Wall clock time and date at job start Tue Mar 31 2020 22:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 114.00094 * 2 1 4 4 H 1.09000 * 110.05450 * 29.96616 * 3 2 1 5 5 C 1.54263 * 110.03243 * 268.54760 * 3 2 1 6 6 C 1.54888 * 104.19283 * 217.10510 * 5 3 2 7 7 C 1.54893 * 102.74816 * 37.94398 * 6 5 3 8 8 C 1.53870 * 110.03105 * 151.37921 * 3 2 1 9 9 H 1.08997 * 110.03338 * 238.57420 * 8 3 2 10 10 C 1.50704 * 110.03224 * 0.02562 * 8 3 2 11 11 O 1.21283 * 120.00217 * 85.81155 * 10 8 3 12 12 N 1.34782 * 119.99724 * 265.81137 * 10 8 3 13 13 C 1.46497 * 119.99729 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47036 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.47132 * 55.00014 * 14 13 12 16 16 C 1.53006 * 109.46958 * 174.99790 * 14 13 12 17 17 C 1.53004 * 109.46654 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.46914 * 299.99852 * 17 16 14 19 19 H 1.09004 * 109.47234 * 300.00160 * 18 17 16 20 20 C 1.53004 * 109.46949 * 180.02562 * 18 17 16 21 21 N 1.46501 * 109.46981 * 175.00053 * 20 18 17 22 22 C 1.36942 * 120.00133 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99515 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00211 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99955 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99990 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47062 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47204 * 120.00019 * 26 24 22 29 29 H 1.48491 * 109.47277 * 240.00142 * 26 24 22 30 30 C 1.52998 * 109.47481 * 60.00368 * 18 17 16 31 31 C 1.52997 * 109.46949 * 294.99850 * 14 13 12 32 32 H 1.08993 * 109.47564 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47042 * 300.00460 * 1 2 3 34 34 H 1.09001 * 109.47270 * 59.99486 * 1 2 3 35 35 H 1.08998 * 110.48850 * 335.78183 * 5 3 2 36 36 H 1.08996 * 110.48809 * 98.29369 * 5 3 2 37 37 H 1.09002 * 110.75538 * 156.25795 * 6 5 3 38 38 H 1.09002 * 110.75815 * 279.44295 * 6 5 3 39 39 H 1.08997 * 110.48226 * 80.73794 * 7 6 5 40 40 H 1.09005 * 110.48227 * 203.24034 * 7 6 5 41 41 H 0.96995 * 120.00224 * 359.97438 * 12 10 8 42 42 H 1.09010 * 109.47001 * 299.99677 * 13 12 10 43 43 H 1.08999 * 109.47907 * 60.00040 * 13 12 10 44 44 H 1.08997 * 109.46993 * 300.00176 * 16 14 13 45 45 H 1.08995 * 109.47016 * 60.00153 * 16 14 13 46 46 H 1.08995 * 109.47473 * 60.00202 * 17 16 14 47 47 H 1.09004 * 109.46724 * 180.02562 * 17 16 14 48 48 H 1.08994 * 109.47034 * 295.00128 * 20 18 17 49 49 H 1.08997 * 109.47021 * 55.00347 * 20 18 17 50 50 H 0.97000 * 120.00461 * 359.97438 * 21 20 18 51 51 H 0.96996 * 119.99920 * 179.97438 * 25 24 22 52 52 H 1.09004 * 109.47056 * 59.99683 * 30 18 17 53 53 H 1.08992 * 109.47336 * 180.02562 * 30 18 17 54 54 H 1.09004 * 109.47234 * 299.99765 * 31 14 13 55 55 H 1.08997 * 109.47238 * 59.99989 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3520 2.0078 0.5114 5 6 2.2588 1.7733 -1.4488 6 6 3.5954 2.5522 -1.3724 7 6 4.4193 1.7187 -0.3597 8 6 3.3839 1.2708 0.6925 9 1 3.3923 1.9562 1.5399 10 6 3.6929 -0.1293 1.1565 11 8 4.2085 -0.9205 0.3956 12 7 3.3962 -0.5022 2.4173 13 6 3.6971 -1.8631 2.8686 14 6 3.2647 -2.0239 4.3275 15 1 2.2129 -1.7558 4.4263 16 6 3.4634 -3.4777 4.7609 17 6 3.0304 -3.6386 6.2196 18 6 3.8754 -2.7220 7.1064 19 1 4.9274 -2.9900 7.0080 20 6 3.4429 -2.8833 8.5652 21 7 4.3292 -2.0972 9.4271 22 6 4.1345 -2.0879 10.7825 23 1 3.3273 -2.6596 11.2161 24 6 4.9746 -1.3435 11.5993 25 7 5.9586 -0.6471 11.0709 26 14 4.7085 -1.3302 13.4481 27 1 3.5449 -2.1883 13.7870 28 1 5.9221 -1.8521 14.1267 29 1 4.4476 0.0598 13.9007 30 6 3.6769 -1.2682 6.6730 31 6 4.1102 -1.1073 5.2139 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 2.3543 0.9162 -2.1154 36 1 1.4527 2.4267 -1.7823 37 1 4.0864 2.5732 -2.3454 38 1 3.4322 3.5642 -1.0019 39 1 4.8637 0.8528 -0.8504 40 1 5.1926 2.3337 0.1007 41 1 2.9842 0.1307 3.0260 42 1 3.1577 -2.5791 2.2484 43 1 4.7686 -2.0450 2.7855 44 1 2.8611 -4.1307 4.1293 45 1 4.5152 -3.7458 4.6621 46 1 1.9785 -3.3706 6.3181 47 1 3.1723 -4.6743 6.5286 48 1 2.4177 -2.5317 8.6811 49 1 3.5006 -3.9346 8.8471 50 1 5.0544 -1.5840 9.0378 51 1 6.5454 -0.1267 11.6416 52 1 2.6249 -1.0001 6.7714 53 1 4.2792 -0.6152 7.3044 54 1 5.1621 -1.3754 5.1151 55 1 3.9687 -0.0716 4.9051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501181209.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:30 Heat of formation + Delta-G solvation = -131.718350 kcal Electronic energy + Delta-G solvation = -30069.588377 eV Core-core repulsion = 26104.058955 eV Total energy + Delta-G solvation = -3965.529422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32831 -40.09645 -39.03139 -37.02519 -36.61633 -35.49320 -33.62815 -31.81656 -31.59641 -30.33257 -29.19119 -27.93102 -26.96343 -25.73626 -24.13748 -23.52286 -22.44344 -21.75708 -21.54376 -20.85296 -20.40936 -19.14610 -18.59107 -17.50180 -17.05440 -16.68749 -16.45630 -16.22411 -16.13076 -15.70834 -15.49766 -15.33839 -15.23957 -14.90155 -14.72355 -14.66885 -14.53680 -14.36858 -13.88528 -13.50170 -13.37218 -13.10922 -13.00606 -12.87802 -12.62457 -12.53144 -12.41266 -12.38050 -12.28600 -12.06638 -11.98561 -11.94578 -11.86021 -11.77482 -11.75189 -11.51545 -11.31362 -11.06127 -10.92673 -10.81971 -10.67165 -10.52222 -9.97633 -8.97911 -7.95153 -5.23354 1.46510 1.47485 1.57668 1.75744 2.29738 2.55924 2.83459 3.38118 3.50862 3.60812 3.66363 3.79257 3.82369 3.88836 4.00014 4.21448 4.23569 4.29882 4.36448 4.39733 4.42429 4.44333 4.48688 4.56535 4.56900 4.60472 4.62609 4.63699 4.67438 4.73342 4.79882 4.88283 4.88917 4.95895 4.98198 5.04062 5.07289 5.10837 5.16316 5.19134 5.21842 5.24764 5.31435 5.34764 5.42085 5.45093 5.48045 5.58080 5.61379 5.68437 6.27903 6.28586 6.66261 7.33694 7.38367 8.11577 8.34793 9.28737 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.001912 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.226380 B =14641.698453 C =15195.346694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.093 3.907 4 H 0.097 0.903 5 C -0.145 4.145 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.115 4.115 9 H 0.126 0.874 10 C 0.532 3.468 11 O -0.585 6.585 12 N -0.717 5.717 13 C 0.133 3.867 14 C -0.083 4.083 15 H 0.088 0.912 16 C -0.105 4.105 17 C -0.101 4.101 18 C -0.086 4.086 19 H 0.053 0.947 20 C 0.154 3.846 21 N -0.744 5.744 22 C -0.244 4.244 23 H 0.074 0.926 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.974 3.026 27 H -0.266 1.266 28 H -0.294 1.294 29 H -0.292 1.292 30 C -0.102 4.102 31 C -0.105 4.105 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.410 0.590 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.019 0.981 49 H 0.014 0.986 50 H 0.374 0.626 51 H 0.251 0.749 52 H 0.063 0.937 53 H 0.038 0.962 54 H 0.052 0.948 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.888 6.006 -27.223 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C 0.035 3.965 4 H 0.115 0.885 5 C -0.183 4.183 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.136 4.136 9 H 0.144 0.856 10 C 0.320 3.680 11 O -0.465 6.465 12 N -0.369 5.369 13 C 0.009 3.991 14 C -0.101 4.101 15 H 0.107 0.893 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.105 4.105 19 H 0.072 0.928 20 C 0.027 3.973 21 N -0.387 5.387 22 C -0.376 4.376 23 H 0.092 0.908 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.803 3.197 27 H -0.191 1.191 28 H -0.221 1.221 29 H -0.219 1.219 30 C -0.140 4.140 31 C -0.142 4.142 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.247 0.753 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.037 0.963 49 H 0.032 0.968 50 H 0.206 0.794 51 H 0.060 0.940 52 H 0.082 0.918 53 H 0.057 0.943 54 H 0.071 0.929 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.529 5.189 -27.592 30.351 hybrid contribution 0.235 0.455 1.451 1.539 sum -11.294 5.644 -26.140 29.030 Atomic orbital electron populations 1.22905 0.79760 1.03212 1.01010 1.88026 1.21177 1.28203 1.95100 1.22898 0.92432 0.84985 0.96145 0.88482 1.22893 0.99065 1.00208 0.96136 1.22413 0.94393 0.98978 0.99379 1.22365 0.97106 1.00047 0.95881 1.22258 0.96755 0.93681 1.00942 0.85648 1.20598 0.76181 0.90066 0.81149 1.90631 1.45463 1.55333 1.55092 1.45942 1.63244 1.14604 1.13071 1.21253 0.99875 0.83480 0.94461 1.21290 1.00751 0.96256 0.91837 0.89348 1.21457 1.01899 0.95342 0.95637 1.21437 0.99548 0.98883 0.94061 1.21235 0.99533 0.96381 0.93307 0.92848 1.20885 0.92896 0.93404 0.90068 1.42619 1.35948 1.56920 1.03211 1.19697 1.10574 1.22597 0.84740 0.90818 1.25581 0.98340 1.00571 1.02542 1.69827 1.20920 1.35957 1.35397 0.85061 0.77300 0.77114 0.80219 1.19085 1.22100 1.21869 1.21417 1.01109 0.95563 0.95906 1.21549 0.99297 0.99704 0.93683 0.89899 0.92612 0.92986 0.92474 0.89274 0.90674 0.88986 0.92488 0.89742 0.75349 0.92348 0.93092 0.90189 0.92197 0.91067 0.91615 0.96269 0.96826 0.79389 0.94025 0.91817 0.94349 0.92906 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 113.37 1.23 1.55 16 2 O -0.41 -7.60 8.81 -148.98 -1.31 -8.91 16 3 C 0.09 1.26 3.35 31.32 0.10 1.36 16 4 H 0.10 0.78 7.82 -2.39 -0.02 0.77 16 5 C -0.15 -1.77 6.55 31.67 0.21 -1.56 16 6 C -0.11 -1.20 6.91 31.89 0.22 -0.98 16 7 C -0.12 -1.78 6.31 31.67 0.20 -1.58 16 8 C -0.11 -1.75 3.29 -10.82 -0.04 -1.78 16 9 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 10 C 0.53 12.17 5.57 87.66 0.49 12.66 16 11 O -0.59 -18.87 15.73 -3.03 -0.05 -18.92 16 12 N -0.72 -13.52 5.28 -463.03 -2.45 -15.97 16 13 C 0.13 2.76 5.06 86.38 0.44 3.19 16 14 C -0.08 -1.56 2.22 -10.79 -0.02 -1.58 16 15 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 16 C -0.11 -2.09 5.20 30.60 0.16 -1.93 16 17 C -0.10 -2.39 5.20 30.59 0.16 -2.23 16 18 C -0.09 -2.70 2.22 -10.79 -0.02 -2.73 16 19 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 20 C 0.15 6.23 5.65 86.38 0.49 6.72 16 21 N -0.74 -38.61 5.33 -343.45 -1.83 -40.44 16 22 C -0.24 -13.92 9.99 84.03 0.84 -13.08 16 23 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 25 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 26 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 30 C -0.10 -3.02 5.08 30.61 0.16 -2.87 16 31 C -0.10 -2.38 5.08 30.61 0.16 -2.22 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.49 8.10 -2.39 -0.02 0.47 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 1.26 6.89 -2.39 -0.02 1.24 16 40 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.41 5.63 7.65 -92.71 -0.71 4.92 16 42 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.37 20.58 6.85 -92.71 -0.64 19.95 16 51 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 52 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.04 1.41 7.18 -2.39 -0.02 1.39 16 54 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 55 H 0.07 1.41 7.18 -2.39 -0.02 1.39 16 Total: -1.00 -74.99 423.74 1.41 -73.59 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.49 Total: 32.96 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 5.23 Total: -11.16 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.99 Total: -116.23 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -1.36 Total: -27.83 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.99 1.41 -73.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501181209.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.131 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds