Wall clock time and date at job start Tue Mar 31 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42899 * 109.47039 * 2 1 4 4 C 1.42907 * 114.00274 * 175.50964 * 3 2 1 5 5 H 1.08997 * 109.46631 * 325.19729 * 4 3 2 6 6 C 1.52994 * 109.47232 * 205.19691 * 4 3 2 7 7 C 1.50699 * 109.47452 * 64.99877 * 6 4 3 8 8 O 1.21281 * 120.00053 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00123 * 179.97438 * 7 6 4 10 10 C 1.47851 * 122.22879 * 0.02562 * 9 7 6 11 11 C 1.52720 * 111.05549 * 127.50764 * 10 9 7 12 12 C 1.53867 * 111.52203 * 48.54258 * 11 10 9 13 13 C 1.51078 * 107.34250 * 303.06087 * 12 11 10 14 14 H 1.08992 * 108.74070 * 308.53309 * 13 12 11 15 15 C 1.45729 * 122.22667 * 179.71178 * 9 7 6 16 16 H 1.08996 * 111.06589 * 119.47413 * 15 9 7 17 17 C 1.53136 * 115.92192 * 350.50347 * 15 9 7 18 18 C 1.55468 * 101.18452 * 206.28067 * 17 15 9 19 19 N 1.45025 * 119.19465 * 183.26155 * 13 12 11 20 20 C 1.36937 * 126.56266 * 28.81653 * 19 13 12 21 21 H 1.08000 * 119.99609 * 0.02562 * 20 19 13 22 22 C 1.38815 * 119.99852 * 179.97438 * 20 19 13 23 23 N 1.31614 * 120.00426 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99629 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47143 * 90.00508 * 24 22 20 26 26 H 1.48501 * 109.46961 * 210.00396 * 24 22 20 27 27 H 1.48496 * 109.47406 * 330.00355 * 24 22 20 28 28 C 1.53002 * 109.46920 * 85.19646 * 4 3 2 29 29 C 1.52995 * 109.47240 * 64.85791 * 28 4 3 30 30 C 1.52999 * 109.46728 * 184.86285 * 28 4 3 31 31 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47288 * 299.99074 * 1 2 3 33 33 H 1.08995 * 109.47731 * 59.99872 * 1 2 3 34 34 H 1.09000 * 109.47087 * 240.00178 * 2 1 3 35 35 H 1.08995 * 109.47731 * 120.00128 * 2 1 3 36 36 H 1.09006 * 109.47058 * 185.00182 * 6 4 3 37 37 H 1.09009 * 109.47128 * 304.99781 * 6 4 3 38 38 H 1.08997 * 109.16049 * 247.91231 * 10 9 7 39 39 H 1.09002 * 109.16096 * 7.10566 * 10 9 7 40 40 H 1.09007 * 109.06477 * 169.06450 * 11 10 9 41 41 H 1.09000 * 109.07217 * 288.00932 * 11 10 9 42 42 H 1.08997 * 109.88593 * 62.52972 * 12 11 10 43 43 H 1.09001 * 109.87911 * 183.60748 * 12 11 10 44 44 H 1.08997 * 111.00567 * 88.43704 * 17 15 9 45 45 H 1.08998 * 111.45232 * 324.31667 * 17 15 9 46 46 H 1.08997 * 109.96172 * 263.45934 * 18 17 15 47 47 H 1.09000 * 109.96034 * 142.22044 * 18 17 15 48 48 H 0.96998 * 120.00304 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.46771 * 304.85860 * 28 4 3 50 50 H 1.08999 * 109.46757 * 186.08535 * 29 28 4 51 51 H 1.09004 * 109.46881 * 66.09085 * 29 28 4 52 52 H 1.08994 * 109.47190 * 306.09275 * 29 28 4 53 53 H 1.08999 * 109.47147 * 299.99345 * 30 28 4 54 54 H 1.09000 * 109.47491 * 59.99904 * 30 28 4 55 55 H 1.09002 * 109.47011 * 179.97438 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4270 1.4615 0.1022 5 1 3.8106 0.6650 0.7398 6 6 3.7872 2.8189 0.7093 7 6 3.2788 2.8862 2.1264 8 8 2.6872 1.9414 2.6040 9 7 3.4826 3.9960 2.8634 10 6 4.1977 5.1757 2.3313 11 6 3.3743 6.4479 2.5206 12 6 2.8405 6.5660 3.9589 13 6 2.0333 5.3210 4.2433 14 1 1.3088 5.1825 3.4409 15 6 3.0070 4.1158 4.2357 16 1 3.8361 4.2734 4.9254 17 6 2.0700 3.0051 4.7187 18 6 1.2636 3.7487 5.8205 19 7 1.3476 5.1977 5.5153 20 6 0.8680 6.2228 6.2862 21 1 0.9861 7.2453 5.9591 22 6 0.2291 5.9477 7.4874 23 7 0.0847 4.7016 7.8858 24 14 -0.4257 7.3460 8.5386 25 1 -1.8270 7.6448 8.1479 26 1 -0.3844 6.9510 9.9695 27 1 0.4134 8.5540 8.3342 28 6 4.0495 1.3444 -1.2905 29 6 3.6057 2.5306 -2.1489 30 6 5.5747 1.3450 -1.1690 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 4.8701 2.9428 0.7055 37 1 3.3285 3.6135 0.1206 38 1 5.1481 5.2836 2.8537 39 1 4.3893 5.0285 1.2684 40 1 4.0000 7.3130 2.3008 41 1 2.5325 6.4337 1.8283 42 1 3.6732 6.6360 4.6588 43 1 2.2057 7.4476 4.0474 44 1 2.6345 2.1742 5.1418 45 1 1.4136 2.6615 3.9193 46 1 1.6996 3.5493 6.7993 47 1 0.2232 3.4241 5.8031 48 1 -0.3614 4.5093 8.7253 49 1 3.7226 0.4154 -1.7576 50 1 3.9597 2.3922 -3.1705 51 1 4.0239 3.4508 -1.7410 52 1 2.5176 2.5937 -2.1467 53 1 5.9016 2.2740 -0.7019 54 1 5.8909 0.4999 -0.5575 55 1 6.0182 1.2611 -2.1612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501392608.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:13 Heat of formation + Delta-G solvation = -79.107769 kcal Electronic energy + Delta-G solvation = -32186.642652 eV Core-core repulsion = 28223.394596 eV Total energy + Delta-G solvation = -3963.248056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73342 -40.09210 -38.73027 -36.89155 -36.20322 -34.30590 -33.79873 -32.27015 -31.35407 -30.20943 -29.59934 -27.95715 -26.51986 -26.14480 -24.89196 -23.71066 -22.82145 -22.46547 -21.48556 -20.48698 -19.88117 -18.64187 -17.79762 -17.58904 -17.20402 -16.72150 -16.42876 -16.24848 -16.08680 -15.69974 -15.36988 -15.12298 -14.85165 -14.70661 -14.61255 -14.38085 -14.09579 -13.95090 -13.69621 -13.51868 -13.38025 -13.15007 -13.01885 -12.99343 -12.87941 -12.73363 -12.65986 -12.42805 -12.21768 -12.09412 -12.06087 -11.95033 -11.81236 -11.75696 -11.70615 -11.66302 -11.56587 -11.39802 -11.31035 -10.77183 -10.29419 -10.20031 -9.47030 -8.91913 -7.84703 -5.22104 1.44389 1.47321 1.55850 1.79138 2.05410 2.50028 2.82702 3.33622 3.35929 3.58707 3.77255 3.91507 3.99459 4.01783 4.10405 4.12485 4.17557 4.24985 4.27812 4.31876 4.36432 4.39717 4.46571 4.51007 4.56204 4.57896 4.61669 4.70485 4.71040 4.84931 4.88688 4.92146 4.93330 4.95589 5.05015 5.06514 5.11433 5.12509 5.15098 5.17472 5.24945 5.29178 5.29688 5.45873 5.47822 5.50694 5.53081 5.58633 5.63818 5.74275 6.17235 6.42138 6.64040 7.04304 7.36510 7.74718 8.45248 9.27119 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.003126 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.067482 B = 8955.766131 C = 9932.440481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 O -0.393 6.393 4 C 0.108 3.892 5 H 0.049 0.951 6 C -0.129 4.129 7 C 0.508 3.492 8 O -0.569 6.569 9 N -0.606 5.606 10 C 0.104 3.896 11 C -0.121 4.121 12 C -0.111 4.111 13 C 0.153 3.847 14 H -0.006 1.006 15 C 0.135 3.865 16 H 0.077 0.923 17 C -0.108 4.108 18 C 0.183 3.817 19 N -0.613 5.613 20 C -0.234 4.234 21 H 0.089 0.911 22 C -0.071 4.071 23 N -0.956 5.956 24 Si 0.981 3.019 25 H -0.289 1.289 26 H -0.295 1.295 27 H -0.262 1.262 28 C -0.112 4.112 29 C -0.143 4.143 30 C -0.147 4.147 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.025 0.975 47 H -0.005 1.005 48 H 0.246 0.754 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.068 0.932 52 H 0.044 0.956 53 H 0.071 0.929 54 H 0.052 0.948 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.295 -3.564 -23.219 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.312 6.312 4 C 0.050 3.950 5 H 0.067 0.933 6 C -0.168 4.168 7 C 0.298 3.702 8 O -0.448 6.448 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.159 4.159 12 C -0.150 4.150 13 C 0.045 3.955 14 H 0.011 0.989 15 C 0.029 3.971 16 H 0.095 0.905 17 C -0.146 4.146 18 C 0.057 3.943 19 N -0.338 5.338 20 C -0.362 4.362 21 H 0.107 0.893 22 C -0.264 4.264 23 N -0.605 5.605 24 Si 0.809 3.191 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.187 1.187 28 C -0.131 4.131 29 C -0.200 4.200 30 C -0.204 4.204 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.156 0.844 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.013 0.987 48 H 0.055 0.945 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.087 0.913 52 H 0.064 0.936 53 H 0.090 0.910 54 H 0.071 0.929 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.765 -3.872 -22.818 26.928 hybrid contribution -1.092 0.008 1.490 1.847 sum 12.673 -3.864 -21.328 25.108 Atomic orbital electron populations 1.21718 0.93940 1.02875 1.01927 1.22426 0.95553 0.83703 0.99656 1.87883 1.21869 1.26982 1.94485 1.21917 0.81232 0.96226 0.95624 0.93256 1.21999 1.04413 0.99764 0.90590 1.21273 0.78855 0.81311 0.88792 1.90677 1.42520 1.38104 1.73452 1.48167 1.57112 1.16239 1.12385 1.22066 0.94934 0.83051 1.01596 1.21889 1.00642 0.98845 0.94554 1.21404 0.98895 0.96601 0.98059 1.20840 0.91824 0.95794 0.87065 0.98904 1.21796 0.95337 0.96394 0.83576 0.90492 1.22576 0.97877 0.96261 0.97922 1.21426 0.95349 0.82747 0.94748 1.44359 1.66123 1.02300 1.20973 1.19433 1.29576 0.87542 0.99686 0.89299 1.25728 1.02027 0.98919 0.99678 1.70193 1.48825 1.18598 1.22866 0.85045 0.78114 0.78620 0.77367 1.21619 1.22210 1.18670 1.21579 0.96815 1.00120 0.94604 1.21797 1.01046 0.97688 0.99478 1.21886 0.93157 1.02627 1.02779 0.89450 0.94411 0.91629 0.91979 0.94836 0.84412 0.86688 0.89490 0.86310 0.86967 0.92176 0.91695 0.92747 0.92105 0.91370 0.95681 0.98715 0.94501 0.91256 0.91834 0.91268 0.93642 0.91037 0.92905 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 10.28 71.98 0.74 -2.63 16 2 C 0.06 1.50 6.48 71.98 0.47 1.97 16 3 O -0.39 -10.58 8.67 -135.21 -1.17 -11.75 16 4 C 0.11 2.27 1.42 30.59 0.04 2.31 16 5 H 0.05 1.19 7.60 -2.39 -0.02 1.17 16 6 C -0.13 -2.45 3.04 29.85 0.09 -2.36 16 7 C 0.51 15.31 7.57 87.66 0.66 15.97 16 8 O -0.57 -22.34 12.22 10.74 0.13 -22.21 16 9 N -0.61 -17.80 2.92 -792.78 -2.32 -20.11 16 10 C 0.10 1.95 6.32 86.03 0.54 2.49 16 11 C -0.12 -2.58 5.93 30.79 0.18 -2.39 16 12 C -0.11 -3.67 5.44 30.26 0.16 -3.50 16 13 C 0.15 6.60 2.58 45.30 0.12 6.72 16 14 H -0.01 -0.31 8.05 -2.39 -0.02 -0.33 16 15 C 0.13 5.25 3.27 45.85 0.15 5.40 16 16 H 0.08 3.01 8.13 -2.39 -0.02 2.99 16 17 C -0.11 -4.98 4.95 31.49 0.16 -4.82 16 18 C 0.18 10.16 5.46 86.88 0.47 10.63 16 19 N -0.61 -33.41 3.34 -671.79 -2.25 -35.65 16 20 C -0.23 -13.43 9.94 84.03 0.84 -12.60 16 21 H 0.09 4.79 7.33 -2.91 -0.02 4.77 16 22 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 23 N -0.96 -60.47 10.46 21.65 0.23 -60.24 16 24 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 27 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 28 C -0.11 -1.60 2.85 -10.79 -0.03 -1.63 16 29 C -0.14 -1.84 8.47 71.98 0.61 -1.23 16 30 C -0.15 -1.48 8.95 71.98 0.64 -0.83 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.16 7.53 -2.39 -0.02 1.14 16 35 H 0.03 0.89 7.98 -2.39 -0.02 0.87 16 36 H 0.14 1.62 6.21 -2.38 -0.01 1.60 16 37 H 0.12 1.91 6.41 -2.38 -0.02 1.89 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.12 1.29 6.18 -2.39 -0.01 1.28 16 40 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 43 H 0.05 1.91 7.73 -2.39 -0.02 1.89 16 44 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.07 3.37 6.24 -2.39 -0.01 3.36 16 46 H 0.02 1.52 7.18 -2.39 -0.02 1.50 16 47 H -0.01 -0.34 7.81 -2.39 -0.02 -0.36 16 48 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 49 H 0.07 1.03 7.50 -2.39 -0.02 1.01 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.70 6.83 -2.39 -0.02 0.69 16 52 H 0.04 0.77 7.66 -2.39 -0.02 0.75 16 53 H 0.07 0.55 6.46 -2.39 -0.02 0.53 16 54 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 55 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -78.68 407.62 3.81 -74.87 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.84 Total: 16.33 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.32 Total: 9.76 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.34 Total: -116.01 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.04 Total: -33.97 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -78.68 3.81 -74.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501392608.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.239 kcal (2) G-P(sol) polarization free energy of solvation -78.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds