Wall clock time and date at job start Tue Mar 31 2020 22:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99830 * 2 1 4 4 C 1.53000 * 109.46806 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46806 * 177.47501 * 4 3 2 6 6 C 1.50701 * 115.55511 * 303.90096 * 5 4 3 7 7 O 1.21277 * 119.99699 * 112.60375 * 6 5 4 8 8 N 1.34778 * 119.99843 * 292.61262 * 6 5 4 9 9 C 1.46921 * 120.62687 * 174.40736 * 8 6 5 10 10 C 1.53194 * 108.77419 * 233.62718 * 9 8 6 11 11 C 1.53047 * 109.31208 * 305.36884 * 10 9 8 12 12 C 1.52997 * 109.45911 * 181.38775 * 11 10 9 13 13 C 1.52993 * 109.47291 * 174.99965 * 12 11 10 14 14 N 1.46496 * 109.47433 * 179.97438 * 13 12 11 15 15 C 1.46498 * 120.00191 * 270.00125 * 14 13 12 16 16 C 1.36942 * 120.00188 * 89.99890 * 14 13 12 17 17 H 1.08004 * 119.99388 * 22.40744 * 16 14 13 18 18 C 1.38800 * 120.00276 * 202.40513 * 16 14 13 19 19 N 1.31627 * 120.00190 * 11.90568 * 18 16 14 20 20 Si 1.86800 * 120.00257 * 191.90867 * 18 16 14 21 21 H 1.48500 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47375 * 120.00075 * 20 18 16 23 23 H 1.48504 * 109.47078 * 240.00334 * 20 18 16 24 24 C 1.53039 * 109.53694 * 61.36379 * 11 10 9 25 25 C 1.46926 * 120.62857 * 354.42433 * 8 6 5 26 26 C 1.53006 * 117.49929 * 89.57028 * 5 4 3 27 27 C 1.53001 * 117.49815 * 158.22716 * 5 4 3 28 28 H 1.09008 * 109.46941 * 60.00117 * 1 2 3 29 29 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47537 * 300.00218 * 1 2 3 31 31 H 1.08994 * 109.47017 * 59.99361 * 3 2 1 32 32 H 1.08999 * 109.46879 * 299.99321 * 3 2 1 33 33 H 1.08993 * 109.47170 * 57.47651 * 4 3 2 34 34 H 1.09001 * 109.46802 * 297.47587 * 4 3 2 35 35 H 1.09004 * 109.58467 * 113.84365 * 9 8 6 36 36 H 1.09002 * 109.70971 * 353.48590 * 9 8 6 37 37 H 1.09000 * 109.50138 * 185.41672 * 10 9 8 38 38 H 1.08994 * 109.49879 * 65.31872 * 10 9 8 39 39 H 1.09000 * 109.45459 * 301.34203 * 11 10 9 40 40 H 1.09005 * 109.46902 * 295.00144 * 12 11 10 41 41 H 1.09001 * 109.47448 * 54.99372 * 12 11 10 42 42 H 1.09005 * 109.47294 * 299.99939 * 13 12 11 43 43 H 1.09001 * 109.47359 * 59.99352 * 13 12 11 44 44 H 1.09002 * 109.47370 * 95.10030 * 15 14 13 45 45 H 1.09000 * 109.47426 * 215.10198 * 15 14 13 46 46 H 1.09004 * 109.47197 * 335.09875 * 15 14 13 47 47 H 0.96993 * 120.00019 * 179.97438 * 19 18 16 48 48 H 1.08999 * 109.49628 * 58.58638 * 24 11 10 49 49 H 1.09000 * 109.49484 * 178.68276 * 24 11 10 50 50 H 1.08994 * 109.58677 * 246.15542 * 25 8 6 51 51 H 1.08998 * 109.58916 * 6.58862 * 25 8 6 52 52 H 1.08992 * 117.50329 * 215.00081 * 26 5 4 53 53 H 1.09010 * 117.49485 * 0.02647 * 26 5 4 54 54 H 1.09007 * 117.49907 * 359.97438 * 27 5 4 55 55 H 1.09001 * 117.49992 * 144.99714 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1575 2.5810 -0.0642 6 6 3.7247 3.4331 -1.2294 7 8 3.0548 4.4259 -1.0386 8 7 4.0820 3.0918 -2.4833 9 6 3.5678 3.8405 -3.6381 10 6 2.9248 2.8544 -4.6184 11 6 3.9371 1.7638 -4.9764 12 6 3.3098 0.7964 -5.9821 13 6 4.3596 -0.2202 -6.4349 14 7 3.7588 -1.1469 -7.3974 15 6 3.1227 -2.3802 -6.9279 16 6 3.7917 -0.8603 -8.7361 17 1 4.5374 -0.1827 -9.1250 18 6 2.8668 -1.4406 -9.5930 19 7 1.8221 -2.0737 -9.1029 20 14 3.1047 -1.3233 -11.4421 21 1 4.3484 -0.5660 -11.7341 22 1 3.2114 -2.6891 -12.0152 23 1 1.9440 -0.6218 -12.0470 24 6 4.3335 0.9985 -3.7118 25 6 4.9926 1.9636 -2.7213 26 6 4.4408 3.2893 1.2622 27 6 5.5982 2.7356 0.4273 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8536 0.6054 -0.8673 34 1 3.8605 0.6832 0.9109 35 1 4.3887 4.3621 -4.1303 36 1 2.8228 4.5633 -3.3055 37 1 2.6251 3.3838 -5.5229 38 1 2.0490 2.4000 -4.1553 39 1 4.8230 2.2213 -5.4169 40 1 2.4766 0.2737 -5.5123 41 1 2.9480 1.3543 -6.8459 42 1 5.1928 0.3025 -6.9047 43 1 4.7214 -0.7781 -5.5711 44 1 2.0511 -2.2160 -6.8142 45 1 3.2933 -3.1760 -7.6530 46 1 3.5503 -2.6666 -5.9670 47 1 1.1756 -2.4789 -9.7017 48 1 3.4444 0.5616 -3.2572 49 1 5.0366 0.2070 -3.9711 50 1 5.9296 2.3321 -3.1387 51 1 5.1870 1.4464 -1.7817 52 1 4.3141 4.3714 1.2920 53 1 4.1843 2.7601 2.1801 54 1 6.1026 1.8425 0.7964 55 1 6.2329 3.4535 -0.0921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496504696.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:14 Heat of formation + Delta-G solvation = -64.728926 kcal Electronic energy + Delta-G solvation = -31166.203025 eV Core-core repulsion = 27203.578483 eV Total energy + Delta-G solvation = -3962.624542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.72360 -39.44356 -38.83500 -37.73306 -37.41582 -35.13495 -33.14096 -32.32537 -31.88060 -30.21301 -27.91895 -27.57961 -26.82754 -25.17162 -24.33119 -24.12335 -23.28903 -22.95606 -21.69883 -21.05154 -19.54683 -18.70233 -17.87318 -17.51039 -17.36002 -16.89025 -16.79029 -16.29570 -15.96288 -15.79634 -15.63371 -15.53394 -15.16520 -15.02018 -14.91199 -14.48520 -14.21193 -14.11649 -14.00185 -13.66506 -13.37032 -13.26333 -12.98789 -12.87706 -12.76804 -12.58960 -12.50231 -12.44353 -12.40600 -12.25085 -12.15682 -12.09997 -12.00077 -11.68015 -11.58901 -11.52227 -11.33431 -11.09127 -11.04053 -10.72841 -10.64919 -10.62642 -9.67512 -8.74328 -7.80515 -5.27986 1.45538 1.46670 1.48423 1.57015 1.94594 2.50722 2.52277 2.88669 3.32729 3.40573 3.65386 3.69266 3.79395 3.89893 3.90960 3.93679 4.02362 4.09743 4.13047 4.24345 4.33937 4.40863 4.42599 4.44177 4.48549 4.51471 4.60609 4.72034 4.75190 4.76665 4.79368 4.80030 4.82079 4.87391 4.91442 4.95946 4.99101 5.00360 5.02777 5.08176 5.13764 5.22531 5.24953 5.31851 5.34768 5.48777 5.59503 5.61353 5.67829 5.76014 6.10903 6.36325 6.38626 7.10084 7.18100 7.92213 8.35029 9.23156 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.002625 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.624902 B =10662.451237 C =11541.384351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.065 3.935 4 C -0.070 4.070 5 C -0.171 4.171 6 C 0.546 3.454 7 O -0.586 6.586 8 N -0.602 5.602 9 C 0.116 3.884 10 C -0.122 4.122 11 C -0.074 4.074 12 C -0.115 4.115 13 C 0.151 3.849 14 N -0.623 5.623 15 C 0.179 3.821 16 C -0.256 4.256 17 H 0.072 0.928 18 C -0.059 4.059 19 N -0.942 5.942 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.295 1.295 24 C -0.126 4.126 25 C 0.107 3.893 26 C -0.146 4.146 27 C -0.131 4.131 28 H 0.034 0.966 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.029 0.971 41 H 0.031 0.969 42 H 0.048 0.952 43 H 0.062 0.938 44 H -0.002 1.002 45 H 0.014 0.986 46 H 0.031 0.969 47 H 0.245 0.755 48 H 0.051 0.949 49 H 0.091 0.909 50 H 0.090 0.910 51 H 0.108 0.892 52 H 0.087 0.913 53 H 0.123 0.877 54 H 0.134 0.866 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.905 8.857 23.131 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.012 4.012 4 C -0.107 4.107 5 C -0.174 4.174 6 C 0.335 3.665 7 O -0.467 6.467 8 N -0.333 5.333 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.093 4.093 12 C -0.155 4.155 13 C 0.026 3.974 14 N -0.347 5.347 15 C 0.034 3.966 16 C -0.386 4.386 17 H 0.089 0.911 18 C -0.253 4.253 19 N -0.589 5.589 20 Si 0.795 3.205 21 H -0.189 1.189 22 H -0.219 1.219 23 H -0.222 1.222 24 C -0.164 4.164 25 C -0.015 4.015 26 C -0.184 4.184 27 C -0.168 4.168 28 H 0.053 0.947 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.033 0.967 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.110 0.890 50 H 0.108 0.892 51 H 0.126 0.874 52 H 0.106 0.894 53 H 0.141 0.859 54 H 0.152 0.848 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.578 9.116 23.125 25.987 hybrid contribution -1.270 0.221 -1.609 2.062 sum 6.307 9.337 21.516 24.288 Atomic orbital electron populations 1.22894 0.79867 1.03866 1.00358 1.87812 1.21098 1.28238 1.95493 1.22461 0.94978 0.84212 0.99522 1.21047 0.91868 0.92571 1.05240 1.21234 1.03813 0.97065 0.95329 1.20061 0.78377 0.84126 0.83912 1.90652 1.41467 1.29164 1.85414 1.48177 1.47151 1.32819 1.05185 1.21570 0.99317 0.93932 0.85857 1.21888 0.98187 0.97025 0.98891 1.21046 0.98282 0.94841 0.95107 1.22009 0.99037 0.97367 0.97126 1.21069 0.94019 0.90667 0.91693 1.44286 1.67273 1.20144 1.02967 1.20504 0.94585 0.87356 0.94200 1.19591 1.09636 1.25078 0.84293 0.91051 1.25795 0.95586 1.01622 1.02338 1.70254 1.12796 1.41818 1.34054 0.85204 0.77489 0.77037 0.80762 1.18857 1.21881 1.22214 1.21988 1.01255 0.98322 0.94857 1.22065 0.92137 0.86206 1.01050 1.23133 1.01505 1.00513 0.93203 1.23280 0.88117 1.04485 1.00945 0.94741 0.88165 0.92748 0.92658 0.95975 0.89826 0.87764 0.89710 0.90923 0.90768 0.93699 0.89867 0.95218 0.95010 0.93406 0.91967 0.98342 0.96743 0.95048 0.94529 0.93024 0.89035 0.89151 0.87418 0.89431 0.85922 0.84768 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.74 16 2 O -0.41 -9.48 10.70 -148.98 -1.59 -11.07 16 3 C 0.06 1.38 5.75 71.98 0.41 1.79 16 4 C -0.07 -1.12 5.20 30.59 0.16 -0.97 16 5 C -0.17 -2.79 0.85 -52.93 -0.04 -2.84 16 6 C 0.55 12.95 5.88 87.66 0.52 13.46 16 7 O -0.59 -18.59 16.19 -3.02 -0.05 -18.64 16 8 N -0.60 -12.78 2.97 -818.91 -2.43 -15.21 16 9 C 0.12 2.62 6.41 86.36 0.55 3.17 16 10 C -0.12 -3.06 5.36 30.68 0.16 -2.90 16 11 C -0.07 -1.86 2.15 -10.77 -0.02 -1.88 16 12 C -0.12 -4.12 5.01 30.59 0.15 -3.96 16 13 C 0.15 5.78 5.46 86.38 0.47 6.26 16 14 N -0.62 -31.37 2.92 -726.95 -2.13 -33.50 16 15 C 0.18 9.01 9.01 127.77 1.15 10.16 16 16 C -0.26 -14.11 9.67 84.03 0.81 -13.30 16 17 H 0.07 3.81 7.85 -2.91 -0.02 3.78 16 18 C -0.06 -3.36 5.12 84.86 0.43 -2.92 16 19 N -0.94 -56.89 10.61 21.65 0.23 -56.66 16 20 Si 0.97 45.63 29.57 68.60 2.03 47.66 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 C -0.13 -2.64 5.15 30.67 0.16 -2.48 16 25 C 0.11 1.73 5.79 86.36 0.50 2.23 16 26 C -0.15 -1.97 9.76 30.62 0.30 -1.67 16 27 C -0.13 -1.32 9.26 30.62 0.28 -1.04 16 28 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.02 0.57 7.37 -2.39 -0.02 0.56 16 33 H 0.08 1.38 6.28 -2.39 -0.02 1.37 16 34 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 1.89 7.05 -2.39 -0.02 1.87 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.76 8.03 -2.38 -0.02 1.74 16 43 H 0.06 2.06 6.25 -2.39 -0.01 2.05 16 44 H 0.00 -0.10 7.36 -2.39 -0.02 -0.11 16 45 H 0.01 0.76 7.27 -2.39 -0.02 0.75 16 46 H 0.03 1.32 7.83 -2.38 -0.02 1.30 16 47 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.09 1.77 6.50 -2.39 -0.02 1.75 16 50 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.11 1.37 4.34 -2.39 -0.01 1.36 16 52 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 53 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 54 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 55 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -72.86 423.83 4.14 -68.72 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.83 Total: 13.85 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 7.25 Total: 4.86 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -4.33 Total: -105.37 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.64 Total: -29.72 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.86 4.14 -68.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496504696.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.990 kcal (2) G-P(sol) polarization free energy of solvation -72.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds