Wall clock time and date at job start Tue Mar 31 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00097 * 2 1 4 4 C 1.52999 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.50692 * 110.43556 * 300.69973 * 4 3 2 6 6 O 1.21282 * 120.00345 * 239.29959 * 5 4 3 7 7 N 1.34780 * 120.00183 * 59.29961 * 5 4 3 8 8 C 1.46496 * 120.00159 * 185.20499 * 7 5 4 9 9 H 1.08999 * 109.47489 * 11.13521 * 8 7 5 10 10 C 1.53007 * 109.46792 * 131.12821 * 8 7 5 11 11 N 1.46500 * 109.47352 * 305.00592 * 10 8 7 12 12 C 1.36939 * 120.00079 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99886 * 359.97438 * 12 11 10 14 14 C 1.38809 * 120.00053 * 179.97438 * 12 11 10 15 15 N 1.31622 * 119.99961 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00051 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47056 * 90.00367 * 16 14 12 18 18 H 1.48501 * 109.47247 * 210.00277 * 16 14 12 19 19 H 1.48499 * 109.47432 * 330.00614 * 16 14 12 20 20 C 1.52997 * 109.47415 * 251.12981 * 8 7 5 21 21 C 1.54883 * 110.59864 * 61.72623 * 20 8 7 22 22 C 1.54894 * 102.74873 * 156.67650 * 21 20 8 23 23 C 1.54261 * 104.19467 * 322.05334 * 22 21 20 24 24 C 1.53877 * 106.59971 * 23.61368 * 23 22 21 25 25 C 1.54894 * 110.48829 * 63.24771 * 4 3 2 26 26 C 1.55237 * 102.59035 * 156.67451 * 25 4 3 27 27 C 1.54265 * 104.23006 * 322.08352 * 26 25 4 28 28 C 1.53871 * 106.60063 * 23.60773 * 27 26 25 29 29 H 1.08995 * 109.47153 * 60.00449 * 1 2 3 30 30 H 1.09007 * 109.46779 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46960 * 299.99871 * 1 2 3 32 32 H 1.09002 * 109.47214 * 59.99860 * 3 2 1 33 33 H 1.09000 * 109.47444 * 300.00278 * 3 2 1 34 34 H 0.97003 * 119.99598 * 5.21479 * 7 5 4 35 35 H 1.09001 * 109.46615 * 65.00333 * 10 8 7 36 36 H 1.08991 * 109.47139 * 185.00138 * 10 8 7 37 37 H 0.96999 * 119.99841 * 359.97438 * 11 10 8 38 38 H 0.96997 * 120.00256 * 179.97438 * 15 14 12 39 39 H 1.09003 * 110.43699 * 299.10416 * 20 8 7 40 40 H 1.08998 * 110.75503 * 274.99082 * 21 20 8 41 41 H 1.09006 * 110.75919 * 38.35675 * 21 20 8 42 42 H 1.09002 * 110.48194 * 203.37685 * 22 21 20 43 43 H 1.08995 * 110.48365 * 80.73394 * 22 21 20 44 44 H 1.09000 * 110.03914 * 264.32978 * 23 22 21 45 45 H 1.08998 * 110.07155 * 142.91618 * 23 22 21 46 46 H 1.09001 * 110.03255 * 240.71401 * 24 23 22 47 47 H 1.08999 * 110.03605 * 119.27873 * 24 23 22 48 48 H 1.08998 * 110.74866 * 275.06575 * 25 4 3 49 49 H 1.09000 * 110.75519 * 38.43099 * 25 4 3 50 50 H 1.08996 * 110.46796 * 203.38937 * 26 25 4 51 51 H 1.09002 * 110.46615 * 80.77041 * 26 25 4 52 52 H 1.09000 * 110.02956 * 264.32375 * 27 26 25 53 53 H 1.08995 * 110.03291 * 142.89505 * 27 26 25 54 54 H 1.09001 * 110.03933 * 240.71545 * 28 27 26 55 55 H 1.09004 * 110.03089 * 119.28618 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0035 0.4241 1.2132 6 8 4.7618 0.9477 2.0017 7 7 3.5795 -0.8380 1.4227 8 6 3.9419 -1.5369 2.6581 9 1 4.3781 -0.8282 3.3620 10 6 2.6900 -2.1637 3.2754 11 7 1.6698 -1.1298 3.4667 12 6 0.4557 -1.4579 4.0084 13 1 0.2500 -2.4790 4.2941 14 6 -0.5108 -0.4783 4.1902 15 7 -0.2603 0.7660 3.8414 16 14 -2.1672 -0.9259 4.9283 17 1 -2.1045 -0.7874 6.4056 18 1 -3.2110 -0.0172 4.3898 19 1 -2.5030 -2.3291 4.5766 20 6 4.9597 -2.6350 2.3432 21 6 6.2562 -2.0240 1.7561 22 6 7.3175 -3.1075 2.0707 23 6 6.9218 -3.6306 3.4669 24 6 5.4226 -3.3302 3.6402 25 6 4.0238 0.4909 -1.2966 26 6 5.4893 0.9889 -1.4154 27 6 5.4300 2.4574 -0.9465 28 6 4.1877 2.5818 -0.0471 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.0345 -1.2835 0.7553 35 1 2.3044 -2.9359 2.6097 36 1 2.9428 -2.6073 4.2383 37 1 1.8544 -0.2129 3.2097 38 1 -0.9357 1.4505 3.9681 39 1 4.5335 -3.3620 1.6519 40 1 6.1613 -1.8771 0.6803 41 1 6.5018 -1.0864 2.2549 42 1 8.3149 -2.6684 2.0964 43 1 7.2721 -3.9108 1.3354 44 1 7.4971 -3.1149 4.2358 45 1 7.0967 -4.7047 3.5274 46 1 5.2705 -2.6687 4.4931 47 1 4.8699 -4.2586 3.7839 48 1 3.9890 -0.5934 -1.1909 49 1 3.4345 0.8156 -2.1542 50 1 5.8286 0.9320 -2.4496 51 1 6.1434 0.4072 -0.7658 52 1 5.3362 3.1204 -1.8066 53 1 6.3275 2.7050 -0.3798 54 1 3.4910 3.3053 -0.4706 55 1 4.4824 2.8898 0.9561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500094662.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:27 Heat of formation + Delta-G solvation = -117.765771 kcal Electronic energy + Delta-G solvation = -32992.700653 eV Core-core repulsion = 29027.776260 eV Total energy + Delta-G solvation = -3964.924393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62495 -39.70817 -38.46949 -37.62911 -36.75930 -35.12348 -33.01899 -31.85808 -30.78618 -29.56412 -29.46556 -27.73468 -27.45451 -25.36660 -25.06540 -23.76413 -22.29962 -21.35534 -21.26414 -20.87797 -20.02776 -19.07127 -17.99630 -17.50786 -16.99722 -16.82978 -16.66081 -16.36675 -16.22236 -16.02117 -15.69892 -15.25957 -15.10355 -14.91799 -14.74310 -14.22463 -14.18153 -14.12318 -13.96750 -13.63486 -13.21336 -13.01503 -12.83600 -12.51510 -12.36543 -12.34363 -12.28635 -12.14602 -12.11976 -11.99929 -11.97778 -11.91302 -11.88415 -11.80154 -11.65440 -11.59323 -11.40490 -11.27260 -11.21400 -10.92814 -10.64454 -10.37086 -9.73675 -8.90627 -7.86244 -5.14107 1.46275 1.48101 1.55523 1.79378 2.39412 2.58341 2.82427 3.45821 3.57971 3.59374 3.68522 3.72666 3.80700 3.92743 4.09774 4.19722 4.26298 4.29677 4.40075 4.40972 4.50511 4.55970 4.60043 4.60439 4.62040 4.68139 4.71596 4.74214 4.76452 4.81058 4.81955 4.88079 4.89359 4.96642 5.00986 5.04885 5.08645 5.11059 5.13464 5.14197 5.22309 5.29195 5.31430 5.33347 5.37579 5.51402 5.52827 5.53713 5.54631 5.80047 6.26193 6.32017 6.81676 7.40125 7.49470 8.15816 8.41648 9.35619 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008600 B = 0.005351 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.857452 B = 5231.288636 C = 7685.299909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.388 6.388 3 C 0.084 3.916 4 C -0.079 4.079 5 C 0.532 3.468 6 O -0.588 6.588 7 N -0.689 5.689 8 C 0.151 3.849 9 H 0.059 0.941 10 C 0.147 3.853 11 N -0.732 5.732 12 C -0.236 4.236 13 H 0.071 0.929 14 C -0.064 4.064 15 N -0.958 5.958 16 Si 0.963 3.037 17 H -0.295 1.295 18 H -0.296 1.296 19 H -0.271 1.271 20 C -0.089 4.089 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.095 4.095 26 C -0.121 4.121 27 C -0.113 4.113 28 C -0.108 4.108 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.082 0.918 34 H 0.409 0.591 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.372 0.628 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.093 0.907 51 H 0.048 0.952 52 H 0.088 0.912 53 H 0.055 0.945 54 H 0.085 0.915 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.333 -4.234 -14.500 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.307 6.307 3 C 0.007 3.993 4 C -0.082 4.082 5 C 0.319 3.681 6 O -0.469 6.469 7 N -0.338 5.338 8 C 0.045 3.955 9 H 0.077 0.923 10 C 0.020 3.980 11 N -0.374 5.374 12 C -0.368 4.368 13 H 0.089 0.911 14 C -0.257 4.257 15 N -0.609 5.609 16 Si 0.793 3.207 17 H -0.223 1.223 18 H -0.223 1.223 19 H -0.196 1.196 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.132 4.132 26 C -0.159 4.159 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.246 0.754 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.204 0.796 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.116 0.884 50 H 0.111 0.889 51 H 0.067 0.933 52 H 0.107 0.893 53 H 0.074 0.926 54 H 0.104 0.896 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.824 -4.182 -13.855 19.337 hybrid contribution -1.797 0.607 0.943 2.118 sum 11.027 -3.575 -12.912 17.352 Atomic orbital electron populations 1.22562 0.80107 1.02624 0.99396 1.87636 1.20487 1.27248 1.95352 1.22402 0.91067 0.85561 1.00320 1.21713 0.94028 0.97520 0.94949 1.20526 0.79098 0.81659 0.86790 1.90602 1.38036 1.69302 1.48979 1.45729 1.52932 1.14214 1.20951 1.21126 0.94305 0.93703 0.86326 0.92311 1.21100 0.88271 0.91552 0.97121 1.42375 1.12582 1.07378 1.75114 1.19529 0.91495 0.94069 1.31733 0.91097 1.25342 1.01390 0.95505 1.03465 1.69847 1.34844 1.00941 1.55252 0.85304 0.80486 0.77282 0.77625 1.22321 1.22296 1.19556 1.22256 0.94610 0.95897 0.98110 1.22372 0.94338 0.97825 0.99934 1.22330 0.98157 0.97912 0.97038 1.22112 0.94714 1.01578 0.97288 1.22167 0.96850 1.00187 0.96460 1.22570 0.96418 0.99882 0.94348 1.22430 0.95858 0.95519 1.02055 1.22047 0.96548 0.97505 0.98986 1.22085 0.97887 0.93665 1.00975 0.92381 0.89917 0.96295 0.96205 0.89979 0.75365 0.95346 0.95444 0.79561 0.94531 0.89444 0.91923 0.93807 0.91373 0.90336 0.92272 0.90294 0.93357 0.90779 0.91038 0.88416 0.88866 0.93273 0.89339 0.92626 0.89642 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.65 11.01 113.37 1.25 2.90 16 2 O -0.39 -12.92 8.11 -148.98 -1.21 -14.13 16 3 C 0.08 2.61 4.70 71.98 0.34 2.95 16 4 C -0.08 -2.29 0.60 -51.85 -0.03 -2.32 16 5 C 0.53 19.38 6.21 87.65 0.54 19.92 16 6 O -0.59 -25.65 14.69 -3.04 -0.04 -25.70 16 7 N -0.69 -23.78 3.45 -442.54 -1.53 -25.31 16 8 C 0.15 5.42 1.83 44.99 0.08 5.50 16 9 H 0.06 2.55 7.00 -2.39 -0.02 2.53 16 10 C 0.15 6.03 5.68 86.38 0.49 6.52 16 11 N -0.73 -37.73 5.43 -343.45 -1.87 -39.60 16 12 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 13 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 14 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 15 N -0.96 -57.89 13.06 21.65 0.28 -57.61 16 16 Si 0.96 46.11 29.55 68.60 2.03 48.14 16 17 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 C -0.09 -2.44 2.61 -9.72 -0.03 -2.46 16 21 C -0.11 -2.77 5.96 31.88 0.19 -2.58 16 22 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 23 C -0.12 -2.46 6.80 31.32 0.21 -2.25 16 24 C -0.12 -3.00 5.48 31.32 0.17 -2.83 16 25 C -0.09 -2.03 5.59 32.01 0.18 -1.85 16 26 C -0.12 -2.39 6.62 31.79 0.21 -2.18 16 27 C -0.11 -2.38 6.80 31.32 0.21 -2.17 16 28 C -0.11 -2.91 5.75 31.32 0.18 -2.73 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.41 13.51 6.61 -92.71 -0.61 12.90 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.03 1.14 7.48 -2.39 -0.02 1.12 16 37 H 0.37 21.16 7.33 -92.71 -0.68 20.48 16 38 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.04 1.40 7.93 -2.38 -0.02 1.38 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.05 1.41 7.73 -2.39 -0.02 1.39 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.07 1.56 7.51 -2.39 -0.02 1.54 16 49 H 0.10 1.70 8.06 -2.39 -0.02 1.68 16 50 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 54 H 0.09 1.94 7.83 -2.39 -0.02 1.93 16 55 H 0.05 1.80 6.86 -2.38 -0.02 1.78 16 Total: -1.00 -68.05 422.46 2.75 -65.30 By element: Atomic # 1 Polarization: 50.53 SS G_CDS: -0.44 Total: 50.09 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.53 Total: -1.19 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -3.11 Total: -122.52 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.25 Total: -39.82 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -68.05 2.75 -65.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500094662.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.465 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds