Wall clock time and date at job start Tue Mar 31 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.46924 * 2 1 4 4 C 1.42899 * 113.99997 * 175.30706 * 3 2 1 5 5 H 1.08995 * 109.46907 * 337.66701 * 4 3 2 6 6 C 1.53003 * 109.47024 * 217.67105 * 4 3 2 7 7 C 1.50691 * 109.47388 * 64.99727 * 6 4 3 8 8 O 1.21288 * 119.99910 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00311 * 179.97438 * 7 6 4 10 10 C 1.43566 * 116.07938 * 1.40043 * 9 7 6 11 11 C 1.53054 * 109.53059 * 141.33690 * 10 9 7 12 12 C 1.52938 * 108.49195 * 52.79643 * 11 10 9 13 13 C 1.52927 * 109.79680 * 294.00953 * 12 11 10 14 14 H 1.09005 * 110.50549 * 293.88786 * 13 12 11 15 15 C 1.44193 * 117.76203 * 179.97438 * 9 7 6 16 16 H 1.09001 * 109.22315 * 332.60710 * 15 9 7 17 17 C 1.54063 * 111.76363 * 93.50763 * 15 9 7 18 18 C 1.54055 * 103.74349 * 152.59875 * 17 15 9 19 19 N 1.46882 * 107.76107 * 342.83024 * 18 17 15 20 20 C 1.36939 * 125.57863 * 177.08045 * 19 18 17 21 21 H 1.08002 * 120.00050 * 180.02562 * 20 19 18 22 22 C 1.38817 * 120.00309 * 0.02562 * 20 19 18 23 23 N 1.31612 * 119.99664 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00079 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47069 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46956 * 120.00537 * 24 22 20 27 27 H 1.48500 * 109.46837 * 240.00141 * 24 22 20 28 28 C 1.53003 * 109.47289 * 97.67102 * 4 3 2 29 29 C 1.53000 * 109.47015 * 182.59870 * 28 4 3 30 30 C 1.53008 * 109.46936 * 302.59550 * 28 4 3 31 31 H 1.08998 * 109.47103 * 60.00055 * 1 2 3 32 32 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47149 * 300.00124 * 1 2 3 34 34 H 1.08994 * 109.47149 * 239.99875 * 2 1 3 35 35 H 1.08995 * 109.46881 * 119.99458 * 2 1 3 36 36 H 1.09010 * 109.46776 * 304.99390 * 6 4 3 37 37 H 1.08998 * 109.46841 * 185.00280 * 6 4 3 38 38 H 1.08995 * 110.29809 * 20.80220 * 10 9 7 39 39 H 1.09004 * 108.62760 * 260.84399 * 10 9 7 40 40 H 1.08998 * 109.63414 * 293.09327 * 11 10 9 41 41 H 1.08999 * 109.80039 * 172.59394 * 11 10 9 42 42 H 1.09008 * 109.41566 * 173.90803 * 12 11 10 43 43 H 1.08998 * 109.42091 * 54.10879 * 12 11 10 44 44 H 1.08993 * 110.57415 * 34.03203 * 17 15 9 45 45 H 1.09006 * 110.57005 * 271.16224 * 17 15 9 46 46 H 1.09004 * 109.81324 * 102.41771 * 18 17 15 47 47 H 1.09000 * 109.81336 * 223.24880 * 18 17 15 48 48 H 0.96997 * 120.00049 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.47278 * 62.59694 * 28 4 3 50 50 H 1.09007 * 109.46957 * 59.99979 * 29 28 4 51 51 H 1.08998 * 109.46900 * 179.97438 * 29 28 4 52 52 H 1.08993 * 109.47203 * 299.99567 * 29 28 4 53 53 H 1.09001 * 109.46930 * 65.46153 * 30 28 4 54 54 H 1.08995 * 109.47044 * 185.45826 * 30 28 4 55 55 H 1.09003 * 109.46759 * 305.46647 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4268 1.4616 0.1068 5 1 3.8316 0.5542 0.5548 6 6 3.7769 2.6642 0.9855 7 6 3.2900 2.4187 2.3903 8 8 2.7186 1.3839 2.6619 9 7 3.4894 3.3489 3.3449 10 6 4.1463 4.5542 2.9243 11 6 3.5141 5.7551 3.6319 12 6 3.5171 5.4877 5.1377 13 6 2.5906 4.3136 5.4570 14 1 1.5546 4.5753 5.2418 15 6 3.0031 3.0641 4.6722 16 1 2.1522 2.3862 4.6049 17 6 4.0917 2.4234 5.5542 18 6 3.6932 2.8348 6.9843 19 7 2.7496 3.9557 6.8815 20 6 2.1211 4.5671 7.9334 21 1 1.4413 5.3869 7.7538 22 6 2.3579 4.1334 9.2307 23 7 3.1868 3.1348 9.4496 24 14 1.5000 4.9670 10.6655 25 1 0.6263 6.0542 10.1558 26 1 0.6764 3.9706 11.3963 27 1 2.5161 5.5392 11.5849 28 6 4.0291 1.6553 -1.2863 29 6 5.5542 1.7128 -1.1790 30 6 3.6248 0.4841 -2.1840 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.2978 3.5580 0.5858 37 1 4.8578 2.8048 0.9950 38 1 4.0538 4.6784 1.8454 39 1 5.2006 4.4880 3.1931 40 1 2.4892 5.8866 3.2853 41 1 4.0911 6.6550 3.4187 42 1 3.1701 6.3768 5.6643 43 1 4.5300 5.2483 5.4613 44 1 5.0739 2.8222 5.3006 45 1 4.0794 1.3384 5.4502 46 1 3.2163 1.9956 7.4908 47 1 4.5780 3.1465 7.5392 48 1 3.3525 2.8319 10.3560 49 1 3.6596 2.5865 -1.7156 50 1 5.9236 0.7814 -0.7497 51 1 5.9833 1.8504 -2.1715 52 1 5.8422 2.5471 -0.5395 53 1 2.5460 0.5007 -2.3392 54 1 4.1314 0.5713 -3.1451 55 1 3.9088 -0.4541 -1.7072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501392610.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:21 Heat of formation + Delta-G solvation = -84.201426 kcal Electronic energy + Delta-G solvation = -31878.787361 eV Core-core repulsion = 27915.318427 eV Total energy + Delta-G solvation = -3963.468933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91382 -40.11078 -38.89275 -36.94789 -35.96738 -34.33744 -33.86801 -32.58569 -31.43156 -30.53955 -29.78320 -27.85557 -26.59366 -25.89824 -24.86494 -23.60427 -23.27843 -22.12711 -21.35255 -20.85990 -19.42140 -18.76295 -18.33942 -17.95595 -17.07681 -16.82343 -16.66818 -16.32776 -16.04593 -15.68373 -15.17584 -15.07649 -14.94037 -14.72465 -14.48728 -14.36897 -14.04138 -13.94059 -13.76131 -13.56003 -13.34946 -13.13570 -12.98593 -12.91201 -12.88845 -12.84133 -12.67912 -12.57896 -12.33888 -12.28783 -12.12879 -12.01320 -11.93429 -11.79916 -11.60728 -11.58628 -11.53910 -11.38827 -11.19464 -10.73326 -10.63999 -10.21380 -9.53163 -8.93332 -7.86089 -5.22995 1.44050 1.45557 1.55743 1.70608 2.04753 2.48455 2.82544 3.31277 3.43438 3.61396 3.78402 3.84066 3.87925 4.01382 4.05386 4.09832 4.15848 4.20031 4.24645 4.30847 4.33633 4.41990 4.49806 4.53612 4.56124 4.59862 4.63146 4.67183 4.73084 4.80306 4.85755 4.90030 4.91122 4.96056 4.97113 5.04017 5.06121 5.09105 5.11149 5.20196 5.24567 5.30853 5.36032 5.40791 5.46329 5.50508 5.53999 5.61489 5.71031 5.77999 6.16913 6.41059 6.49199 7.06975 7.29052 7.73609 8.38327 9.24094 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.002784 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.191670 B =10056.433165 C =10668.587742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.391 6.391 4 C 0.107 3.893 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.497 3.503 8 O -0.578 6.578 9 N -0.588 5.588 10 C 0.099 3.901 11 C -0.122 4.122 12 C -0.120 4.120 13 C 0.155 3.845 14 H 0.042 0.958 15 C 0.159 3.841 16 H 0.058 0.942 17 C -0.132 4.132 18 C 0.192 3.808 19 N -0.616 5.616 20 C -0.235 4.235 21 H 0.083 0.917 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.980 3.020 25 H -0.264 1.264 26 H -0.294 1.294 27 H -0.290 1.290 28 C -0.108 4.108 29 C -0.149 4.149 30 C -0.149 4.149 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.009 0.991 47 H 0.010 0.990 48 H 0.246 0.754 49 H 0.086 0.914 50 H 0.050 0.950 51 H 0.070 0.930 52 H 0.071 0.929 53 H 0.053 0.947 54 H 0.069 0.931 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 0.356 -27.101 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.310 6.310 4 C 0.048 3.952 5 H 0.067 0.933 6 C -0.175 4.175 7 C 0.287 3.713 8 O -0.457 6.457 9 N -0.319 5.319 10 C -0.023 4.023 11 C -0.161 4.161 12 C -0.160 4.160 13 C 0.048 3.952 14 H 0.060 0.940 15 C 0.053 3.947 16 H 0.076 0.924 17 C -0.171 4.171 18 C 0.067 3.933 19 N -0.341 5.341 20 C -0.364 4.364 21 H 0.101 0.899 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.808 3.192 25 H -0.188 1.188 26 H -0.222 1.222 27 H -0.217 1.217 28 C -0.126 4.126 29 C -0.206 4.206 30 C -0.206 4.206 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.056 0.944 49 H 0.104 0.896 50 H 0.069 0.931 51 H 0.089 0.911 52 H 0.090 0.910 53 H 0.072 0.928 54 H 0.088 0.912 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.561 -0.009 -26.703 27.090 hybrid contribution -0.461 -0.314 1.933 2.012 sum 4.100 -0.323 -24.770 25.109 Atomic orbital electron populations 1.21721 0.93786 1.02806 1.02092 1.22588 0.95662 0.83744 0.99725 1.87811 1.21745 1.27019 1.94436 1.21974 0.81433 0.97007 0.94743 0.93266 1.22150 1.04823 1.01400 0.89102 1.21594 0.78382 0.83078 0.88258 1.90660 1.43313 1.28568 1.83165 1.46628 1.58525 1.18898 1.07812 1.21545 0.96700 0.82597 1.01453 1.21819 1.02180 0.98786 0.93289 1.21878 0.99375 0.97851 0.96906 1.21106 0.97050 0.93257 0.83786 0.94043 1.20507 0.95912 0.96263 0.82003 0.92410 1.22753 0.98968 0.99753 0.95639 1.20709 0.91654 0.89471 0.91478 1.44774 1.50859 1.37442 1.01024 1.19428 1.19625 1.11928 0.85387 0.89901 1.25672 1.00873 0.99514 0.99950 1.70206 1.40289 1.30167 1.19471 0.84990 0.77544 0.77610 0.79072 1.18842 1.22173 1.21744 1.21558 0.96674 1.00441 0.93956 1.21918 0.93312 1.02382 1.03034 1.21907 1.01462 0.97457 0.99797 0.91278 0.89806 0.94167 0.91561 0.95354 0.85831 0.84458 0.85788 0.90861 0.91510 0.87644 0.93188 0.93239 0.90648 0.92266 0.97260 0.97211 0.94441 0.89603 0.93119 0.91089 0.90974 0.92766 0.91174 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 10.28 71.98 0.74 -2.36 16 2 C 0.06 1.37 6.01 71.98 0.43 1.81 16 3 O -0.39 -9.75 8.87 -135.18 -1.20 -10.95 16 4 C 0.11 2.12 1.42 30.60 0.04 2.16 16 5 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 6 C -0.14 -2.41 3.53 29.85 0.11 -2.30 16 7 C 0.50 14.38 7.43 87.65 0.65 15.04 16 8 O -0.58 -22.14 14.70 10.74 0.16 -21.99 16 9 N -0.59 -17.01 2.76 -807.75 -2.23 -19.24 16 10 C 0.10 1.92 5.89 86.94 0.51 2.43 16 11 C -0.12 -2.69 6.10 30.59 0.19 -2.51 16 12 C -0.12 -4.07 5.36 30.55 0.16 -3.91 16 13 C 0.16 6.51 3.24 44.80 0.15 6.65 16 14 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 15 C 0.16 6.20 2.78 45.85 0.13 6.33 16 16 H 0.06 2.63 7.10 -2.39 -0.02 2.62 16 17 C -0.13 -5.47 6.49 31.31 0.20 -5.26 16 18 C 0.19 10.12 5.39 86.66 0.47 10.58 16 19 N -0.62 -32.57 2.98 -671.81 -2.00 -34.57 16 20 C -0.23 -13.40 10.28 84.03 0.86 -12.54 16 21 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 22 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 23 N -0.95 -58.92 10.29 21.65 0.22 -58.69 16 24 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C -0.11 -1.43 2.71 -10.79 -0.03 -1.45 16 29 C -0.15 -1.45 8.91 71.98 0.64 -0.81 16 30 C -0.15 -1.95 7.75 71.98 0.56 -1.40 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.23 5.55 -2.39 -0.01 1.21 16 35 H 0.03 0.79 8.00 -2.39 -0.02 0.77 16 36 H 0.12 1.70 7.18 -2.38 -0.02 1.68 16 37 H 0.14 1.56 6.12 -2.39 -0.01 1.54 16 38 H 0.12 1.41 5.60 -2.39 -0.01 1.40 16 39 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.05 1.79 8.06 -2.39 -0.02 1.77 16 44 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 46 H 0.01 0.55 7.25 -2.39 -0.02 0.53 16 47 H 0.01 0.56 7.59 -2.39 -0.02 0.54 16 48 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 49 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 51 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.07 0.53 6.39 -2.39 -0.02 0.51 16 53 H 0.05 0.80 6.57 -2.39 -0.02 0.78 16 54 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 55 H 0.05 0.67 7.91 -2.39 -0.02 0.65 16 Total: -1.00 -75.98 410.42 4.10 -71.88 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.84 Total: 15.76 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.28 Total: 8.99 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.01 Total: -112.50 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.04 Total: -32.94 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -75.98 4.10 -71.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501392610.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.320 kcal (2) G-P(sol) polarization free energy of solvation -75.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds