Wall clock time and date at job start Tue Mar 31 2020 22:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 114.00175 * 2 1 4 4 H 1.09000 * 109.47646 * 328.45964 * 3 2 1 5 5 C 1.50706 * 109.47442 * 88.45878 * 3 2 1 6 6 O 1.21281 * 119.99487 * 4.99500 * 5 3 2 7 7 N 1.34765 * 120.00348 * 184.99935 * 5 3 2 8 8 C 1.46507 * 120.00106 * 175.33742 * 7 5 3 9 9 H 1.08995 * 109.46736 * 1.38541 * 8 7 5 10 10 C 1.53001 * 109.47037 * 121.38212 * 8 7 5 11 11 N 1.46496 * 109.47132 * 305.00280 * 10 8 7 12 12 C 1.36938 * 119.99805 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00193 * 359.97438 * 12 11 10 14 14 C 1.38816 * 119.99765 * 180.02562 * 12 11 10 15 15 N 1.31611 * 120.00244 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99891 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47245 * 89.99334 * 16 14 12 18 18 H 1.48499 * 109.47141 * 209.99940 * 16 14 12 19 19 H 1.48508 * 109.47079 * 329.99777 * 16 14 12 20 20 C 1.53003 * 109.47065 * 241.38391 * 8 7 5 21 21 C 1.54267 * 110.03024 * 175.35812 * 20 8 7 22 22 C 1.54893 * 104.19139 * 217.10601 * 21 20 8 23 23 C 1.54890 * 102.75094 * 37.94219 * 22 21 20 24 24 C 1.53875 * 110.03318 * 58.18936 * 20 8 7 25 25 C 1.52999 * 109.47234 * 208.45439 * 3 2 1 26 26 C 1.54272 * 110.03413 * 170.95005 * 25 3 2 27 27 C 1.54894 * 104.19360 * 217.10809 * 26 25 3 28 28 C 1.54880 * 102.75167 * 37.94477 * 27 26 25 29 29 C 1.53883 * 110.03063 * 53.78601 * 25 3 2 30 30 H 1.09009 * 109.46674 * 55.63814 * 1 2 3 31 31 H 1.09000 * 109.47237 * 295.64143 * 1 2 3 32 32 H 1.09001 * 109.47556 * 175.63613 * 1 2 3 33 33 H 0.96999 * 120.00222 * 355.33899 * 7 5 3 34 34 H 1.08995 * 109.47082 * 65.00023 * 10 8 7 35 35 H 1.09000 * 109.46812 * 185.00130 * 10 8 7 36 36 H 0.96998 * 120.00107 * 359.97438 * 11 10 8 37 37 H 0.97000 * 120.00415 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.01514 * 296.80082 * 20 8 7 39 39 H 1.09001 * 110.48443 * 335.78038 * 21 20 8 40 40 H 1.08993 * 110.48557 * 98.42635 * 21 20 8 41 41 H 1.09005 * 110.75384 * 279.62668 * 22 21 20 42 42 H 1.09002 * 110.91113 * 156.33637 * 22 21 20 43 43 H 1.08997 * 110.48300 * 203.38004 * 23 22 21 44 44 H 1.09000 * 110.59774 * 80.79103 * 23 22 21 45 45 H 1.09004 * 110.03245 * 238.57261 * 24 20 8 46 46 H 1.08999 * 110.03024 * 359.97438 * 24 20 8 47 47 H 1.09001 * 110.02185 * 292.39578 * 25 3 2 48 48 H 1.09001 * 110.48398 * 335.78593 * 26 25 3 49 49 H 1.08995 * 110.48258 * 98.43110 * 26 25 3 50 50 H 1.09001 * 110.75457 * 279.62488 * 27 26 25 51 51 H 1.09006 * 110.90748 * 156.33331 * 27 26 25 52 52 H 1.09001 * 110.48880 * 203.38075 * 28 27 26 53 53 H 1.09002 * 110.60174 * 80.78404 * 28 27 26 54 54 H 1.08992 * 110.03301 * 238.57186 * 29 25 3 55 55 H 1.09000 * 110.02899 * 359.97438 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3580 1.9936 -0.5376 5 6 2.1797 1.7799 1.4203 6 8 1.9215 1.0362 2.3429 7 7 2.6180 3.0305 1.6652 8 6 2.6856 3.5266 3.0421 9 1 2.3672 2.7410 3.7273 10 6 4.1239 3.9346 3.3671 11 7 5.0220 2.8067 3.1078 12 6 6.3671 2.9377 3.3285 13 1 6.7659 3.8726 3.6933 14 6 7.2182 1.8690 3.0822 15 7 6.7322 0.7298 2.6371 16 14 9.0531 2.0479 3.3826 17 1 9.3667 1.6544 4.7798 18 1 9.7964 1.1710 2.4426 19 1 9.4550 3.4608 3.1643 20 6 1.7649 4.7392 3.1931 21 6 1.7364 5.2010 4.6648 22 6 0.2699 5.6425 4.8960 23 6 -0.5341 4.5951 4.0863 24 6 0.3212 4.3539 2.8253 25 6 3.3763 1.2554 -0.6873 26 6 3.9146 2.6857 -0.8978 27 6 4.6269 2.6251 -2.2719 28 6 3.7007 1.6971 -3.0964 29 6 3.2403 0.6268 -2.0853 30 1 -0.3633 0.5801 -0.8484 31 1 -0.3634 0.4447 0.9265 32 1 -0.3634 -1.0247 -0.0782 33 1 2.8887 3.6023 0.9299 34 1 4.4120 4.7796 2.7417 35 1 4.1923 4.2196 4.4170 36 1 4.6638 1.9668 2.7804 37 1 7.3268 -0.0171 2.4654 38 1 2.1093 5.5512 2.5527 39 1 1.9957 4.3762 5.3285 40 1 2.4156 6.0403 4.8144 41 1 0.1021 6.6457 4.5039 42 1 0.0113 5.5946 5.9538 43 1 -1.5119 4.9923 3.8137 44 1 -0.6434 3.6719 4.6554 45 1 -0.0352 4.9796 2.0070 46 1 0.2767 3.3032 2.5388 47 1 4.0764 0.6771 -0.0844 48 1 3.0935 3.4022 -0.9250 49 1 4.6234 2.9460 -0.1118 50 1 5.6211 2.1894 -2.1727 51 1 4.6840 3.6151 -2.7245 52 1 4.2535 1.2358 -3.9148 53 1 2.8449 2.2523 -3.4803 54 1 3.8750 -0.2560 -2.1610 55 1 2.2012 0.3569 -2.2738 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500123157.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:49 Heat of formation + Delta-G solvation = -118.534798 kcal Electronic energy + Delta-G solvation = -32467.419423 eV Core-core repulsion = 28502.461683 eV Total energy + Delta-G solvation = -3964.957740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59922 -39.84579 -38.67571 -37.88308 -36.78104 -35.21968 -33.22888 -31.93118 -30.72053 -29.60617 -29.40721 -27.81137 -27.59908 -26.38910 -24.98351 -22.92595 -21.85830 -21.48524 -21.25461 -20.83795 -20.57955 -19.23502 -18.60015 -17.76755 -17.12369 -16.89327 -16.69914 -16.51030 -16.08084 -16.04173 -15.64729 -15.27550 -15.12139 -15.01432 -14.85651 -14.46052 -14.20074 -14.16942 -14.00195 -13.63400 -13.25463 -13.00433 -12.86547 -12.61493 -12.41624 -12.27229 -12.18880 -12.14617 -12.08489 -11.94722 -11.90651 -11.89968 -11.86575 -11.83137 -11.63559 -11.56651 -11.47352 -11.43664 -11.30756 -11.28229 -10.96632 -10.22404 -9.91250 -8.98015 -7.91537 -5.21575 1.43799 1.46312 1.54492 1.62476 2.16376 2.55051 2.75836 3.40844 3.52460 3.62506 3.65957 3.71827 3.78728 3.85448 3.91663 4.04692 4.16614 4.22467 4.29704 4.39781 4.44911 4.53717 4.55143 4.59529 4.60928 4.65285 4.66858 4.71568 4.75065 4.80478 4.83633 4.87088 4.87911 4.88020 4.93098 5.03162 5.04197 5.09934 5.14423 5.17858 5.27726 5.28337 5.32347 5.33831 5.48267 5.48679 5.49360 5.52400 5.53614 5.65246 6.05788 6.26721 6.62855 7.32527 7.34667 8.11179 8.34182 9.30799 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006623 B = 0.005751 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4226.822360 B = 4867.661146 C = 7768.595974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.383 6.383 3 C 0.092 3.908 4 H 0.121 0.879 5 C 0.489 3.511 6 O -0.580 6.580 7 N -0.698 5.698 8 C 0.146 3.854 9 H 0.060 0.940 10 C 0.142 3.858 11 N -0.740 5.740 12 C -0.241 4.241 13 H 0.078 0.922 14 C -0.074 4.074 15 N -0.966 5.966 16 Si 0.971 3.029 17 H -0.292 1.292 18 H -0.298 1.298 19 H -0.264 1.264 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.112 4.112 25 C -0.083 4.083 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.114 4.114 29 C -0.107 4.107 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.099 0.901 33 H 0.408 0.592 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.371 0.629 37 H 0.247 0.753 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.038 0.962 47 H 0.034 0.966 48 H 0.095 0.905 49 H 0.049 0.951 50 H 0.046 0.954 51 H 0.090 0.910 52 H 0.072 0.928 53 H 0.090 0.910 54 H 0.049 0.951 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.836 11.175 -10.542 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C 0.031 3.969 4 H 0.138 0.862 5 C 0.276 3.724 6 O -0.459 6.459 7 N -0.352 5.352 8 C 0.041 3.959 9 H 0.078 0.922 10 C 0.015 3.985 11 N -0.382 5.382 12 C -0.373 4.373 13 H 0.096 0.904 14 C -0.267 4.267 15 N -0.617 5.617 16 Si 0.800 3.200 17 H -0.219 1.219 18 H -0.225 1.225 19 H -0.189 1.189 20 C -0.108 4.108 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.150 4.150 25 C -0.102 4.102 26 C -0.157 4.157 27 C -0.157 4.157 28 C -0.151 4.151 29 C -0.145 4.145 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.117 0.883 33 H 0.247 0.753 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.203 0.797 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.114 0.886 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.109 0.891 52 H 0.091 0.909 53 H 0.108 0.892 54 H 0.068 0.932 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.783 10.571 -9.852 22.147 hybrid contribution 1.385 -0.796 0.514 1.679 sum -15.398 9.775 -9.338 20.490 Atomic orbital electron populations 1.23034 0.79384 1.04225 1.00502 1.87991 1.21666 1.26087 1.94268 1.22253 0.97225 0.86696 0.90706 0.86163 1.21903 0.76011 0.81623 0.92878 1.90670 1.52507 1.55117 1.47608 1.45963 1.65495 1.14493 1.09276 1.21257 0.94713 0.96380 0.83565 0.92207 1.21201 0.88807 0.90567 0.97924 1.42505 1.03573 1.12490 1.79645 1.19616 0.84739 0.97574 1.35395 0.90440 1.25555 1.02243 0.95858 1.03014 1.69886 1.35048 1.03456 1.53294 0.85179 0.80472 0.77570 0.76763 1.21923 1.22458 1.18904 1.22056 0.94674 0.95757 0.98308 1.22415 0.98218 1.00611 0.94580 1.22463 0.93399 0.99167 1.00201 1.22357 0.99058 0.98738 0.96070 1.22113 0.93750 1.00403 0.98736 1.21721 0.92705 0.98499 0.97267 1.22468 1.00325 0.94344 0.98553 1.22443 0.98077 1.00936 0.94268 1.22374 0.99639 0.96131 0.96987 1.22054 1.02222 0.98247 0.91953 0.90841 0.95274 0.88284 0.75337 0.94651 0.95405 0.79702 0.94435 0.88737 0.93428 0.90371 0.89722 0.91209 0.90089 0.93545 0.89819 0.94288 0.94736 0.88637 0.93237 0.93534 0.89104 0.90911 0.89156 0.93228 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.84 113.37 1.23 1.80 16 2 O -0.38 -12.52 9.00 -129.99 -1.17 -13.69 16 3 C 0.09 2.77 1.95 29.85 0.06 2.82 16 4 H 0.12 2.51 7.57 -2.39 -0.02 2.50 16 5 C 0.49 18.27 6.14 87.66 0.54 18.81 16 6 O -0.58 -27.78 15.84 15.96 0.25 -27.53 16 7 N -0.70 -22.54 3.51 -442.52 -1.55 -24.10 16 8 C 0.15 5.01 1.77 44.99 0.08 5.09 16 9 H 0.06 2.56 6.84 -2.39 -0.02 2.54 16 10 C 0.14 5.73 5.69 86.38 0.49 6.22 16 11 N -0.74 -39.15 5.43 -343.47 -1.87 -41.02 16 12 C -0.24 -13.82 9.99 84.03 0.84 -12.99 16 13 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 14 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 15 N -0.97 -62.48 13.06 21.65 0.28 -62.20 16 16 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 17 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 19 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 20 C -0.09 -2.14 2.69 -10.07 -0.03 -2.16 16 21 C -0.12 -2.77 5.47 31.67 0.17 -2.60 16 22 C -0.11 -2.08 6.91 31.89 0.22 -1.86 16 23 C -0.12 -2.47 6.83 31.67 0.22 -2.25 16 24 C -0.11 -2.46 6.17 31.32 0.19 -2.27 16 25 C -0.08 -2.59 2.69 -10.06 -0.03 -2.62 16 26 C -0.12 -3.18 4.55 31.67 0.14 -3.04 16 27 C -0.12 -2.73 6.91 31.88 0.22 -2.51 16 28 C -0.11 -2.16 6.83 31.67 0.22 -1.94 16 29 C -0.11 -2.67 6.17 31.32 0.19 -2.48 16 30 H 0.07 1.18 7.99 -2.38 -0.02 1.16 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.41 11.01 5.79 -92.71 -0.54 10.48 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.03 1.14 7.55 -2.39 -0.02 1.12 16 36 H 0.37 22.00 7.14 -92.71 -0.66 21.34 16 37 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.32 7.80 -2.39 -0.02 1.30 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.04 1.07 6.68 -2.39 -0.02 1.05 16 47 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.10 1.83 6.72 -2.39 -0.02 1.81 16 49 H 0.05 1.73 7.87 -2.39 -0.02 1.71 16 50 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 52 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 55 H 0.08 1.78 7.20 -2.39 -0.02 1.76 16 Total: -1.00 -78.92 420.38 2.86 -76.06 By element: Atomic # 1 Polarization: 49.02 SS G_CDS: -0.34 Total: 48.68 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.23 Total: -5.93 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -3.14 Total: -127.31 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.92 Total: -41.22 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -78.92 2.86 -76.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500123157.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.474 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds