Wall clock time and date at job start Tue Mar 31 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47300 * 2 1 4 4 C 1.42894 * 114.00286 * 184.64212 * 3 2 1 5 5 H 1.09000 * 109.47220 * 329.84415 * 4 3 2 6 6 C 1.50707 * 109.47078 * 89.84002 * 4 3 2 7 7 O 1.21282 * 119.99919 * 5.00507 * 6 4 3 8 8 N 1.34778 * 120.00038 * 185.00093 * 6 4 3 9 9 C 1.46494 * 119.99903 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47111 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.46764 * 55.00358 * 10 9 8 12 12 C 1.53004 * 109.46986 * 174.99916 * 10 9 8 13 13 C 1.53002 * 109.46986 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46792 * 300.00161 * 13 12 10 15 15 H 1.09003 * 109.47503 * 299.99673 * 14 13 12 16 16 C 1.53002 * 109.46792 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.47335 * 64.99847 * 16 14 13 18 18 C 1.36933 * 120.00102 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00393 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99681 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00359 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99680 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46980 * 89.99925 * 22 20 18 24 24 H 1.48499 * 109.47233 * 209.99891 * 22 20 18 25 25 H 1.48505 * 109.47641 * 330.00154 * 22 20 18 26 26 C 1.52996 * 109.47550 * 60.00367 * 14 13 12 27 27 C 1.52998 * 109.47127 * 294.99906 * 10 9 8 28 28 C 1.53001 * 109.47509 * 209.84296 * 4 3 2 29 29 C 1.53001 * 117.50109 * 132.11173 * 28 4 3 30 30 C 1.52991 * 117.49748 * 63.48573 * 28 4 3 31 31 H 1.09005 * 109.46511 * 60.00217 * 1 2 3 32 32 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47365 * 300.00359 * 1 2 3 34 34 H 1.09002 * 109.47365 * 239.99641 * 2 1 3 35 35 H 1.09005 * 109.46753 * 119.99288 * 2 1 3 36 36 H 0.97001 * 119.99579 * 0.02562 * 8 6 4 37 37 H 1.09004 * 109.47201 * 59.99682 * 9 8 6 38 38 H 1.08998 * 109.47441 * 300.00297 * 9 8 6 39 39 H 1.08997 * 109.47435 * 300.00152 * 12 10 9 40 40 H 1.09004 * 109.46663 * 60.00197 * 12 10 9 41 41 H 1.09000 * 109.47125 * 59.99830 * 13 12 10 42 42 H 1.08997 * 109.46984 * 180.02562 * 13 12 10 43 43 H 1.09007 * 109.47243 * 185.00263 * 16 14 13 44 44 H 1.09004 * 109.47362 * 304.99685 * 16 14 13 45 45 H 0.97002 * 119.99716 * 0.02562 * 17 16 14 46 46 H 0.97000 * 119.99852 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.47498 * 179.97438 * 26 14 13 48 48 H 1.09003 * 109.47285 * 59.99172 * 26 14 13 49 49 H 1.09001 * 109.47031 * 300.00477 * 27 10 9 50 50 H 1.09002 * 109.47220 * 59.99660 * 27 10 9 51 51 H 1.08999 * 115.54589 * 277.82239 * 28 4 3 52 52 H 1.09003 * 117.49767 * 359.97438 * 29 28 4 53 53 H 1.08997 * 117.49603 * 145.02202 * 29 28 4 54 54 H 1.09005 * 117.50236 * 214.98090 * 30 28 4 55 55 H 1.08997 * 117.50352 * 359.97438 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4268 1.4616 -0.1056 5 1 3.8965 0.5913 0.3528 6 6 3.8181 1.5361 -1.5591 7 8 2.9612 1.5870 -2.4159 8 7 5.1202 1.5464 -1.9068 9 6 5.5005 1.6194 -3.3197 10 6 7.0259 1.6153 -3.4381 11 1 7.4278 0.7420 -2.9245 12 6 7.4226 1.5657 -4.9150 13 6 8.9480 1.5623 -5.0335 14 6 9.5118 2.8339 -4.3963 15 1 9.1095 3.7070 -4.9101 16 6 11.0372 2.8308 -4.5153 17 7 11.4170 2.9041 -5.9283 18 6 12.7398 2.9154 -6.2821 19 1 13.5032 2.8697 -5.5195 20 6 13.0995 2.9854 -7.6210 21 7 12.1693 3.0415 -8.5504 22 14 14.9040 3.0014 -8.1036 23 1 15.3745 1.6076 -8.3066 24 1 15.0727 3.7693 -9.3634 25 1 15.6995 3.6401 -7.0244 26 6 9.1152 2.8835 -2.9194 27 6 7.5903 2.8866 -2.8008 28 6 3.8914 2.7297 0.6133 29 6 5.0733 2.6030 1.5766 30 6 3.6595 2.8108 2.1233 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 5.8055 1.5054 -1.2215 37 1 5.1042 2.5365 -3.7557 38 1 5.0929 0.7592 -3.8506 39 1 7.0205 0.6601 -5.3691 40 1 7.0206 2.4391 -5.4286 41 1 9.3504 0.6893 -4.5196 42 1 9.2306 1.5275 -6.0856 43 1 11.4449 3.6911 -3.9843 44 1 11.4338 1.9137 -4.0796 45 1 10.7313 2.9455 -6.6133 46 1 12.4207 3.0900 -9.4860 47 1 9.5172 3.7891 -2.4654 48 1 9.5175 2.0104 -2.4056 49 1 7.1882 3.7599 -3.3145 50 1 7.3076 2.9219 -1.7487 51 1 3.8052 3.6531 0.0405 52 1 5.5197 1.6160 1.6985 53 1 5.7651 3.4431 1.6376 54 1 3.4213 3.7877 2.5443 55 1 3.1756 1.9610 2.6047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501178929.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:23 Heat of formation + Delta-G solvation = -99.004897 kcal Electronic energy + Delta-G solvation = -29665.425433 eV Core-core repulsion = 25701.314573 eV Total energy + Delta-G solvation = -3964.110860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32059 -40.05112 -38.81704 -37.52428 -36.89036 -35.52814 -33.65001 -32.37945 -31.88176 -31.42369 -29.30555 -27.57500 -25.67587 -24.14096 -23.72743 -23.40071 -23.13394 -22.34182 -21.52231 -21.32692 -20.62395 -19.14614 -18.75617 -18.06900 -16.89733 -16.70314 -16.65899 -16.32525 -16.11886 -15.80080 -15.69497 -15.36729 -15.25419 -14.87108 -14.78321 -14.65978 -14.26503 -14.10495 -13.94126 -13.42444 -13.32396 -13.24964 -13.01299 -12.93169 -12.80091 -12.65912 -12.41986 -12.38299 -12.34159 -12.08729 -12.04404 -11.94633 -11.88649 -11.76846 -11.66478 -11.33528 -11.30880 -11.11139 -10.99679 -10.94679 -10.79449 -10.27772 -10.10232 -8.97582 -7.94789 -5.23006 1.46498 1.48492 1.50686 1.56991 2.01752 2.43702 2.56276 3.19184 3.38519 3.55369 3.65541 3.77670 3.78126 3.83213 3.84851 4.04253 4.07690 4.14609 4.15727 4.19878 4.26259 4.32523 4.44293 4.46757 4.54731 4.57591 4.61055 4.64740 4.68488 4.73515 4.80490 4.84189 4.85567 4.96315 5.00172 5.05846 5.09692 5.12458 5.18095 5.20740 5.23606 5.25173 5.30479 5.32082 5.33270 5.40228 5.46946 5.49831 5.61592 5.68673 6.05017 6.27866 6.54820 7.21063 7.33790 8.12349 8.34892 9.28874 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.001757 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.920961 B =15933.123076 C =16733.541750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.376 6.376 4 C 0.111 3.889 5 H 0.112 0.888 6 C 0.487 3.513 7 O -0.578 6.578 8 N -0.706 5.706 9 C 0.129 3.871 10 C -0.083 4.083 11 H 0.093 0.907 12 C -0.106 4.106 13 C -0.102 4.102 14 C -0.086 4.086 15 H 0.052 0.948 16 C 0.153 3.847 17 N -0.745 5.745 18 C -0.246 4.246 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.269 1.269 26 C -0.102 4.102 27 C -0.106 4.106 28 C -0.174 4.174 29 C -0.150 4.150 30 C -0.160 4.160 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.015 0.985 44 H 0.020 0.980 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.087 0.913 51 H 0.097 0.903 52 H 0.117 0.883 53 H 0.112 0.888 54 H 0.101 0.899 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 -6.160 26.457 33.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.294 6.294 4 C 0.050 3.950 5 H 0.130 0.870 6 C 0.274 3.726 7 O -0.458 6.458 8 N -0.360 5.360 9 C 0.005 3.995 10 C -0.102 4.102 11 H 0.111 0.889 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.105 4.105 15 H 0.070 0.930 16 C 0.027 3.973 17 N -0.388 5.388 18 C -0.378 4.378 19 H 0.093 0.907 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.194 1.194 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.192 4.192 29 C -0.187 4.187 30 C -0.197 4.197 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.033 0.967 44 H 0.038 0.962 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.105 0.895 51 H 0.115 0.885 52 H 0.136 0.864 53 H 0.131 0.869 54 H 0.119 0.881 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.554 -5.965 25.918 33.612 hybrid contribution 1.111 0.047 -1.337 1.739 sum -19.442 -5.918 24.582 31.895 Atomic orbital electron populations 1.21733 0.92906 1.03348 1.02517 1.22748 0.96682 0.82787 1.00456 1.88005 1.19803 1.28082 1.93556 1.21574 0.83451 0.99971 0.90002 0.87005 1.21843 0.82690 0.75518 0.92562 1.90704 1.51119 1.50729 1.53223 1.45903 1.07042 1.73980 1.09091 1.21317 0.95078 1.01309 0.81809 1.21291 0.92371 1.00013 0.96487 0.88867 1.21456 0.94953 1.02037 0.95992 1.21398 0.95316 0.97493 0.99781 1.21243 0.93616 0.97852 0.97774 0.92971 1.20902 0.94266 0.97221 0.84896 1.42623 1.04121 1.88998 1.03025 1.19675 0.85490 1.40895 0.91740 0.90732 1.25583 1.01715 1.03802 0.95875 1.69823 1.33156 1.59473 0.99676 0.85127 0.79967 0.77367 0.77223 1.21350 1.22223 1.19395 1.21443 0.96122 1.02698 0.93701 1.21549 0.94495 0.96815 1.01454 1.21995 1.06770 0.96808 0.93665 1.23255 0.90746 1.05199 0.99485 1.22938 0.99605 1.04120 0.93086 0.93552 0.89079 0.91355 0.94470 0.90771 0.74632 0.92869 0.92321 0.91401 0.92592 0.91827 0.94530 0.96675 0.96243 0.79467 0.94072 0.91509 0.90719 0.92746 0.89451 0.88503 0.86448 0.86919 0.88091 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.74 6.43 71.98 0.46 1.20 16 3 O -0.38 -7.46 9.49 -129.99 -1.23 -8.69 16 4 C 0.11 1.67 2.69 29.85 0.08 1.75 16 5 H 0.11 0.99 7.61 -2.39 -0.02 0.97 16 6 C 0.49 10.19 7.11 87.66 0.62 10.81 16 7 O -0.58 -18.13 16.51 15.95 0.26 -17.87 16 8 N -0.71 -10.81 5.25 -463.06 -2.43 -13.24 16 9 C 0.13 2.41 5.06 86.38 0.44 2.85 16 10 C -0.08 -1.42 2.23 -10.79 -0.02 -1.45 16 11 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 12 C -0.11 -2.47 5.20 30.60 0.16 -2.31 16 13 C -0.10 -3.05 5.08 30.59 0.16 -2.89 16 14 C -0.09 -2.64 2.22 -10.79 -0.02 -2.66 16 15 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 16 C 0.15 6.11 5.65 86.38 0.49 6.60 16 17 N -0.74 -38.57 5.33 -343.43 -1.83 -40.40 16 18 C -0.25 -14.01 9.99 84.04 0.84 -13.17 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 21 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 22 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C -0.10 -2.16 5.20 30.58 0.16 -2.00 16 27 C -0.11 -1.77 5.07 30.58 0.16 -1.61 16 28 C -0.17 -2.08 5.31 -10.80 -0.06 -2.14 16 29 C -0.15 -0.87 10.18 30.60 0.31 -0.56 16 30 C -0.16 -1.41 10.21 30.59 0.31 -1.10 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 35 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.42 3.68 7.65 -92.71 -0.71 2.97 16 37 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 43 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.37 20.61 6.85 -92.71 -0.64 19.98 16 46 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.09 0.99 7.18 -2.39 -0.02 0.97 16 51 H 0.10 1.50 8.13 -2.39 -0.02 1.48 16 52 H 0.12 0.26 8.07 -2.39 -0.02 0.25 16 53 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 54 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 55 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -75.84 435.57 1.87 -73.97 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.50 Total: 29.64 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.29 Total: -11.97 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.98 Total: -113.75 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.97 Total: -26.56 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.84 1.87 -73.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501178929.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.038 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds