C -0.128 4.128 25 C -0.163 4.163 26 C -0.157 4.157 27 C -0.160 4.160 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.011 0.989 41 H 0.037 0.963 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.109 0.891 50 H 0.101 0.899 51 H 0.061 0.939 52 H 0.108 0.892 53 H 0.081 0.919 54 H 0.123 0.877 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.157 -7.142 -20.233 22.618 hybrid contribution -0.181 0.825 1.241 1.502 sum 6.975 -6.317 -18.991 21.195 Atomic orbital electron populations 1.22887 0.79590 1.03540 1.00916 1.87930 1.21211 1.28195 1.95588 1.22946 0.90451 0.85322 1.02515 1.21684 0.95050 0.98584 0.93097 1.20718 0.77060 0.84647 0.85438 1.90610 1.47417 1.20904 1.86987 1.48146 1.57806 1.20421 1.07521 1.22355 0.95181 0.83529 1.01000 1.21971 0.97335 1.01962 0.94297 1.21575 0.98355 0.95744 0.95785 1.20884 0.94954 0.84979 0.96202 1.44133 1.37776 1.10369 1.41563 1.20579 0.88982 0.95884 0.91015 1.19549 0.98174 1.04750 1.15774 0.91132 1.25617 0.96008 1.02210 1.01220 1.70279 1.08234 1.28808 1.51562 0.85264 0.78624 0.79479 0.77462 1.19152 1.21824 1.22476 1.21810 0.97885 0.96806 0.98943 1.21554 0.96107 0.99746 0.83314 1.22276 0.96244 0.98891 0.95420 1.22370 0.96143 0.96046 1.01768 1.22137 0.97317 0.95878 1.00356 1.22569 0.98291 0.93299 1.01805 0.89180 0.94039 0.92092 0.91996 0.89428 0.90384 0.87236 0.92646 0.90822 0.92308 0.94308 0.94337 0.98922 0.96287 0.94513 0.94502 0.92587 0.90120 0.90483 0.90697 0.92826 0.89083 0.89871 0.93873 0.89224 0.91877 0.87720 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -9.71 10.10 -148.98 -1.51 -11.21 16 3 C 0.06 1.21 4.42 71.98 0.32 1.53 16 4 C -0.08 -1.67 0.35 -51.85 -0.02 -1.69 16 5 C 0.53 14.87 6.09 87.66 0.53 15.40 16 6 O -0.58 -20.64 15.03 -3.04 -0.05 -20.68 16 7 N -0.61 -15.61 2.90 -818.04 -2.38 -17.99 16 8 C 0.10 2.28 3.90 86.51 0.34 2.61 16 9 C -0.12 -3.28 4.29 30.82 0.13 -3.15 16 10 C -0.09 -2.92 2.35 -10.77 -0.03 -2.95 16 11 C 0.16 6.02 5.14 86.38 0.44 6.47 16 12 N -0.62 -29.44 2.75 -726.93 -2.00 -31.44 16 13 C 0.18 8.51 7.87 127.77 1.01 9.51 16 14 C -0.25 -13.42 9.69 84.03 0.81 -12.61 16 15 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 16 C -0.06 -3.09 5.06 84.86 0.43 -2.66 16 17 N -0.94 -54.97 10.59 21.65 0.23 -54.74 16 18 Si 0.96 44.37 29.58 68.60 2.03 46.39 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 C -0.12 -3.13 5.36 30.67 0.16 -2.97 16 23 C 0.12 3.03 6.44 86.36 0.56 3.58 16 24 C -0.09 -1.86 5.19 31.88 0.17 -1.69 16 25 C -0.13 -2.27 6.58 31.67 0.21 -2.06 16 26 C -0.12 -1.70 6.80 31.32 0.21 -1.48 16 27 C -0.12 -1.83 4.64 31.32 0.15 -1.69 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 1.18 5.27 -2.39 -0.01 1.17 16 32 H 0.09 1.16 8.01 -2.39 -0.02 1.14 16 33 H 0.08 1.68 7.91 -2.39 -0.02 1.66 16 34 H 0.11 2.00 3.20 -2.38 -0.01 1.99 16 35 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.07 2.32 5.88 -2.39 -0.01 2.31 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.45 8.07 -2.39 -0.02 1.43 16 39 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 40 H -0.01 -0.40 7.44 -2.39 -0.02 -0.42 16 41 H 0.02 0.96 7.10 -2.39 -0.02 0.94 16 42 H 0.04 1.43 6.20 -2.39 -0.01 1.42 16 43 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 2.21 7.00 -2.39 -0.02 2.19 16 47 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.45 7.28 -2.39 -0.02 1.43 16 49 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 50 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.04 1.00 8.11 -2.38 -0.02 0.98 16 52 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.10 1.04 7.75 -2.39 -0.02 1.02 16 55 H 0.08 1.24 5.32 -2.39 -0.01 1.23 16 Total: -1.00 -69.36 403.78 3.85 -65.51 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.85 Total: 16.29 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.67 Total: 7.87 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.15 Total: -104.17 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.55 Total: -31.90 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.36 3.85 -65.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494195159.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.015 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds