Wall clock time and date at job start Tue Mar 31 2020 22:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99974 * 2 1 4 4 H 1.09003 * 109.47179 * 332.62018 * 3 2 1 5 5 C 1.50704 * 109.46961 * 92.61584 * 3 2 1 6 6 O 1.21276 * 120.00032 * 4.99912 * 5 3 2 7 7 N 1.34778 * 119.99576 * 185.00039 * 5 3 2 8 8 C 1.46507 * 119.99817 * 175.52134 * 7 5 3 9 9 H 1.08997 * 109.46856 * 340.01582 * 8 7 5 10 10 C 1.52995 * 109.47047 * 220.01749 * 8 7 5 11 11 N 1.46504 * 109.47469 * 54.99918 * 10 8 7 12 12 C 1.36927 * 120.00312 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00135 * 0.02562 * 12 11 10 14 14 C 1.38815 * 120.00286 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00085 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99888 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47146 * 89.99696 * 16 14 12 18 18 H 1.48496 * 109.47408 * 210.00303 * 16 14 12 19 19 H 1.48501 * 109.47148 * 330.00487 * 16 14 12 20 20 C 1.52998 * 109.47134 * 100.01353 * 8 7 5 21 21 C 1.54274 * 110.03018 * 54.99426 * 20 8 7 22 22 C 1.54966 * 104.15785 * 217.13529 * 21 20 8 23 23 C 1.54889 * 102.77668 * 37.88531 * 22 21 20 24 24 C 1.53874 * 110.03589 * 297.77556 * 20 8 7 25 25 C 1.53000 * 109.47183 * 212.61539 * 3 2 1 26 26 C 1.54269 * 110.03076 * 172.05592 * 25 3 2 27 27 C 1.54891 * 104.19466 * 217.10732 * 26 25 3 28 28 C 1.54896 * 102.74815 * 37.94163 * 27 26 25 29 29 C 1.53875 * 110.03110 * 54.89112 * 25 3 2 30 30 H 1.08997 * 109.46820 * 55.23705 * 1 2 3 31 31 H 1.08994 * 109.47039 * 295.23805 * 1 2 3 32 32 H 1.08998 * 109.47067 * 175.23623 * 1 2 3 33 33 H 0.96994 * 120.00410 * 355.52073 * 7 5 3 34 34 H 1.09001 * 109.47389 * 174.99714 * 10 8 7 35 35 H 1.09001 * 109.47163 * 294.99574 * 10 8 7 36 36 H 0.97007 * 119.99444 * 359.97438 * 11 10 8 37 37 H 0.96995 * 119.99750 * 179.97438 * 15 14 12 38 38 H 1.08997 * 110.01508 * 176.37894 * 20 8 7 39 39 H 1.08998 * 110.48082 * 335.77753 * 21 20 8 40 40 H 1.08991 * 110.48579 * 98.42542 * 21 20 8 41 41 H 1.09001 * 110.71982 * 279.57457 * 22 21 20 42 42 H 1.08997 * 110.76377 * 156.22057 * 22 21 20 43 43 H 1.09007 * 110.48424 * 203.40418 * 23 22 21 44 44 H 1.08995 * 110.59853 * 80.82098 * 23 22 21 45 45 H 1.08995 * 110.02980 * 238.57256 * 24 20 8 46 46 H 1.08999 * 110.03201 * 359.95228 * 24 20 8 47 47 H 1.08996 * 110.01705 * 293.50029 * 25 3 2 48 48 H 1.09000 * 110.48980 * 335.78049 * 26 25 3 49 49 H 1.08998 * 110.48757 * 98.43211 * 26 25 3 50 50 H 1.09000 * 110.75703 * 279.62992 * 27 26 25 51 51 H 1.08998 * 110.91777 * 156.33265 * 27 26 25 52 52 H 1.09000 * 110.48242 * 203.38300 * 28 27 26 53 53 H 1.08998 * 110.59688 * 80.79340 * 28 27 26 54 54 H 1.09001 * 110.02904 * 238.57404 * 29 25 3 55 55 H 1.09005 * 110.03122 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3244 2.0085 -0.4726 5 6 2.2738 1.7379 1.4194 6 8 2.0767 0.9671 2.3347 7 7 2.7286 2.9814 1.6715 8 6 2.8915 3.4353 3.0549 9 1 2.2879 2.8125 3.7150 10 6 2.4367 4.8915 3.1707 11 7 1.0644 5.0157 2.6730 12 6 0.4417 6.2351 2.6786 13 1 0.9624 7.1057 3.0495 14 6 -0.8583 6.3529 2.2064 15 7 -1.4566 7.5252 2.2113 16 14 -1.7587 4.8475 1.5642 17 1 -2.4875 4.1929 2.6804 18 1 -2.7259 5.2592 0.5153 19 1 -0.7783 3.8934 0.9864 20 6 4.3637 3.3272 3.4571 21 6 5.2435 4.1032 2.4552 22 6 6.5209 3.2360 2.3216 23 6 5.9607 1.7925 2.3626 24 6 4.8197 1.8587 3.3987 25 6 3.3277 1.2772 -0.7775 26 6 3.8663 2.7116 -0.9568 27 6 4.4863 2.7098 -2.3762 28 6 3.4982 1.8283 -3.1798 29 6 3.0936 0.7156 -2.1909 30 1 -0.3633 0.5860 -0.8442 31 1 -0.3633 0.4382 0.9295 32 1 -0.3633 -1.0241 -0.0853 33 1 2.9480 3.5758 0.9371 34 1 2.4738 5.2018 4.2150 35 1 3.0965 5.5264 2.5794 36 1 0.5969 4.2338 2.3395 37 1 -2.3649 7.6075 1.8811 38 1 4.5057 3.7226 4.4628 39 1 4.7394 4.1903 1.4927 40 1 5.4904 5.0893 2.8484 41 1 7.1960 3.4123 3.1590 42 1 7.0216 3.4292 1.3729 43 1 6.7313 1.0935 2.6879 44 1 5.5729 1.5038 1.3858 45 1 5.1837 1.5417 4.3759 46 1 3.9919 1.2229 3.0846 47 1 4.0596 0.6660 -0.2494 48 1 3.0530 3.4348 -0.8968 49 1 4.6279 2.9295 -0.2082 50 1 5.4802 2.2624 -2.3631 51 1 4.5243 3.7193 -2.7856 52 1 3.9912 1.4016 -4.0533 53 1 2.6251 2.4074 -3.4805 54 1 3.7125 -0.1676 -2.3489 55 1 2.0415 0.4628 -2.3227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500123156.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:44 Heat of formation + Delta-G solvation = -110.798545 kcal Electronic energy + Delta-G solvation = -33079.739678 eV Core-core repulsion = 29115.117407 eV Total energy + Delta-G solvation = -3964.622271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.82886 -39.88597 -38.69214 -37.82772 -37.00738 -35.17868 -33.47635 -32.21339 -30.83107 -29.67063 -29.42600 -28.02528 -27.72383 -26.44276 -24.74119 -23.03963 -22.04786 -21.58276 -21.17988 -20.82943 -20.34988 -19.74507 -18.75520 -17.70116 -17.35926 -16.96477 -16.75197 -16.68988 -16.04048 -15.99665 -15.69574 -15.46423 -15.21133 -15.06521 -14.82931 -14.53883 -14.31026 -14.17338 -13.96631 -13.86587 -13.42373 -13.25904 -13.12290 -12.90661 -12.50949 -12.30078 -12.20282 -12.18110 -12.03832 -11.94206 -11.92574 -11.88482 -11.83063 -11.75070 -11.61330 -11.54497 -11.46742 -11.38716 -11.32305 -11.29050 -11.05671 -10.31154 -9.96732 -9.33430 -8.06154 -5.38447 1.26533 1.32994 1.37964 1.52773 2.03364 2.41512 2.67743 3.25993 3.40069 3.52418 3.57998 3.70943 3.79652 3.82680 3.86987 3.94760 4.00417 4.14894 4.26359 4.33896 4.34859 4.44735 4.50601 4.52400 4.60480 4.63803 4.65786 4.70835 4.71338 4.75719 4.78726 4.85402 4.87793 4.89170 4.90890 4.96822 5.10007 5.13298 5.13765 5.16638 5.27595 5.28743 5.32837 5.36123 5.43484 5.51070 5.53563 5.57396 5.58259 5.73707 5.89987 6.17695 6.53023 7.03283 7.20742 7.79362 7.97598 9.15269 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008401 B = 0.005419 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.046460 B = 5165.335451 C = 6607.621482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.368 6.368 3 C 0.076 3.924 4 H 0.088 0.912 5 C 0.491 3.509 6 O -0.565 6.565 7 N -0.700 5.700 8 C 0.145 3.855 9 H 0.067 0.933 10 C 0.147 3.853 11 N -0.755 5.755 12 C -0.227 4.227 13 H 0.065 0.935 14 C -0.056 4.056 15 N -0.979 5.979 16 Si 0.944 3.056 17 H -0.290 1.290 18 H -0.289 1.289 19 H -0.258 1.258 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.131 4.131 25 C -0.075 4.075 26 C -0.132 4.132 27 C -0.115 4.115 28 C -0.125 4.125 29 C -0.110 4.110 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.111 0.889 33 H 0.408 0.592 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.361 0.639 37 H 0.258 0.742 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.078 0.922 53 H 0.063 0.937 54 H 0.073 0.927 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.005 -14.283 -9.911 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.285 6.285 3 C 0.015 3.985 4 H 0.106 0.894 5 C 0.278 3.722 6 O -0.444 6.444 7 N -0.356 5.356 8 C 0.040 3.960 9 H 0.085 0.915 10 C 0.020 3.980 11 N -0.401 5.401 12 C -0.357 4.357 13 H 0.083 0.917 14 C -0.248 4.248 15 N -0.629 5.629 16 Si 0.772 3.228 17 H -0.217 1.217 18 H -0.216 1.216 19 H -0.184 1.184 20 C -0.112 4.112 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.094 4.094 26 C -0.170 4.170 27 C -0.152 4.152 28 C -0.163 4.163 29 C -0.148 4.148 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.129 0.871 33 H 0.248 0.752 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.193 0.807 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.097 0.903 51 H 0.095 0.905 52 H 0.097 0.903 53 H 0.082 0.918 54 H 0.091 0.909 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.940 -14.779 -9.221 24.299 hybrid contribution -1.633 -0.061 -0.038 1.634 sum 15.308 -14.841 -9.259 23.244 Atomic orbital electron populations 1.23030 0.80009 1.04452 0.99877 1.87919 1.20768 1.25547 1.94307 1.22393 0.98252 0.86600 0.91265 0.89419 1.21687 0.76134 0.81907 0.92501 1.90631 1.52988 1.53389 1.47434 1.46179 1.65898 1.14420 1.09063 1.21211 0.97177 0.94279 0.83314 0.91466 1.21156 0.84848 0.94021 0.97927 1.42680 1.13536 1.06552 1.77296 1.19041 0.96056 0.87311 1.33341 0.91719 1.25335 0.97969 0.98770 1.02733 1.69848 1.14070 1.24320 1.54695 0.85588 0.78834 0.80309 0.78057 1.21722 1.21575 1.18350 1.22072 0.92200 0.96468 1.00471 1.22455 0.95664 0.98644 0.98734 1.22453 0.96602 0.93707 1.02349 1.22286 0.96919 0.97688 0.98451 1.22316 0.99055 0.95890 0.99579 1.21797 0.92662 0.98546 0.96442 1.22662 1.00646 0.94175 0.99496 1.22437 0.98926 1.00618 0.93238 1.22413 0.99293 0.96528 0.98048 1.22077 1.01874 0.98752 0.92058 0.92313 0.95938 0.87115 0.75247 0.94391 0.93377 0.80666 0.93338 0.89693 0.91601 0.90931 0.91001 0.90400 0.91498 0.92386 0.92283 0.92193 0.90405 0.91685 0.89922 0.90277 0.90488 0.90301 0.91845 0.90871 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.88 113.37 1.23 1.79 16 2 O -0.37 -10.40 9.05 -129.99 -1.18 -11.58 16 3 C 0.08 2.01 1.94 29.85 0.06 2.07 16 4 H 0.09 2.26 7.54 -2.39 -0.02 2.24 16 5 C 0.49 15.47 6.41 87.66 0.56 16.03 16 6 O -0.57 -21.91 14.00 15.97 0.22 -21.68 16 7 N -0.70 -20.03 3.24 -442.53 -1.44 -21.46 16 8 C 0.15 4.45 2.05 44.99 0.09 4.55 16 9 H 0.07 2.45 7.21 -2.39 -0.02 2.43 16 10 C 0.15 5.28 5.81 86.38 0.50 5.78 16 11 N -0.76 -34.54 5.24 -343.45 -1.80 -36.34 16 12 C -0.23 -12.61 10.47 84.04 0.88 -11.73 16 13 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 14 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 15 N -0.98 -61.85 13.97 21.65 0.30 -61.55 16 16 Si 0.94 45.88 27.74 68.60 1.90 47.79 16 17 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 19 H -0.26 -11.39 6.52 99.48 0.65 -10.74 16 20 C -0.09 -2.22 2.79 -10.07 -0.03 -2.25 16 21 C -0.12 -2.31 5.21 31.70 0.17 -2.15 16 22 C -0.11 -1.85 6.91 31.91 0.22 -1.63 16 23 C -0.12 -2.23 6.83 31.67 0.22 -2.01 16 24 C -0.13 -3.19 6.19 31.32 0.19 -2.99 16 25 C -0.08 -1.51 2.69 -10.07 -0.03 -1.54 16 26 C -0.13 -2.24 4.54 31.67 0.14 -2.10 16 27 C -0.11 -1.54 6.91 31.89 0.22 -1.32 16 28 C -0.13 -1.75 6.83 31.67 0.22 -1.53 16 29 C -0.11 -1.87 6.18 31.32 0.19 -1.68 16 30 H 0.06 1.24 7.98 -2.39 -0.02 1.22 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.41 10.47 4.58 -92.71 -0.42 10.04 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.63 7.26 -2.39 -0.02 1.61 16 36 H 0.36 16.54 5.20 -92.70 -0.48 16.06 16 37 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.07 1.31 5.26 -2.39 -0.01 1.29 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.06 1.15 7.83 -2.39 -0.02 1.13 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 1.84 4.61 -2.39 -0.01 1.82 16 47 H 0.08 1.66 8.07 -2.39 -0.02 1.65 16 48 H 0.06 1.22 6.63 -2.39 -0.02 1.20 16 49 H 0.08 1.32 6.61 -2.39 -0.02 1.31 16 50 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 55 H 0.06 1.15 7.24 -2.38 -0.02 1.14 16 Total: -1.00 -70.54 408.46 3.23 -67.31 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: -0.09 Total: 41.03 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.31 Total: -3.50 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -2.93 Total: -119.35 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.95 Total: -33.26 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.79 kcal Total: -70.54 3.23 -67.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500123156.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.493 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds