Wall clock time and date at job start Tue Mar 31 2020 22:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00108 * 2 1 4 4 H 1.09002 * 109.47394 * 29.99452 * 3 2 1 5 5 C 1.50707 * 109.47021 * 269.99779 * 3 2 1 6 6 O 1.21283 * 119.99659 * 354.99908 * 5 3 2 7 7 N 1.34774 * 120.00318 * 174.99850 * 5 3 2 8 8 C 1.46494 * 120.00088 * 185.28927 * 7 5 3 9 9 H 1.09000 * 109.47401 * 355.16690 * 8 7 5 10 10 C 1.52997 * 109.47379 * 115.16690 * 8 7 5 11 11 N 1.46500 * 109.47188 * 305.00267 * 10 8 7 12 12 C 1.36932 * 120.00288 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99987 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00485 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99638 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00599 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47042 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47186 * 119.99871 * 16 14 12 19 19 H 1.48500 * 109.47093 * 240.00459 * 16 14 12 20 20 C 1.53003 * 109.47244 * 235.16577 * 8 7 5 21 21 C 1.54270 * 110.03431 * 180.65640 * 20 8 7 22 22 C 1.54888 * 104.19596 * 217.10555 * 21 20 8 23 23 C 1.54898 * 102.74701 * 37.94437 * 22 21 20 24 24 C 1.53875 * 110.03030 * 63.49144 * 20 8 7 25 25 C 1.52995 * 109.47590 * 150.00003 * 3 2 1 26 26 C 1.54266 * 110.03389 * 57.16108 * 25 3 2 27 27 C 1.54888 * 104.19728 * 217.11245 * 26 25 3 28 28 C 1.54883 * 102.75142 * 37.94135 * 27 26 25 29 29 C 1.53873 * 110.02826 * 299.99921 * 25 3 2 30 30 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47292 * 300.00662 * 1 2 3 32 32 H 1.09002 * 109.47077 * 60.00606 * 1 2 3 33 33 H 0.97000 * 119.99623 * 5.29339 * 7 5 3 34 34 H 1.09004 * 109.46913 * 64.99879 * 10 8 7 35 35 H 1.08994 * 109.47317 * 184.99961 * 10 8 7 36 36 H 0.97002 * 120.00115 * 359.97438 * 11 10 8 37 37 H 0.96996 * 119.99950 * 179.97438 * 15 14 12 38 38 H 1.08993 * 110.01640 * 302.10248 * 20 8 7 39 39 H 1.08999 * 110.48086 * 335.78450 * 21 20 8 40 40 H 1.08996 * 110.48382 * 98.43005 * 21 20 8 41 41 H 1.08995 * 110.76178 * 279.63220 * 22 21 20 42 42 H 1.09000 * 110.91231 * 156.33019 * 22 21 20 43 43 H 1.09002 * 110.48331 * 203.37485 * 23 22 21 44 44 H 1.08996 * 110.59665 * 80.79056 * 23 22 21 45 45 H 1.09006 * 110.03624 * 238.56917 * 24 20 8 46 46 H 1.09004 * 110.03531 * 0.02562 * 24 20 8 47 47 H 1.08998 * 110.02235 * 178.60641 * 25 3 2 48 48 H 1.09004 * 110.48433 * 335.78966 * 26 25 3 49 49 H 1.08998 * 110.48824 * 98.43093 * 26 25 3 50 50 H 1.08999 * 110.75464 * 279.62578 * 27 26 25 51 51 H 1.09000 * 110.76089 * 156.25967 * 27 26 25 52 52 H 1.08998 * 110.48937 * 203.38195 * 28 27 26 53 53 H 1.09003 * 110.60208 * 80.79173 * 28 27 26 54 54 H 1.09009 * 110.03016 * 238.56781 * 29 25 3 55 55 H 1.09000 * 110.03942 * 359.94610 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2146 1.7643 -1.4209 6 8 1.9792 1.0104 -2.3413 7 7 2.6589 3.0123 -1.6687 8 6 2.7474 3.4979 -3.0480 9 1 2.4963 2.6895 -3.7347 10 6 1.7679 4.6566 -3.2446 11 7 0.4205 4.2274 -2.8617 12 6 -0.6288 5.1024 -2.9535 13 1 -0.4631 6.1089 -3.3086 14 6 -1.9055 4.6956 -2.5912 15 7 -2.1075 3.4688 -2.1590 16 14 -3.3370 5.8890 -2.7171 17 1 -2.8488 7.1958 -3.2263 18 1 -4.3559 5.3433 -3.6494 19 1 -3.9442 6.0770 -1.3750 20 6 4.1718 3.9811 -3.3282 21 6 4.2755 4.5110 -4.7734 22 6 5.6830 4.0650 -5.2414 23 6 5.8270 2.6615 -4.6022 24 6 5.1583 2.8052 -3.2194 25 6 3.3589 1.2633 0.7212 26 6 4.2869 0.2319 0.0468 27 6 5.0607 -0.4104 1.2248 28 6 3.9820 -0.5031 2.3323 29 6 3.1650 0.7960 2.1744 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.9202 3.5889 -0.9338 34 1 2.0715 5.4986 -2.6224 35 1 1.7689 4.9596 -4.2916 36 1 0.2717 3.3234 -2.5432 37 1 -2.9995 3.1847 -1.9055 38 1 4.4457 4.7647 -2.6219 39 1 3.5050 4.0622 -5.4003 40 1 4.1953 5.5979 -4.7878 41 1 6.4486 4.7422 -4.8629 42 1 5.7293 4.0009 -6.3285 43 1 6.8791 2.3987 -4.4918 44 1 5.3084 1.9125 -5.2007 45 1 5.9115 3.0185 -2.4609 46 1 4.6222 1.8901 -2.9674 47 1 3.8218 2.2500 0.7049 48 1 3.7010 -0.5211 -0.4804 49 1 4.9757 0.7281 -0.6368 50 1 5.8845 0.2298 1.5405 51 1 5.4228 -1.4022 0.9542 52 1 4.4483 -0.5432 3.3167 53 1 3.3463 -1.3748 2.1766 54 1 3.5346 1.5556 2.8633 55 1 2.1101 0.6001 2.3661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500123155.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:39 Heat of formation + Delta-G solvation = -121.513024 kcal Electronic energy + Delta-G solvation = -32253.181449 eV Core-core repulsion = 28288.094563 eV Total energy + Delta-G solvation = -3965.086886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52986 -39.89682 -38.65488 -37.64877 -36.79466 -35.23291 -33.22912 -31.94755 -30.70661 -29.57237 -29.49283 -27.78385 -27.58856 -26.40529 -24.96940 -22.94149 -21.92199 -21.50836 -21.22160 -20.74409 -20.50393 -19.24503 -18.41010 -17.84255 -17.21262 -16.83089 -16.68278 -16.33847 -16.26681 -15.99281 -15.59678 -15.35512 -15.14559 -15.02908 -14.80733 -14.25383 -14.13343 -14.11425 -13.95812 -13.69622 -13.55532 -13.01407 -12.89890 -12.65958 -12.59411 -12.28988 -12.20814 -12.10526 -11.96560 -11.92526 -11.89120 -11.82663 -11.81116 -11.64893 -11.64011 -11.57657 -11.44011 -11.42428 -11.32252 -11.28458 -10.98991 -10.20975 -9.89673 -9.00829 -7.95071 -5.24760 1.44210 1.45675 1.55428 1.69095 2.14689 2.53638 2.79729 3.37941 3.52042 3.60773 3.65271 3.75007 3.80887 3.85090 3.95610 4.10854 4.16160 4.23776 4.36473 4.39997 4.42913 4.53128 4.59195 4.61747 4.63707 4.68139 4.72997 4.73864 4.75768 4.80598 4.83909 4.86205 4.88565 4.91052 4.93259 5.03253 5.06943 5.11755 5.13742 5.18055 5.28741 5.29792 5.34739 5.37559 5.47208 5.48418 5.50582 5.53452 5.58277 5.66957 5.99897 6.25102 6.64491 7.31236 7.36331 8.07626 8.31009 9.27978 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007753 B = 0.004846 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.479602 B = 5776.227152 C = 8726.487355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.081 3.919 4 H 0.085 0.915 5 C 0.498 3.502 6 O -0.576 6.576 7 N -0.700 5.700 8 C 0.151 3.849 9 H 0.060 0.940 10 C 0.141 3.859 11 N -0.743 5.743 12 C -0.244 4.244 13 H 0.078 0.922 14 C -0.074 4.074 15 N -0.967 5.967 16 Si 0.973 3.027 17 H -0.264 1.264 18 H -0.298 1.298 19 H -0.291 1.291 20 C -0.086 4.086 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.111 4.111 25 C -0.077 4.077 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.113 4.113 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.013 0.987 33 H 0.409 0.591 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.371 0.629 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.039 0.961 47 H 0.107 0.893 48 H 0.046 0.954 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.065 0.935 52 H 0.080 0.920 53 H 0.053 0.947 54 H 0.086 0.914 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.039 -2.087 7.414 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.019 3.981 4 H 0.103 0.897 5 C 0.285 3.715 6 O -0.455 6.455 7 N -0.352 5.352 8 C 0.045 3.955 9 H 0.078 0.922 10 C 0.013 3.987 11 N -0.386 5.386 12 C -0.376 4.376 13 H 0.096 0.904 14 C -0.267 4.267 15 N -0.617 5.617 16 Si 0.802 3.198 17 H -0.189 1.189 18 H -0.225 1.225 19 H -0.218 1.218 20 C -0.106 4.106 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.163 4.163 24 C -0.149 4.149 25 C -0.096 4.096 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.156 4.156 29 C -0.151 4.151 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.245 0.755 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.125 0.875 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.101 0.899 51 H 0.083 0.917 52 H 0.099 0.901 53 H 0.072 0.928 54 H 0.104 0.896 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.881 -2.625 6.723 21.151 hybrid contribution -1.976 0.413 -0.128 2.023 sum 17.905 -2.212 6.595 19.209 Atomic orbital electron populations 1.22829 0.80302 1.03448 0.99661 1.87881 1.20149 1.25692 1.94305 1.22218 0.98253 0.86432 0.91194 0.89736 1.21666 0.75419 0.81831 0.92546 1.90663 1.51965 1.55256 1.47645 1.45705 1.66191 1.14301 1.09053 1.21206 0.95382 0.95500 0.83379 0.92204 1.21247 0.84397 0.95443 0.97566 1.42540 1.03553 1.13370 1.79116 1.19683 0.88059 0.94554 1.35259 0.90450 1.25562 1.00121 0.98204 1.02780 1.69870 1.21239 1.18465 1.52176 0.85082 0.79356 0.78582 0.76774 1.18873 1.22528 1.21844 1.22026 0.91687 0.98327 0.98561 1.22418 0.97757 1.01120 0.94521 1.22461 0.96232 0.96184 1.00355 1.22362 1.00717 0.97467 0.95723 1.22105 0.97612 0.96988 0.98196 1.21969 0.90689 1.01403 0.95548 1.22319 0.97332 0.97787 0.98083 1.22448 0.97703 1.00719 0.94390 1.22296 0.96942 0.97153 0.99197 1.22128 1.00628 0.98249 0.94054 0.87853 0.92666 0.96775 0.75543 0.94644 0.95317 0.79732 0.94239 0.88693 0.93331 0.90352 0.89780 0.91203 0.90246 0.93516 0.90044 0.94202 0.87470 0.93485 0.91879 0.89884 0.91652 0.90105 0.92831 0.89552 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 10.81 113.37 1.23 2.40 16 2 O -0.36 -12.57 8.34 -129.99 -1.08 -13.65 16 3 C 0.08 2.51 2.05 29.85 0.06 2.57 16 4 H 0.08 2.64 7.79 -2.39 -0.02 2.62 16 5 C 0.50 18.55 5.78 87.66 0.51 19.06 16 6 O -0.58 -27.24 15.85 15.95 0.25 -26.98 16 7 N -0.70 -22.27 3.98 -442.54 -1.76 -24.03 16 8 C 0.15 5.10 1.70 44.99 0.08 5.18 16 9 H 0.06 2.53 6.91 -2.39 -0.02 2.52 16 10 C 0.14 5.62 5.61 86.38 0.48 6.10 16 11 N -0.74 -38.93 5.43 -343.46 -1.87 -40.79 16 12 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 13 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 14 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 15 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 16 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 C -0.09 -2.09 2.71 -10.07 -0.03 -2.11 16 21 C -0.12 -2.77 5.33 31.67 0.17 -2.60 16 22 C -0.11 -2.11 6.91 31.89 0.22 -1.89 16 23 C -0.13 -2.56 6.83 31.67 0.22 -2.34 16 24 C -0.11 -2.52 6.23 31.32 0.20 -2.32 16 25 C -0.08 -1.73 2.77 -10.07 -0.03 -1.76 16 26 C -0.12 -2.77 5.67 31.67 0.18 -2.59 16 27 C -0.12 -2.03 6.91 31.88 0.22 -1.81 16 28 C -0.12 -2.09 6.83 31.67 0.22 -1.87 16 29 C -0.11 -2.14 6.22 31.32 0.19 -1.95 16 30 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.05 1.68 8.09 -2.39 -0.02 1.67 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.41 10.44 8.44 -92.71 -0.78 9.66 16 34 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.03 1.17 7.21 -2.39 -0.02 1.15 16 36 H 0.37 21.41 6.80 -92.71 -0.63 20.78 16 37 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.34 7.57 -2.39 -0.02 1.32 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.04 1.15 7.35 -2.39 -0.02 1.13 16 47 H 0.11 1.89 7.77 -2.39 -0.02 1.87 16 48 H 0.05 1.45 7.12 -2.39 -0.02 1.43 16 49 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 54 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 55 H 0.06 1.24 7.42 -2.39 -0.02 1.22 16 Total: -1.00 -74.65 424.26 2.51 -72.14 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: -0.56 Total: 47.51 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.22 Total: -2.77 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -3.34 Total: -124.98 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.83 Total: -40.64 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.65 2.51 -72.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500123155.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.375 kcal (2) G-P(sol) polarization free energy of solvation -74.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds