Wall clock time and date at job start Tue Mar 31 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00106 * 2 1 4 4 C 1.52993 * 109.47554 * 149.99999 * 3 2 1 5 5 C 1.52997 * 109.47363 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47230 * 299.99826 * 5 4 3 7 7 C 1.52997 * 109.47230 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47152 * 175.00340 * 7 6 5 9 9 O 1.21281 * 120.00278 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99903 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99966 * 184.46392 * 10 8 7 12 12 C 1.52999 * 110.43539 * 58.79498 * 11 10 8 13 13 N 1.46501 * 109.46652 * 61.51027 * 12 11 10 14 14 C 1.36936 * 119.99948 * 174.88928 * 13 12 11 15 15 H 1.08003 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00692 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99223 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00630 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46997 * 90.00136 * 18 16 14 20 20 H 1.48502 * 109.47306 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47202 * 330.00141 * 18 16 14 22 22 C 1.54890 * 110.48489 * 296.11275 * 11 10 8 23 23 C 1.54882 * 102.75110 * 279.26196 * 22 11 10 24 24 C 1.54265 * 104.20031 * 322.06018 * 23 22 11 25 25 C 1.53877 * 106.59334 * 23.60765 * 24 23 22 26 26 C 1.53004 * 109.47037 * 60.00111 * 6 5 4 27 27 C 1.52998 * 109.46713 * 299.99791 * 26 6 5 28 28 H 1.09000 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47492 * 300.00242 * 1 2 3 30 30 H 1.09000 * 109.46976 * 60.00312 * 1 2 3 31 31 H 1.09006 * 109.47193 * 29.99577 * 3 2 1 32 32 H 1.09006 * 109.47216 * 59.99591 * 4 3 2 33 33 H 1.09001 * 109.46979 * 299.99837 * 4 3 2 34 34 H 1.09000 * 109.47373 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46910 * 60.00447 * 5 4 3 36 36 H 1.08997 * 109.47172 * 300.00191 * 6 5 4 37 37 H 1.09005 * 109.47315 * 54.99848 * 7 6 5 38 38 H 1.09007 * 109.47342 * 294.99909 * 7 6 5 39 39 H 0.97001 * 119.99783 * 4.74261 * 10 8 7 40 40 H 1.09002 * 109.47126 * 181.50771 * 12 11 10 41 41 H 1.08990 * 109.47526 * 301.51050 * 12 11 10 42 42 H 0.96996 * 120.00289 * 354.88222 * 13 12 11 43 43 H 0.96998 * 119.99825 * 179.97438 * 17 16 14 44 44 H 1.09002 * 110.75489 * 37.58051 * 22 11 10 45 45 H 1.09007 * 110.75719 * 160.95113 * 22 11 10 46 46 H 1.08998 * 110.49246 * 203.37660 * 23 22 11 47 47 H 1.09000 * 110.48541 * 80.73634 * 23 22 11 48 48 H 1.09000 * 110.03218 * 264.32662 * 24 23 22 49 49 H 1.09000 * 110.03682 * 142.88726 * 24 23 22 50 50 H 1.09011 * 110.03105 * 240.71665 * 25 24 23 51 51 H 1.08998 * 110.03159 * 119.28962 * 25 24 23 52 52 H 1.08997 * 109.47075 * 60.00020 * 26 6 5 53 53 H 1.09002 * 109.46784 * 180.02562 * 26 6 5 54 54 H 1.08997 * 109.47537 * 299.99946 * 27 26 6 55 55 H 1.09008 * 109.46887 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2634 0.7212 5 6 3.9814 2.6609 0.7206 6 6 4.1890 3.1262 -0.7220 7 6 4.8121 4.5235 -0.7226 8 6 5.1296 4.9314 -2.1382 9 8 4.8822 4.1784 -3.0562 10 7 5.6894 6.1326 -2.3840 11 6 5.9081 6.5700 -3.7649 12 6 4.5832 6.6089 -4.5292 13 7 3.6807 7.5717 -3.8930 14 6 2.4693 7.8558 -4.4648 15 1 2.1794 7.3703 -5.3850 16 6 1.6139 8.7677 -3.8620 17 7 1.9670 9.3589 -2.7403 18 14 -0.0383 9.1557 -4.6423 19 1 -1.0657 8.2211 -4.1166 20 1 -0.4250 10.5515 -4.3147 21 1 0.0622 9.0028 -6.1160 22 6 6.9198 5.6367 -4.4753 23 6 8.2855 6.1694 -3.9755 24 6 8.0993 7.7000 -3.9253 25 6 6.5877 7.9546 -3.7914 26 6 2.8403 3.1684 -1.4433 27 6 2.2178 1.7708 -1.4427 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.3449 1.9995 0.5138 32 1 4.0242 0.5694 0.2074 33 1 3.2111 0.9315 1.7489 34 1 4.9421 2.6310 1.2348 35 1 3.3163 3.3551 1.2342 36 1 4.8541 2.4320 -1.2355 37 1 5.7291 4.5127 -0.1332 38 1 4.1095 5.2349 -0.2884 39 1 5.9511 6.7057 -1.6464 40 1 4.7674 6.9100 -5.5605 41 1 4.1267 5.6193 -4.5156 42 1 3.9412 8.0079 -3.0668 43 1 1.3694 9.9964 -2.3191 44 1 6.7726 4.6016 -4.1671 45 1 6.8403 5.7336 -5.5581 46 1 9.0778 5.9043 -4.6755 47 1 8.5067 5.7793 -2.9820 48 1 8.4742 8.1520 -4.8436 49 1 8.6251 8.1121 -3.0640 50 1 6.2290 8.5303 -4.6448 51 1 6.3799 8.4903 -2.8652 52 1 2.1752 3.8626 -0.9297 53 1 2.9883 3.4994 -2.4712 54 1 2.8829 1.0765 -1.9562 55 1 1.2571 1.8007 -1.9570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495215209.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:11 Heat of formation + Delta-G solvation = -124.513521 kcal Electronic energy + Delta-G solvation = -31503.696699 eV Core-core repulsion = 27538.479702 eV Total energy + Delta-G solvation = -3965.216997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45591 -40.24447 -38.87130 -37.35688 -36.18253 -34.35403 -33.20905 -32.61487 -31.71795 -29.85147 -29.60029 -28.17181 -26.76889 -26.17306 -24.07095 -23.67307 -22.91913 -21.74952 -20.92577 -20.63022 -20.32163 -19.17363 -17.88888 -17.58158 -17.14066 -16.72480 -16.53216 -16.41700 -16.07520 -15.79600 -15.73401 -15.19645 -15.07736 -14.95080 -14.82601 -14.44704 -14.21964 -14.07015 -13.77163 -13.55519 -13.24721 -13.19142 -12.97272 -12.82392 -12.82113 -12.49425 -12.43457 -12.34611 -12.18211 -12.06595 -12.05151 -11.91930 -11.76792 -11.75833 -11.61598 -11.54419 -11.44992 -11.26872 -11.18994 -10.98825 -10.50385 -10.21976 -9.77689 -8.94230 -7.95709 -5.21515 1.43435 1.44335 1.52825 1.88968 2.41187 2.54421 2.80015 3.36951 3.54411 3.73140 3.74392 3.75975 3.86193 3.92494 4.02824 4.14525 4.22410 4.28329 4.39002 4.45439 4.46505 4.48633 4.52841 4.54368 4.56953 4.59276 4.61281 4.70513 4.74484 4.81078 4.83410 4.85954 4.90692 4.95325 4.97604 5.06959 5.11351 5.14743 5.15138 5.16037 5.21633 5.23250 5.30617 5.30996 5.38587 5.46403 5.52048 5.53410 5.56585 5.86778 6.26573 6.27040 6.80901 7.34660 7.53295 8.09225 8.38750 9.27116 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.003912 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.208737 B = 7154.857916 C = 9886.560276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.089 3.911 4 C -0.109 4.109 5 C -0.104 4.104 6 C -0.062 4.062 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.568 6.568 10 N -0.705 5.705 11 C 0.175 3.825 12 C 0.149 3.851 13 N -0.728 5.728 14 C -0.244 4.244 15 H 0.061 0.939 16 C -0.065 4.065 17 N -0.961 5.961 18 Si 0.964 3.036 19 H -0.291 1.291 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.130 4.130 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.407 0.593 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.378 0.622 43 H 0.251 0.749 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.059 0.941 51 H 0.068 0.932 52 H 0.048 0.952 53 H 0.051 0.949 54 H 0.059 0.941 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.503 -12.606 9.334 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.031 3.969 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.081 4.081 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.448 6.448 10 N -0.357 5.357 11 C 0.088 3.912 12 C 0.021 3.979 13 N -0.370 5.370 14 C -0.376 4.376 15 H 0.079 0.921 16 C -0.258 4.258 17 N -0.612 5.612 18 Si 0.794 3.206 19 H -0.218 1.218 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.168 4.168 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.143 0.857 38 H 0.111 0.889 39 H 0.243 0.757 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.067 0.933 53 H 0.070 0.930 54 H 0.078 0.922 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.300 -13.293 8.538 18.860 hybrid contribution -1.629 1.115 -0.367 2.008 sum 8.671 -12.178 8.171 17.037 Atomic orbital electron populations 1.22936 0.80189 1.03692 1.00353 1.87852 1.20861 1.28621 1.95152 1.22248 0.95855 0.83905 0.94854 1.21542 0.94298 0.97966 1.00847 1.21545 1.02275 0.95441 0.94871 1.20831 0.95635 0.94996 0.96627 1.21782 1.04060 0.98544 0.92807 1.21127 0.75694 0.80958 0.92372 1.90604 1.53349 1.53064 1.47741 1.45885 1.62928 1.19072 1.07805 1.21184 0.93096 0.94831 0.82114 1.21065 0.90410 0.92052 0.94385 1.42252 1.16883 1.49438 1.28464 1.19516 0.94734 1.18506 1.04880 0.92145 1.25358 1.01833 1.00214 0.98359 1.69772 1.38079 1.32862 1.20456 0.85276 0.80457 0.76795 0.78067 1.21815 1.21579 1.20049 1.22747 0.94773 0.99106 0.99591 1.22282 0.95838 0.94995 1.01583 1.22129 0.93870 0.96336 1.02877 1.22297 0.96081 0.94567 1.02437 1.21561 0.96673 0.95819 1.01093 1.21914 1.00328 0.96945 0.97648 0.88203 0.93045 0.94500 0.91901 0.91572 0.90006 0.88799 0.91160 0.91402 0.85710 0.88874 0.75701 0.96648 0.96934 0.78937 0.93987 0.91642 0.91455 0.90262 0.91116 0.91069 0.90061 0.92233 0.91343 0.93315 0.93048 0.92233 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.68 16 2 O -0.41 -9.82 10.35 -148.98 -1.54 -11.36 16 3 C 0.09 2.06 2.61 30.59 0.08 2.14 16 4 C -0.11 -2.09 5.57 30.59 0.17 -1.92 16 5 C -0.10 -1.83 5.20 30.59 0.16 -1.67 16 6 C -0.06 -1.49 1.84 -10.80 -0.02 -1.51 16 7 C -0.13 -3.09 5.18 29.85 0.15 -2.93 16 8 C 0.51 16.14 6.91 87.66 0.61 16.74 16 9 O -0.57 -22.12 10.61 -3.03 -0.03 -22.16 16 10 N -0.71 -20.87 4.84 -418.07 -2.02 -22.89 16 11 C 0.17 5.73 0.39 4.68 0.00 5.73 16 12 C 0.15 6.57 4.89 86.38 0.42 7.00 16 13 N -0.73 -37.63 5.26 -343.46 -1.81 -39.44 16 14 C -0.24 -14.18 9.99 84.03 0.84 -13.34 16 15 H 0.06 3.52 7.83 -2.91 -0.02 3.49 16 16 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 17 N -0.96 -57.81 13.06 21.65 0.28 -57.53 16 18 Si 0.96 47.16 29.55 68.60 2.03 49.18 16 19 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 C -0.12 -3.55 5.71 31.88 0.18 -3.37 16 23 C -0.11 -2.30 6.79 31.67 0.21 -2.09 16 24 C -0.11 -2.42 6.80 31.32 0.21 -2.21 16 25 C -0.12 -3.38 5.50 31.32 0.17 -3.21 16 26 C -0.11 -3.47 4.95 30.59 0.15 -3.32 16 27 C -0.13 -3.61 5.54 30.59 0.17 -3.44 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.04 0.71 7.87 -2.39 -0.02 0.69 16 31 H 0.06 1.40 7.79 -2.38 -0.02 1.38 16 32 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 37 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.41 9.92 8.28 -92.71 -0.77 9.15 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.01 0.64 6.29 -2.39 -0.02 0.62 16 42 H 0.38 19.92 7.26 -92.71 -0.67 19.24 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.06 2.10 6.36 -2.39 -0.02 2.09 16 45 H 0.07 1.97 8.06 -2.38 -0.02 1.95 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.06 2.02 7.84 -2.38 -0.02 2.00 16 51 H 0.07 2.00 7.76 -2.39 -0.02 1.98 16 52 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.05 2.00 5.95 -2.39 -0.01 1.98 16 54 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 55 H 0.05 1.42 7.87 -2.38 -0.02 1.40 16 Total: -1.00 -71.17 416.68 1.53 -69.63 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.58 Total: 43.56 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.21 Total: -9.00 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -3.55 Total: -119.86 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.57 Total: -33.51 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -71.17 1.53 -69.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495215209.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.879 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds