Wall clock time and date at job start Tue Mar 31 2020 21:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99946 * 2 1 4 4 C 1.50703 * 120.00095 * 180.02562 * 2 1 3 5 5 H 1.08996 * 109.46958 * 4.99701 * 4 2 1 6 6 C 1.53002 * 109.46988 * 244.99622 * 4 2 1 7 7 C 1.50698 * 109.46954 * 174.99656 * 6 4 2 8 8 O 1.21283 * 120.00336 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99832 * 179.97438 * 7 6 4 10 10 C 1.46925 * 120.62940 * 359.72991 * 9 7 6 11 11 C 1.52767 * 109.00516 * 233.57982 * 10 9 7 12 12 C 1.53041 * 109.38558 * 305.58538 * 11 10 9 13 13 C 1.52992 * 109.45201 * 181.25176 * 12 11 10 14 14 N 1.46502 * 109.46976 * 64.94039 * 13 12 11 15 15 C 1.46507 * 120.00111 * 89.99634 * 14 13 12 16 16 C 1.36941 * 120.00266 * 270.00062 * 14 13 12 17 17 H 1.08002 * 119.99684 * 22.10058 * 16 14 13 18 18 C 1.38807 * 120.00052 * 202.10248 * 16 14 13 19 19 N 1.31616 * 120.00041 * 14.15255 * 18 16 14 20 20 Si 1.86800 * 119.99902 * 194.15422 * 18 16 14 21 21 H 1.48501 * 109.47092 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47227 * 120.00142 * 20 18 16 23 23 H 1.48504 * 109.47035 * 240.00310 * 20 18 16 24 24 C 1.53037 * 109.53286 * 61.23850 * 12 11 10 25 25 C 1.46929 * 120.62999 * 180.02562 * 9 7 6 26 26 O 1.42894 * 109.47021 * 124.99960 * 4 2 1 27 27 C 1.42901 * 113.99860 * 269.99574 * 26 4 2 28 28 C 1.53000 * 109.47321 * 180.02562 * 27 26 4 29 29 H 1.08001 * 120.00444 * 359.97438 * 1 2 3 30 30 H 1.08008 * 119.99804 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47621 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47352 * 300.00758 * 3 2 1 33 33 H 1.09006 * 109.46783 * 60.00302 * 3 2 1 34 34 H 1.08996 * 109.46997 * 295.00288 * 6 4 2 35 35 H 1.09008 * 109.47034 * 54.99988 * 6 4 2 36 36 H 1.08998 * 109.59045 * 353.40786 * 10 9 7 37 37 H 1.08990 * 109.59181 * 113.84257 * 10 9 7 38 38 H 1.09001 * 109.56098 * 185.54888 * 11 10 9 39 39 H 1.08998 * 109.38475 * 65.51670 * 11 10 9 40 40 H 1.09004 * 109.45803 * 301.22444 * 12 11 10 41 41 H 1.08998 * 109.47424 * 184.93554 * 13 12 11 42 42 H 1.08996 * 109.47591 * 304.94243 * 13 12 11 43 43 H 1.08998 * 109.46876 * 95.13322 * 15 14 13 44 44 H 1.09000 * 109.47299 * 215.13457 * 15 14 13 45 45 H 1.09000 * 109.46758 * 335.13816 * 15 14 13 46 46 H 0.97000 * 120.00081 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.49860 * 178.68445 * 24 12 11 48 48 H 1.09002 * 109.52757 * 58.60940 * 24 12 11 49 49 H 1.08996 * 109.58361 * 246.15829 * 25 9 7 50 50 H 1.08992 * 109.58779 * 6.44026 * 25 9 7 51 51 H 1.09003 * 109.47197 * 300.00037 * 27 26 4 52 52 H 1.08999 * 109.47267 * 60.00714 * 27 26 4 53 53 H 1.09001 * 109.47369 * 180.02562 * 28 27 26 54 54 H 1.09003 * 109.47157 * 300.00231 * 28 27 26 55 55 H 1.09000 * 109.47572 * 59.99789 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1316 -0.0905 6 6 2.8466 -1.4425 1.3067 7 6 3.5009 -2.7989 1.3601 8 8 3.3557 -3.5788 0.4427 9 7 4.2484 -3.1450 2.4269 10 6 4.4392 -2.2084 3.5427 11 6 5.9355 -2.0408 3.8012 12 6 6.5706 -3.4161 4.0189 13 6 8.0633 -3.2479 4.3088 14 7 8.2372 -2.5341 5.5763 15 6 8.3278 -3.2828 6.8323 16 6 8.3149 -1.1669 5.5871 17 1 7.9058 -0.5963 4.7665 18 6 8.9195 -0.5145 6.6528 19 7 9.6572 -1.1924 7.5064 20 14 8.6863 1.3254 6.8753 21 1 7.8198 1.8495 5.7891 22 1 8.0467 1.5880 8.1896 23 1 10.0074 2.0017 6.8237 24 6 6.3883 -4.2688 2.7612 25 6 4.8931 -4.4636 2.4932 26 8 2.9709 -1.3307 -1.1042 27 6 2.4138 -1.8756 -2.3021 28 6 3.4682 -1.8541 -3.4106 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 3.1351 1.1060 0.0005 32 1 1.8000 1.8767 -0.8899 33 1 1.8001 1.8766 0.8901 34 1 3.6117 -0.6677 1.3550 35 1 2.1658 -1.3340 2.1511 36 1 4.0035 -1.2424 3.2876 37 1 3.9587 -2.6034 4.4377 38 1 6.0860 -1.4260 4.6886 39 1 6.3993 -1.5579 2.9412 40 1 6.0896 -3.9085 4.8642 41 1 8.5330 -4.2291 4.3772 42 1 8.5278 -2.6779 3.5042 43 1 9.3759 -3.4466 7.0828 44 1 7.8482 -2.7147 7.6294 45 1 7.8268 -4.2442 6.7191 46 1 10.0800 -0.7364 8.2509 47 1 6.8612 -5.2398 2.9083 48 1 6.8477 -3.7657 1.9103 49 1 4.4503 -5.0466 3.3007 50 1 4.7544 -4.9861 1.5468 51 1 2.0981 -2.9031 -2.1213 52 1 1.5537 -1.2794 -2.6067 53 1 3.0431 -2.2693 -4.3244 54 1 3.7843 -0.8267 -3.5915 55 1 4.3281 -2.4505 -3.1058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494196394.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:56 Heat of formation + Delta-G solvation = -68.921889 kcal Electronic energy + Delta-G solvation = -30996.947443 eV Core-core repulsion = 27034.141080 eV Total energy + Delta-G solvation = -3962.806363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.34284 -39.70426 -38.69590 -37.04830 -36.10362 -34.49763 -33.02778 -32.39911 -31.95931 -30.83172 -28.45903 -28.21491 -27.85634 -25.63728 -24.53253 -23.91175 -23.65534 -22.46932 -21.18248 -19.89196 -19.74168 -18.61206 -18.04026 -17.81244 -17.03356 -16.81198 -16.57240 -16.25728 -15.69943 -15.52819 -15.33072 -15.09595 -14.99262 -14.83239 -14.73568 -14.48719 -14.16734 -14.00674 -13.87251 -13.72487 -13.40118 -13.19206 -13.12354 -12.96546 -12.79750 -12.73870 -12.58993 -12.53876 -12.48270 -12.19097 -12.12812 -11.98795 -11.95201 -11.91536 -11.79622 -11.74391 -11.24455 -11.12491 -10.73410 -10.56991 -10.45950 -10.07733 -9.59707 -8.68396 -7.75621 -5.22245 1.19124 1.48721 1.50811 1.60067 1.66800 2.07351 2.55960 2.80388 3.37147 3.45633 3.70083 3.86645 3.88733 3.93316 4.01792 4.10085 4.18870 4.22724 4.24825 4.33251 4.38202 4.44920 4.48416 4.50882 4.59001 4.61627 4.71717 4.80052 4.81740 4.84442 4.85349 4.89875 4.90888 4.92645 5.01982 5.06953 5.09430 5.12731 5.13907 5.17046 5.21809 5.24331 5.38138 5.46945 5.63906 5.65246 5.69043 5.73535 5.77929 5.81718 6.35335 6.39605 6.46914 7.20945 7.22303 7.95516 8.40010 9.28062 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.002800 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.920895 B = 9998.442563 C =11196.903014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C -0.113 4.113 4 C 0.143 3.857 5 H 0.062 0.938 6 C -0.133 4.133 7 C 0.515 3.485 8 O -0.576 6.576 9 N -0.610 5.610 10 C 0.112 3.888 11 C -0.120 4.120 12 C -0.092 4.092 13 C 0.154 3.846 14 N -0.616 5.616 15 C 0.178 3.822 16 C -0.243 4.243 17 H 0.079 0.921 18 C -0.061 4.061 19 N -0.944 5.944 20 Si 0.960 3.040 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.300 1.300 24 C -0.117 4.117 25 C 0.117 3.883 26 O -0.387 6.387 27 C 0.062 3.938 28 C -0.146 4.146 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.034 0.966 43 H -0.001 1.001 44 H 0.015 0.985 45 H 0.029 0.971 46 H 0.244 0.756 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.039 0.961 52 H 0.054 0.946 53 H 0.088 0.912 54 H 0.062 0.938 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.625 -0.588 -15.699 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.169 4.169 4 C 0.085 3.915 5 H 0.080 0.920 6 C -0.172 4.172 7 C 0.304 3.696 8 O -0.456 6.456 9 N -0.342 5.342 10 C -0.010 4.010 11 C -0.158 4.158 12 C -0.113 4.113 13 C 0.029 3.971 14 N -0.339 5.339 15 C 0.033 3.967 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.255 4.255 19 N -0.592 5.592 20 Si 0.789 3.211 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.227 1.227 24 C -0.156 4.156 25 C -0.006 4.006 26 O -0.307 6.307 27 C -0.014 4.014 28 C -0.203 4.203 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.103 0.897 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.057 0.943 52 H 0.073 0.927 53 H 0.107 0.893 54 H 0.081 0.919 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.420 -0.887 -16.035 25.200 hybrid contribution 0.406 0.728 0.618 1.038 sum -19.014 -0.159 -15.417 24.479 Atomic orbital electron populations 1.23920 0.94676 1.03043 0.99510 1.22230 0.95829 0.96035 1.01713 1.20732 0.99918 0.93807 1.02480 1.20783 0.90506 0.94291 0.85951 0.91976 1.21883 1.01750 0.94505 0.99095 1.20937 0.78442 0.89436 0.80759 1.90635 1.63189 1.54241 1.37528 1.48262 1.49409 1.16802 1.19771 1.21807 0.96640 0.93626 0.88913 1.21792 0.94517 0.97791 1.01694 1.21568 0.97497 0.95545 0.96684 1.20914 0.94123 0.94902 0.87207 1.44145 1.85030 1.02895 1.01849 1.20497 0.97004 0.91928 0.87307 1.19588 1.29261 0.82968 1.05505 0.90347 1.25751 0.98302 1.01510 0.99913 1.70256 1.35429 1.35851 1.17639 0.85296 0.76957 0.81180 0.77663 1.18451 1.22080 1.22725 1.21823 0.95556 1.00778 0.97423 1.21534 0.92424 0.84146 1.02480 1.87891 1.39400 1.83423 1.20001 1.22473 0.96891 0.96908 0.85174 1.21715 0.98730 1.02612 0.97213 0.86548 0.88000 0.92655 0.91307 0.90446 0.87427 0.85307 0.88101 0.90325 0.90574 0.93507 0.91932 0.93941 0.94777 0.98285 0.96579 0.95226 0.94652 0.89732 0.92920 0.90534 0.90342 0.94295 0.92729 0.89288 0.91918 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 13.95 67.78 0.95 -1.39 16 2 C -0.16 -2.61 5.05 -16.49 -0.08 -2.70 16 3 C -0.11 -1.74 9.69 71.23 0.69 -1.04 16 4 C 0.14 2.99 1.78 29.85 0.05 3.04 16 5 H 0.06 1.38 7.25 -2.39 -0.02 1.36 16 6 C -0.13 -2.68 3.59 29.85 0.11 -2.57 16 7 C 0.51 13.69 7.58 87.66 0.66 14.35 16 8 O -0.58 -18.99 14.83 10.75 0.16 -18.83 16 9 N -0.61 -15.28 2.98 -819.82 -2.44 -17.72 16 10 C 0.11 2.60 6.31 86.22 0.54 3.14 16 11 C -0.12 -3.63 4.60 30.53 0.14 -3.49 16 12 C -0.09 -2.84 2.36 -10.77 -0.03 -2.87 16 13 C 0.15 5.97 5.15 86.38 0.44 6.42 16 14 N -0.62 -29.54 2.80 -726.94 -2.03 -31.57 16 15 C 0.18 8.61 8.98 127.77 1.15 9.76 16 16 C -0.24 -12.65 8.15 84.03 0.69 -11.96 16 17 H 0.08 3.91 6.72 -2.91 -0.02 3.89 16 18 C -0.06 -3.32 5.08 84.86 0.43 -2.89 16 19 N -0.94 -55.63 10.72 21.65 0.23 -55.39 16 20 Si 0.96 44.02 29.58 68.60 2.03 46.05 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 C -0.12 -3.06 5.36 30.66 0.16 -2.89 16 25 C 0.12 2.89 6.43 86.35 0.56 3.45 16 26 O -0.39 -9.75 9.01 -135.19 -1.22 -10.97 16 27 C 0.06 1.31 6.46 71.98 0.46 1.78 16 28 C -0.15 -2.69 10.28 71.98 0.74 -1.95 16 29 H 0.12 1.21 8.05 -2.91 -0.02 1.19 16 30 H 0.10 1.26 7.84 -2.91 -0.02 1.23 16 31 H 0.05 1.00 7.50 -2.39 -0.02 0.98 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.11 2.13 7.20 -2.39 -0.02 2.11 16 35 H 0.13 1.92 7.96 -2.38 -0.02 1.90 16 36 H 0.10 1.90 5.93 -2.39 -0.01 1.88 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 2.74 5.95 -2.39 -0.01 2.73 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.04 1.56 8.07 -2.39 -0.02 1.54 16 42 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 43 H 0.00 -0.06 7.36 -2.39 -0.02 -0.08 16 44 H 0.02 0.82 7.31 -2.39 -0.02 0.80 16 45 H 0.03 1.20 8.03 -2.39 -0.02 1.19 16 46 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.08 2.11 7.00 -2.39 -0.02 2.09 16 51 H 0.04 0.90 8.09 -2.39 -0.02 0.88 16 52 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 54 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 55 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -67.24 426.35 5.22 -62.02 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.82 Total: 18.24 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 7.67 Total: 8.18 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -4.24 Total: -104.69 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.06 Total: -29.80 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.24 5.22 -62.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494196394.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.904 kcal (2) G-P(sol) polarization free energy of solvation -67.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds