Wall clock time and date at job start Tue Mar 31 2020 22:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99825 * 2 1 4 4 H 1.09000 * 110.43376 * 328.91349 * 3 2 1 5 5 C 1.54268 * 110.48863 * 91.45779 * 3 2 1 6 6 C 1.53869 * 106.60115 * 142.28730 * 5 3 2 7 7 C 1.54270 * 106.63967 * 359.97438 * 6 5 3 8 8 C 1.54895 * 110.48696 * 206.23315 * 3 2 1 9 9 H 1.09003 * 110.74950 * 321.87659 * 8 3 2 10 10 C 1.50691 * 110.75703 * 85.06277 * 8 3 2 11 11 O 1.21286 * 120.00068 * 0.02562 * 10 8 3 12 12 N 1.34781 * 120.00205 * 180.02562 * 10 8 3 13 13 C 1.46494 * 120.00321 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.47190 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.47350 * 304.99729 * 14 13 12 16 16 C 1.53007 * 109.47135 * 64.99979 * 14 13 12 17 17 C 1.52991 * 109.47279 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46987 * 299.99995 * 17 16 14 19 19 H 1.08995 * 109.46829 * 299.99984 * 18 17 16 20 20 C 1.53000 * 109.47105 * 179.97438 * 18 17 16 21 21 N 1.46507 * 109.47111 * 65.00036 * 20 18 17 22 22 C 1.36931 * 120.00090 * 180.02562 * 21 20 18 23 23 H 1.08008 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00150 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00072 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00245 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47153 * 59.99844 * 26 24 22 28 28 H 1.48507 * 109.47174 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47210 * 299.99484 * 26 24 22 30 30 C 1.52999 * 109.47496 * 60.00105 * 18 17 16 31 31 C 1.53000 * 109.46772 * 299.99994 * 30 18 17 32 32 H 1.09006 * 109.47034 * 299.99994 * 1 2 3 33 33 H 1.09000 * 109.47400 * 59.99962 * 1 2 3 34 34 H 1.09002 * 109.46882 * 180.02562 * 1 2 3 35 35 H 1.08999 * 110.03048 * 23.00013 * 5 3 2 36 36 H 1.09001 * 110.06994 * 261.59963 * 5 3 2 37 37 H 1.09002 * 110.03268 * 119.28653 * 6 5 3 38 38 H 1.08995 * 110.03391 * 240.66959 * 6 5 3 39 39 H 1.08997 * 110.48585 * 95.09409 * 7 6 5 40 40 H 1.09002 * 110.48442 * 217.73292 * 7 6 5 41 41 H 0.97000 * 119.99592 * 0.02562 * 12 10 8 42 42 H 1.09002 * 109.47251 * 299.99990 * 13 12 10 43 43 H 1.09005 * 109.47146 * 59.99691 * 13 12 10 44 44 H 1.08996 * 109.46700 * 300.00289 * 16 14 13 45 45 H 1.09001 * 109.46818 * 59.99826 * 16 14 13 46 46 H 1.09000 * 109.47231 * 180.02562 * 17 16 14 47 47 H 1.08995 * 109.47324 * 59.99677 * 17 16 14 48 48 H 1.08995 * 109.47311 * 184.99447 * 20 18 17 49 49 H 1.08995 * 109.47350 * 305.00203 * 20 18 17 50 50 H 0.96996 * 119.99780 * 359.97438 * 21 20 18 51 51 H 0.96997 * 119.99900 * 179.97438 * 25 24 22 52 52 H 1.08990 * 109.47167 * 180.02562 * 30 18 17 53 53 H 1.08997 * 109.46827 * 59.99413 * 30 18 17 54 54 H 1.08995 * 109.47350 * 299.99996 * 31 30 18 55 55 H 1.09000 * 109.47086 * 179.97438 * 31 30 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3658 2.0089 -0.5274 5 6 2.2634 1.7838 1.4446 6 6 3.5942 2.5559 1.4252 7 6 4.1046 2.5199 -0.0302 8 6 3.4197 1.2714 -0.6414 9 1 3.9497 0.3612 -0.3609 10 6 3.3273 1.3928 -2.1405 11 8 2.2437 1.4989 -2.6748 12 7 4.4490 1.3834 -2.8878 13 6 4.3593 1.5020 -4.3452 14 6 5.7653 1.4650 -4.9474 15 1 6.3789 2.2383 -4.4855 16 6 6.3941 0.0939 -4.6908 17 6 7.8003 0.0570 -5.2924 18 6 7.7167 0.3057 -6.7998 19 1 7.1033 -0.4676 -7.2621 20 6 9.1230 0.2695 -7.4014 21 7 9.6796 -1.0785 -7.2612 22 6 10.9367 -1.3523 -7.7299 23 1 11.5179 -0.5746 -8.2033 24 6 11.4638 -2.6296 -7.5975 25 7 10.7555 -3.5774 -7.0211 26 14 13.1785 -3.0033 -8.2375 27 1 14.1650 -2.1347 -7.5465 28 1 13.5050 -4.4282 -7.9755 29 1 13.2288 -2.7443 -9.6988 30 6 7.0880 1.6767 -7.0565 31 6 5.6817 1.7135 -6.4548 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 2.3386 0.9268 2.1139 36 1 1.4555 2.4402 1.7683 37 1 3.4322 3.5872 1.7387 38 1 4.3151 2.0741 2.0856 39 1 3.8009 3.4207 -0.5634 40 1 5.1889 2.4101 -0.0516 41 1 5.3156 1.2982 -2.4606 42 1 3.7719 0.6738 -4.7417 43 1 3.8782 2.4452 -4.6041 44 1 6.4539 -0.0830 -3.6169 45 1 5.7804 -0.6795 -5.1528 46 1 8.2481 -0.9198 -5.1099 47 1 8.4137 0.8304 -4.8301 48 1 9.0733 0.5339 -8.4576 49 1 9.7606 0.9820 -6.8780 50 1 9.1578 -1.7767 -6.8357 51 1 11.1237 -4.4700 -6.9289 52 1 7.0281 1.8536 -8.1303 53 1 7.7014 2.4500 -6.5941 54 1 5.0684 0.9402 -6.9171 55 1 5.2339 2.6904 -6.6373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501181208.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:25 Heat of formation + Delta-G solvation = -134.546201 kcal Electronic energy + Delta-G solvation = -29738.457747 eV Core-core repulsion = 25772.805700 eV Total energy + Delta-G solvation = -3965.652047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33852 -40.09279 -39.10978 -36.95929 -36.82808 -35.54912 -33.64049 -31.82857 -31.59964 -30.34645 -29.21720 -27.91418 -27.01280 -25.74068 -24.14147 -23.56175 -22.62915 -21.56590 -21.29990 -20.99412 -20.56003 -19.14192 -18.58037 -17.80056 -17.06644 -16.67543 -16.47820 -16.12406 -16.07173 -15.86532 -15.55309 -15.38868 -15.25344 -15.01802 -14.67176 -14.55371 -14.44651 -14.32570 -13.91084 -13.50084 -13.35852 -13.21888 -13.06934 -12.99866 -12.82684 -12.58591 -12.50691 -12.40150 -12.32506 -12.15074 -12.11931 -11.94414 -11.86683 -11.75411 -11.68559 -11.33975 -11.31105 -11.06384 -10.92580 -10.82224 -10.72716 -10.52997 -10.06772 -8.97772 -7.94560 -5.22921 1.46413 1.49798 1.55979 1.61695 2.18104 2.56407 2.83378 3.38333 3.39022 3.55501 3.65917 3.78627 3.83638 3.89104 3.99718 4.18200 4.23208 4.28815 4.35516 4.38922 4.42123 4.44004 4.45463 4.51518 4.56531 4.60498 4.62389 4.63668 4.66617 4.67552 4.79209 4.81749 4.87125 4.95919 4.99152 5.01676 5.06721 5.11105 5.16799 5.21656 5.23599 5.25050 5.31543 5.34916 5.37749 5.41864 5.46801 5.51663 5.61377 5.68343 6.25226 6.28008 6.54506 7.23681 7.33872 8.12055 8.35108 9.28884 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.001839 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.643187 B =15225.614081 C =15781.496835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.404 6.404 3 C 0.095 3.905 4 H 0.063 0.937 5 C -0.144 4.144 6 C -0.116 4.116 7 C -0.106 4.106 8 C -0.113 4.113 9 H 0.118 0.882 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.715 5.715 13 C 0.129 3.871 14 C -0.084 4.084 15 H 0.093 0.907 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.086 4.086 19 H 0.052 0.948 20 C 0.154 3.846 21 N -0.744 5.744 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.975 3.025 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.278 1.278 30 C -0.102 4.102 31 C -0.105 4.105 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.414 0.586 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.014 0.986 49 H 0.020 0.980 50 H 0.374 0.626 51 H 0.251 0.749 52 H 0.065 0.935 53 H 0.072 0.928 54 H 0.058 0.942 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.783 16.802 17.808 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.037 3.963 4 H 0.081 0.919 5 C -0.182 4.182 6 C -0.154 4.154 7 C -0.144 4.144 8 C -0.134 4.134 9 H 0.136 0.864 10 C 0.306 3.694 11 O -0.465 6.465 12 N -0.367 5.367 13 C 0.006 3.994 14 C -0.102 4.102 15 H 0.111 0.889 16 C -0.144 4.144 17 C -0.140 4.140 18 C -0.105 4.105 19 H 0.070 0.930 20 C 0.027 3.973 21 N -0.387 5.387 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.803 3.197 27 H -0.203 1.203 28 H -0.221 1.221 29 H -0.205 1.205 30 C -0.140 4.140 31 C -0.143 4.143 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.032 0.968 49 H 0.038 0.962 50 H 0.206 0.794 51 H 0.060 0.940 52 H 0.084 0.916 53 H 0.091 0.909 54 H 0.077 0.923 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.274 16.768 17.329 30.870 hybrid contribution 0.861 -1.020 -0.400 1.393 sum -18.413 15.748 16.929 29.557 Atomic orbital electron populations 1.22853 0.79985 1.03447 1.00276 1.87836 1.21094 1.28283 1.95074 1.22909 0.92996 0.84524 0.95849 0.91924 1.22641 0.99155 1.00880 0.95534 1.22048 0.95968 1.01327 0.96040 1.22333 1.01420 0.94677 0.95975 1.22438 0.98233 1.03039 0.89725 0.86414 1.20846 0.83652 0.74764 0.90095 1.90667 1.29388 1.51427 1.75034 1.45969 1.09422 1.73834 1.07473 1.21343 0.97291 1.01428 0.79383 1.21313 0.94381 0.97948 0.96602 0.88869 1.21552 0.95193 0.96942 1.00713 1.21408 0.97024 1.00884 0.94702 1.21241 0.94741 0.98467 0.96056 0.92965 1.20892 0.93396 0.86238 0.96750 1.42606 1.16195 1.08415 1.71494 1.19626 0.93089 0.95012 1.30127 0.90817 1.25590 1.02582 0.96118 1.02721 1.69817 1.39036 1.02414 1.50841 0.85194 0.79833 0.76418 0.78213 1.20266 1.22123 1.20465 1.21439 0.96155 0.95321 1.01043 1.21460 0.96509 1.02587 0.93770 0.92558 0.94750 0.88805 0.90577 0.90571 0.90032 0.89963 0.91104 0.88141 0.74928 0.93125 0.91389 0.91043 0.93102 0.94510 0.91669 0.96840 0.96229 0.79427 0.94027 0.91637 0.90924 0.92315 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.87 113.37 1.23 1.74 16 2 O -0.40 -8.76 10.41 -148.98 -1.55 -10.31 16 3 C 0.10 1.71 2.40 31.67 0.08 1.78 16 4 H 0.06 1.30 7.16 -2.39 -0.02 1.29 16 5 C -0.14 -1.70 6.56 31.32 0.21 -1.50 16 6 C -0.12 -0.96 6.80 31.32 0.21 -0.75 16 7 C -0.11 -1.03 6.27 31.70 0.20 -0.83 16 8 C -0.11 -1.79 3.00 -10.22 -0.03 -1.82 16 9 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 10 C 0.52 11.10 7.13 87.65 0.63 11.72 16 11 O -0.58 -17.50 15.73 -3.05 -0.05 -17.55 16 12 N -0.72 -12.14 5.28 -463.06 -2.45 -14.59 16 13 C 0.13 2.41 5.07 86.38 0.44 2.84 16 14 C -0.08 -1.46 2.23 -10.79 -0.02 -1.49 16 15 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 16 C -0.11 -2.37 5.08 30.59 0.16 -2.22 16 17 C -0.10 -3.01 5.08 30.59 0.16 -2.85 16 18 C -0.09 -2.69 2.23 -10.79 -0.02 -2.72 16 19 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 20 C 0.15 6.20 5.65 86.38 0.49 6.69 16 21 N -0.74 -38.66 5.33 -343.45 -1.83 -40.49 16 22 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 23 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 25 N -0.97 -60.31 13.06 21.65 0.28 -60.02 16 26 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 30 C -0.10 -2.32 5.20 30.59 0.16 -2.16 16 31 C -0.11 -1.96 5.21 30.60 0.16 -1.80 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.03 0.63 8.10 -2.39 -0.02 0.61 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.07 0.75 8.04 -2.39 -0.02 0.73 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.41 4.97 7.65 -92.71 -0.71 4.26 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 44 H 0.07 1.38 7.18 -2.39 -0.02 1.37 16 45 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.04 1.35 7.18 -2.39 -0.02 1.33 16 47 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.37 20.63 6.85 -92.71 -0.63 19.99 16 51 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 52 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 54 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 55 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.71 426.00 1.27 -72.44 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.50 Total: 32.50 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.33 Total: -10.69 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.99 Total: -115.10 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.60 Total: -27.85 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.71 1.27 -72.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501181208.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.107 kcal (2) G-P(sol) polarization free energy of solvation -73.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds