Wall clock time and date at job start Tue Mar 31 2020 22:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00149 * 2 1 4 4 C 1.52999 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.50702 * 110.43356 * 300.70257 * 4 3 2 6 6 O 1.21277 * 119.99778 * 237.46238 * 5 4 3 7 7 N 1.34767 * 120.00104 * 57.46044 * 5 4 3 8 8 C 1.46495 * 120.00388 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47866 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47630 * 179.97438 * 9 8 7 11 11 C 1.53038 * 109.45981 * 295.03145 * 10 9 8 12 12 C 1.53188 * 109.31298 * 178.60017 * 11 10 9 13 13 N 1.46925 * 108.76455 * 54.65114 * 12 11 10 14 14 C 1.36947 * 120.62767 * 126.36225 * 13 12 11 15 15 H 1.07998 * 119.99701 * 208.01733 * 14 13 12 16 16 C 1.38806 * 119.99954 * 28.02423 * 14 13 12 17 17 N 1.31616 * 120.00086 * 17.52507 * 16 14 13 18 18 Si 1.86798 * 120.00084 * 197.52239 * 16 14 13 19 19 H 1.48498 * 109.47168 * 94.06450 * 18 16 14 20 20 H 1.48492 * 109.47427 * 214.06665 * 18 16 14 21 21 H 1.48505 * 109.47160 * 334.06914 * 18 16 14 22 22 C 1.46928 * 118.74373 * 306.38749 * 13 12 11 23 23 C 1.53039 * 109.45723 * 174.97563 * 10 9 8 24 24 C 1.54882 * 110.59977 * 63.32131 * 4 3 2 25 25 C 1.54889 * 102.74910 * 156.67534 * 24 4 3 26 26 C 1.54264 * 104.19517 * 322.05488 * 25 24 4 27 27 C 1.53879 * 106.59700 * 23.61370 * 26 25 24 28 28 H 1.08997 * 109.47047 * 299.99567 * 1 2 3 29 29 H 1.09000 * 109.47761 * 59.99901 * 1 2 3 30 30 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46857 * 60.00259 * 3 2 1 32 32 H 1.08999 * 109.46962 * 300.00835 * 3 2 1 33 33 H 0.97005 * 120.00409 * 359.97438 * 7 5 4 34 34 H 1.09004 * 109.47163 * 59.99642 * 8 7 5 35 35 H 1.08998 * 109.47476 * 300.00262 * 8 7 5 36 36 H 1.08998 * 109.46909 * 300.00759 * 9 8 7 37 37 H 1.09004 * 109.46900 * 59.99630 * 9 8 7 38 38 H 1.08997 * 109.45783 * 55.00364 * 10 9 8 39 39 H 1.09000 * 109.49657 * 298.56361 * 11 10 9 40 40 H 1.08996 * 109.49811 * 58.66075 * 11 10 9 41 41 H 1.09002 * 109.59923 * 294.86901 * 12 11 10 42 42 H 1.08996 * 109.70769 * 174.50523 * 12 11 10 43 43 H 0.97000 * 120.00206 * 180.02562 * 17 16 14 44 44 H 1.09003 * 109.58252 * 293.82104 * 22 13 12 45 45 H 1.08993 * 109.70551 * 173.46528 * 22 13 12 46 46 H 1.09002 * 109.49784 * 301.33457 * 23 10 9 47 47 H 1.08998 * 109.50097 * 61.40526 * 23 10 9 48 48 H 1.09002 * 110.75734 * 274.98955 * 24 4 3 49 49 H 1.09002 * 110.75997 * 38.36151 * 24 4 3 50 50 H 1.09002 * 110.48921 * 203.37950 * 25 24 4 51 51 H 1.09000 * 110.48610 * 80.73708 * 25 24 4 52 52 H 1.08993 * 110.03796 * 264.32748 * 26 25 24 53 53 H 1.09008 * 110.03058 * 142.89448 * 26 25 24 54 54 H 1.09003 * 110.02879 * 240.71086 * 27 26 25 55 55 H 1.09005 * 110.03410 * 119.28292 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0035 0.4241 1.2133 6 8 4.7877 0.9356 1.9841 7 7 3.5506 -0.8243 1.4423 8 6 4.0059 -1.5639 2.6220 9 6 3.3454 -2.9438 2.6454 10 6 3.8215 -3.7164 3.8772 11 6 5.3231 -3.9875 3.7600 12 6 5.8030 -4.7304 5.0108 13 7 4.9840 -5.9374 5.1870 14 6 5.5726 -7.1672 5.3159 15 1 5.0441 -8.0545 4.9999 16 6 6.8482 -7.2733 5.8528 17 7 7.3554 -6.2760 6.5460 18 14 7.8449 -8.8313 5.5915 19 1 8.7213 -8.6651 4.4043 20 1 8.6806 -9.0914 6.7911 21 1 6.9252 -9.9763 5.3714 22 6 3.5215 -5.8001 5.2217 23 6 3.0674 -5.0449 3.9686 24 6 4.0267 0.4930 -1.2964 25 6 5.4892 0.9890 -1.4153 26 6 5.4299 2.4575 -0.9465 27 6 4.1876 2.5819 -0.0470 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 2.9230 -1.2334 0.8259 34 1 3.7321 -1.0150 3.5230 35 1 5.0890 -1.6799 2.5825 36 1 2.2623 -2.8274 2.6852 37 1 3.6189 -3.4929 1.7444 38 1 3.6278 -3.1265 4.7731 39 1 5.5147 -4.5985 2.8779 40 1 5.8577 -3.0418 3.6713 41 1 5.6954 -4.0854 5.8829 42 1 6.8490 -5.0127 4.8920 43 1 8.2470 -6.3500 6.9209 44 1 3.2280 -5.2423 6.1110 45 1 3.0601 -6.7873 5.2408 46 1 1.9963 -4.8519 4.0284 47 1 3.2800 -5.6456 3.0843 48 1 3.9940 -0.5915 -1.1917 49 1 3.4380 0.8172 -2.1545 50 1 5.8285 0.9322 -2.4496 51 1 6.1433 0.4073 -0.7657 52 1 5.3360 3.1206 -1.8065 53 1 6.3275 2.7051 -0.3798 54 1 3.4909 3.3054 -0.4705 55 1 4.4823 2.8899 0.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495521712.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:46 Heat of formation + Delta-G solvation = -110.312634 kcal Electronic energy + Delta-G solvation = -30806.086670 eV Core-core repulsion = 26841.485470 eV Total energy + Delta-G solvation = -3964.601200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.59585 -39.64128 -38.78709 -37.83770 -36.59752 -35.04661 -33.13025 -31.87685 -31.49691 -30.11633 -29.49239 -27.55106 -26.90083 -25.30409 -24.73203 -23.83105 -22.95664 -22.11269 -21.37443 -20.72150 -20.14141 -18.70552 -18.08519 -17.30374 -17.13155 -16.89585 -16.65510 -16.37129 -16.13178 -15.92011 -15.64530 -15.30279 -15.23993 -15.00038 -14.82451 -14.41684 -14.24630 -14.16695 -13.91555 -13.81547 -13.28566 -13.05999 -12.92687 -12.75143 -12.58027 -12.47110 -12.38317 -12.34955 -12.20887 -12.17044 -12.03367 -11.97133 -11.89040 -11.79098 -11.69164 -11.53084 -11.34083 -11.09572 -10.99926 -10.74940 -10.53796 -10.51160 -9.98765 -8.67971 -7.87328 -5.33048 1.45047 1.46678 1.56042 1.64690 2.23525 2.50736 2.73941 3.26496 3.50702 3.57929 3.71364 3.78026 3.86237 3.94110 4.00185 4.15752 4.24417 4.29527 4.31152 4.42378 4.50503 4.54718 4.55276 4.57900 4.62770 4.64971 4.67566 4.73004 4.74036 4.78612 4.80970 4.88589 4.94433 4.98100 5.03067 5.04090 5.05704 5.10715 5.14398 5.26388 5.29229 5.29706 5.34261 5.40927 5.44194 5.46670 5.55568 5.57963 5.66404 5.78629 6.18016 6.39078 6.67845 7.14553 7.34826 7.87307 8.39247 9.18874 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002315 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.035172 B =12093.755160 C =13021.740065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.080 3.920 4 C -0.081 4.081 5 C 0.519 3.481 6 O -0.590 6.590 7 N -0.706 5.706 8 C 0.121 3.879 9 C -0.103 4.103 10 C -0.070 4.070 11 C -0.123 4.123 12 C 0.177 3.823 13 N -0.612 5.612 14 C -0.261 4.261 15 H 0.068 0.932 16 C -0.056 4.056 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.265 1.265 22 C 0.137 3.863 23 C -0.112 4.112 24 C -0.096 4.096 25 C -0.131 4.131 26 C -0.120 4.120 27 C -0.106 4.106 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.417 0.583 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.056 0.944 41 H -0.011 1.011 42 H 0.047 0.953 43 H 0.249 0.751 44 H 0.009 0.991 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.087 0.913 51 H 0.037 0.963 52 H 0.089 0.911 53 H 0.049 0.951 54 H 0.099 0.901 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 18.235 -21.260 32.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.003 3.997 4 C -0.084 4.084 5 C 0.306 3.694 6 O -0.471 6.471 7 N -0.360 5.360 8 C -0.003 4.003 9 C -0.141 4.141 10 C -0.089 4.089 11 C -0.162 4.162 12 C 0.051 3.949 13 N -0.335 5.335 14 C -0.391 4.391 15 H 0.086 0.914 16 C -0.251 4.251 17 N -0.584 5.584 18 Si 0.796 3.204 19 H -0.214 1.214 20 H -0.222 1.222 21 H -0.189 1.189 22 C 0.012 3.988 23 C -0.151 4.151 24 C -0.134 4.134 25 C -0.169 4.169 26 C -0.157 4.157 27 C -0.144 4.144 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.257 0.743 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.007 0.993 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.123 0.877 50 H 0.106 0.894 51 H 0.056 0.944 52 H 0.108 0.892 53 H 0.067 0.933 54 H 0.118 0.882 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.137 18.388 -20.623 31.505 hybrid contribution 0.801 -0.785 0.688 1.315 sum -14.336 17.603 -19.935 30.213 Atomic orbital electron populations 1.22896 0.79038 1.03931 1.00794 1.87665 1.21601 1.27823 1.95564 1.22526 0.89619 0.85359 1.02168 1.21755 0.95625 0.97231 0.93796 1.20881 0.79855 0.81852 0.86839 1.90663 1.36903 1.69524 1.49997 1.46068 1.47409 1.15301 1.27183 1.21307 0.98615 0.92504 0.87915 1.21662 1.01099 0.92939 0.98405 1.20894 0.94281 0.96092 0.97669 1.22077 0.96687 0.98869 0.98591 1.20551 0.95319 0.86332 0.92681 1.44353 1.01229 1.03595 1.84372 1.19563 0.99650 0.86375 1.33524 0.91428 1.25847 1.00951 1.00615 0.97647 1.70212 1.16871 1.34296 1.37043 0.85239 0.78657 0.79827 0.76679 1.21357 1.22226 1.18947 1.21107 0.83927 0.98222 0.95573 1.21890 0.99537 0.95469 0.98198 1.22524 0.95864 0.99922 0.95095 1.22421 0.96656 0.96042 1.01766 1.22088 0.97267 0.96968 0.99388 1.22093 0.97553 0.93732 1.00975 0.94026 0.92392 0.88536 0.93277 0.89102 0.74295 0.93082 0.93335 0.89308 0.90740 0.92413 0.93032 0.92521 0.99271 0.93418 0.94226 0.97263 0.92772 0.89609 0.92366 0.91366 0.87658 0.89401 0.94379 0.89203 0.93252 0.88248 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -5.22 7.91 -148.98 -1.18 -6.40 16 3 C 0.08 0.97 4.71 71.98 0.34 1.31 16 4 C -0.08 -1.37 0.62 -51.86 -0.03 -1.40 16 5 C 0.52 13.48 6.30 87.66 0.55 14.03 16 6 O -0.59 -20.75 15.44 -3.02 -0.05 -20.80 16 7 N -0.71 -16.55 5.07 -463.08 -2.35 -18.90 16 8 C 0.12 3.28 5.43 86.38 0.47 3.75 16 9 C -0.10 -2.48 4.80 30.59 0.15 -2.33 16 10 C -0.07 -2.23 2.15 -10.77 -0.02 -2.25 16 11 C -0.12 -4.85 5.14 30.67 0.16 -4.69 16 12 C 0.18 9.05 5.31 86.36 0.46 9.51 16 13 N -0.61 -31.94 2.99 -699.10 -2.09 -34.04 16 14 C -0.26 -14.83 9.58 84.03 0.81 -14.02 16 15 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 16 C -0.06 -3.22 4.90 84.86 0.42 -2.80 16 17 N -0.94 -57.97 11.22 21.65 0.24 -57.73 16 18 Si 0.97 46.25 29.59 68.60 2.03 48.28 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.14 5.77 6.51 86.36 0.56 6.33 16 23 C -0.11 -3.59 5.36 30.67 0.16 -3.43 16 24 C -0.10 -1.34 5.59 31.88 0.18 -1.16 16 25 C -0.13 -2.11 6.61 31.67 0.21 -1.90 16 26 C -0.12 -1.84 6.80 31.32 0.21 -1.63 16 27 C -0.11 -1.72 5.73 31.32 0.18 -1.54 16 28 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.42 7.98 6.20 -92.70 -0.57 7.40 16 34 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.05 1.54 6.53 -2.39 -0.02 1.53 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.06 2.13 6.50 -2.39 -0.02 2.11 16 41 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.05 2.77 6.06 -2.39 -0.01 2.75 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 45 H 0.05 2.21 7.94 -2.39 -0.02 2.19 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 1.05 7.81 -2.39 -0.02 1.03 16 49 H 0.11 0.93 8.06 -2.39 -0.02 0.91 16 50 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 54 H 0.10 0.99 7.84 -2.39 -0.02 0.97 16 55 H 0.06 1.30 6.89 -2.38 -0.02 1.28 16 Total: -1.00 -74.08 416.68 2.91 -71.17 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.26 Total: 19.18 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 6.04 Total: -0.76 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -4.20 Total: -110.67 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.23 Total: -27.20 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.08 2.91 -71.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495521712.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.145 kcal (2) G-P(sol) polarization free energy of solvation -74.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds