Wall clock time and date at job start Tue Mar 31 2020 21:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47427 * 2 1 4 4 C 1.42898 * 113.99675 * 175.57569 * 3 2 1 5 5 H 1.08994 * 109.47489 * 325.59414 * 4 3 2 6 6 C 1.53008 * 109.46620 * 205.59634 * 4 3 2 7 7 C 1.50693 * 109.46994 * 65.00085 * 6 4 3 8 8 O 1.21286 * 120.00463 * 359.97438 * 7 6 4 9 9 N 1.34783 * 120.00012 * 179.97438 * 7 6 4 10 10 C 1.47845 * 122.22612 * 0.02695 * 9 7 6 11 11 C 1.52717 * 111.06088 * 232.45839 * 10 9 7 12 12 C 1.53871 * 111.52386 * 311.46918 * 11 10 9 13 13 C 1.51084 * 107.33603 * 56.92756 * 12 11 10 14 14 H 1.08997 * 108.31013 * 51.24352 * 13 12 11 15 15 C 1.45723 * 122.22869 * 179.97438 * 9 7 6 16 16 H 1.08994 * 111.64300 * 240.86451 * 15 9 7 17 17 C 1.53428 * 116.37765 * 9.91664 * 15 9 7 18 18 C 1.55531 * 101.76141 * 152.52187 * 17 15 9 19 19 N 1.45027 * 119.18274 * 176.11146 * 13 12 11 20 20 C 1.36938 * 126.56368 * 331.19109 * 19 13 12 21 21 H 1.08003 * 119.99786 * 359.97438 * 20 19 13 22 22 C 1.38810 * 120.00378 * 180.02562 * 20 19 13 23 23 N 1.31624 * 119.99843 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00195 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46967 * 269.99520 * 24 22 20 26 26 H 1.48498 * 109.47344 * 29.99788 * 24 22 20 27 27 H 1.48498 * 109.47039 * 149.99597 * 24 22 20 28 28 C 1.52996 * 109.47392 * 85.60006 * 4 3 2 29 29 C 1.52998 * 109.47245 * 63.19449 * 28 4 3 30 30 C 1.53003 * 109.47206 * 183.19558 * 28 4 3 31 31 H 1.09000 * 109.47723 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46966 * 300.00174 * 1 2 3 33 33 H 1.09000 * 109.46841 * 59.99932 * 1 2 3 34 34 H 1.08998 * 109.46893 * 239.99473 * 2 1 3 35 35 H 1.09000 * 109.46841 * 120.00068 * 2 1 3 36 36 H 1.08999 * 109.47329 * 304.99581 * 6 4 3 37 37 H 1.09001 * 109.46620 * 184.99748 * 6 4 3 38 38 H 1.09001 * 109.16472 * 352.86709 * 10 9 7 39 39 H 1.09000 * 109.16342 * 112.05397 * 10 9 7 40 40 H 1.08999 * 109.06827 * 71.99983 * 11 10 9 41 41 H 1.09006 * 109.06865 * 191.01490 * 11 10 9 42 42 H 1.08997 * 109.88490 * 297.46928 * 12 11 10 43 43 H 1.08996 * 109.88220 * 176.38536 * 12 11 10 44 44 H 1.08999 * 110.98741 * 270.82181 * 17 15 9 45 45 H 1.08995 * 110.98924 * 34.59012 * 17 15 9 46 46 H 1.09002 * 110.08144 * 218.32292 * 18 17 15 47 47 H 1.08995 * 109.86944 * 97.06124 * 18 17 15 48 48 H 0.96998 * 120.00060 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.47051 * 303.19221 * 28 4 3 50 50 H 1.09003 * 109.47606 * 60.00350 * 29 28 4 51 51 H 1.09003 * 109.47510 * 180.02562 * 29 28 4 52 52 H 1.09003 * 109.47057 * 299.99725 * 29 28 4 53 53 H 1.08996 * 109.47000 * 53.95938 * 30 28 4 54 54 H 1.09004 * 109.47209 * 173.96361 * 30 28 4 55 55 H 1.08998 * 109.46811 * 293.95864 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4273 1.4612 0.1007 5 1 3.8123 0.6603 0.7318 6 6 3.7879 2.8143 0.7172 7 6 3.2818 2.8710 2.1355 8 8 2.6905 1.9227 2.6068 9 7 3.4863 3.9755 2.8804 10 6 4.1999 5.1593 2.3558 11 6 5.3358 5.5733 3.2888 12 6 4.8642 5.6543 4.7512 13 6 4.2948 4.3033 5.1160 14 1 5.0267 3.5404 4.8511 15 6 3.0177 4.0828 4.2561 16 1 2.3102 4.9030 4.3770 17 6 2.4863 2.7944 4.8977 18 6 2.7695 3.0508 6.4053 19 7 3.8488 4.0677 6.4758 20 6 4.3337 4.6654 7.6084 21 1 5.1289 5.3928 7.5371 22 6 3.8039 4.3357 8.8484 23 7 2.8352 3.4489 8.9354 24 14 4.4659 5.1505 10.3935 25 1 5.5887 4.3443 10.9360 26 1 4.9499 6.5154 10.0648 27 1 3.3851 5.2396 11.4079 28 6 4.0476 1.3546 -1.2938 29 6 3.5691 2.5246 -2.1557 30 6 5.5727 1.3967 -1.1781 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.3280 3.6130 0.1351 37 1 4.8707 2.9386 0.7126 38 1 4.6111 4.9233 1.3743 39 1 3.4971 5.9868 2.2587 40 1 6.1418 4.8433 3.2144 41 1 5.7107 6.5499 2.9819 42 1 4.0949 6.4200 4.8507 43 1 5.7078 5.8887 5.4003 44 1 1.4184 2.6779 4.7129 45 1 3.0390 1.9246 4.5424 46 1 3.0957 2.1289 6.8869 47 1 1.8702 3.4274 6.8924 48 1 2.4647 3.2187 9.8018 49 1 3.7441 0.4151 -1.7556 50 1 3.8727 3.4642 -1.6939 51 1 4.0107 2.4485 -3.1493 52 1 2.4826 2.4946 -2.2381 53 1 5.9053 0.6295 -0.4790 54 1 6.0165 1.2136 -2.1567 55 1 5.8827 2.3770 -0.8163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501392611.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:26 Heat of formation + Delta-G solvation = -79.360834 kcal Electronic energy + Delta-G solvation = -32082.086927 eV Core-core repulsion = 28118.827897 eV Total energy + Delta-G solvation = -3963.259030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70571 -40.07746 -38.71814 -36.88413 -36.20269 -34.29186 -33.79574 -32.26262 -31.34802 -30.21344 -29.59150 -27.95663 -26.52412 -26.13788 -24.90182 -23.70218 -22.81719 -22.46042 -21.47316 -20.49372 -19.88539 -18.64192 -17.76549 -17.60866 -17.15705 -16.78800 -16.41025 -16.35435 -15.97835 -15.70436 -15.34997 -15.15296 -14.85232 -14.73868 -14.57566 -14.34009 -14.14433 -13.93581 -13.68914 -13.53434 -13.36849 -13.15117 -13.00215 -12.98259 -12.87903 -12.73197 -12.67064 -12.42735 -12.19299 -12.09791 -12.06198 -11.95656 -11.81462 -11.74621 -11.70430 -11.67726 -11.56580 -11.38921 -11.31504 -10.77157 -10.29643 -10.20345 -9.47474 -8.91652 -7.84657 -5.21982 1.44657 1.47448 1.56020 1.79135 2.03740 2.50108 2.81591 3.33789 3.34915 3.58331 3.76423 3.90447 3.98558 4.01590 4.10713 4.12555 4.18298 4.24583 4.28380 4.32662 4.36617 4.39340 4.46646 4.51818 4.56170 4.58534 4.60506 4.70443 4.71361 4.84522 4.88934 4.91213 4.94185 4.96159 5.05372 5.07615 5.10627 5.12617 5.14818 5.17762 5.26118 5.28748 5.29720 5.45649 5.47892 5.49836 5.53102 5.58516 5.64165 5.74069 6.17268 6.40446 6.63399 7.04177 7.35809 7.74781 8.45487 9.27223 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.003028 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.811055 B = 9245.160505 C =10319.964465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 O -0.388 6.388 4 C 0.109 3.891 5 H 0.044 0.956 6 C -0.128 4.128 7 C 0.508 3.492 8 O -0.569 6.569 9 N -0.604 5.604 10 C 0.104 3.896 11 C -0.119 4.119 12 C -0.112 4.112 13 C 0.154 3.846 14 H -0.001 1.001 15 C 0.133 3.867 16 H 0.073 0.927 17 C -0.109 4.109 18 C 0.183 3.817 19 N -0.613 5.613 20 C -0.233 4.233 21 H 0.090 0.910 22 C -0.071 4.071 23 N -0.956 5.956 24 Si 0.980 3.020 25 H -0.288 1.288 26 H -0.263 1.263 27 H -0.296 1.296 28 C -0.112 4.112 29 C -0.141 4.141 30 C -0.149 4.149 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.070 0.930 46 H -0.003 1.003 47 H 0.024 0.976 48 H 0.246 0.754 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.063 0.937 52 H 0.047 0.953 53 H 0.048 0.952 54 H 0.069 0.931 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 0.896 -26.957 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.308 6.308 4 C 0.051 3.949 5 H 0.062 0.938 6 C -0.168 4.168 7 C 0.298 3.702 8 O -0.448 6.448 9 N -0.338 5.338 10 C -0.016 4.016 11 C -0.158 4.158 12 C -0.151 4.151 13 C 0.045 3.955 14 H 0.016 0.984 15 C 0.027 3.973 16 H 0.091 0.909 17 C -0.147 4.147 18 C 0.058 3.942 19 N -0.338 5.338 20 C -0.361 4.361 21 H 0.108 0.892 22 C -0.264 4.264 23 N -0.605 5.605 24 Si 0.809 3.191 25 H -0.215 1.215 26 H -0.187 1.187 27 H -0.223 1.223 28 C -0.131 4.131 29 C -0.198 4.198 30 C -0.206 4.206 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.015 0.985 47 H 0.042 0.958 48 H 0.055 0.945 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.066 0.934 53 H 0.068 0.932 54 H 0.088 0.912 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.017 0.554 -26.532 26.840 hybrid contribution -0.047 -0.463 1.902 1.958 sum 3.970 0.091 -24.629 24.947 Atomic orbital electron populations 1.21708 0.93506 1.02884 1.02159 1.22442 0.95873 0.83715 0.99479 1.87856 1.21564 1.26893 1.94485 1.21898 0.81390 0.96159 0.95499 0.93784 1.21995 1.04208 1.00000 0.90558 1.21275 0.78947 0.81201 0.88785 1.90677 1.43162 1.37396 1.73547 1.48125 1.56496 1.16968 1.12180 1.22060 0.94398 0.86777 0.98406 1.21888 0.97818 1.03742 0.92338 1.21425 1.00383 0.95785 0.97503 1.20944 0.93779 0.96456 0.84275 0.98403 1.21890 0.96456 0.97409 0.81508 0.90883 1.22639 1.00217 0.97515 0.94362 1.21449 0.90784 0.90428 0.91531 1.44378 1.41263 1.46466 1.01660 1.19433 1.14585 1.17761 0.84368 0.89236 1.25729 0.99366 1.00418 1.00874 1.70196 1.29990 1.37055 1.23284 0.85044 0.76732 0.78502 0.78871 1.21531 1.18704 1.22309 1.21573 0.96557 1.00353 0.94618 1.21786 1.01003 0.97614 0.99423 1.21892 0.93428 1.02691 1.02582 0.89639 0.93981 0.91417 0.92195 0.95165 0.86008 0.85004 0.86165 0.90046 0.91631 0.87052 0.92029 0.92614 0.92417 0.91183 0.98464 0.95816 0.94515 0.91261 0.91347 0.91755 0.93365 0.93240 0.91163 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 10.28 71.98 0.74 -2.27 16 2 C 0.06 1.41 6.48 71.98 0.47 1.88 16 3 O -0.39 -9.96 8.69 -135.18 -1.18 -11.14 16 4 C 0.11 2.30 1.43 30.60 0.04 2.34 16 5 H 0.04 1.12 7.59 -2.39 -0.02 1.10 16 6 C -0.13 -2.45 3.06 29.85 0.09 -2.36 16 7 C 0.51 15.33 7.57 87.65 0.66 15.99 16 8 O -0.57 -22.39 12.25 10.75 0.13 -22.26 16 9 N -0.60 -17.78 2.91 -791.09 -2.30 -20.08 16 10 C 0.10 1.95 6.32 86.03 0.54 2.50 16 11 C -0.12 -2.45 5.92 30.79 0.18 -2.27 16 12 C -0.11 -3.65 5.45 30.26 0.16 -3.49 16 13 C 0.15 6.51 2.58 45.52 0.12 6.63 16 14 H 0.00 -0.07 8.03 -2.39 -0.02 -0.09 16 15 C 0.13 5.20 3.33 46.15 0.15 5.35 16 16 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 17 C -0.11 -5.01 5.01 31.61 0.16 -4.85 16 18 C 0.18 10.14 5.48 86.87 0.48 10.61 16 19 N -0.61 -33.10 3.35 -670.10 -2.25 -35.35 16 20 C -0.23 -13.27 9.94 84.03 0.84 -12.44 16 21 H 0.09 4.77 7.31 -2.91 -0.02 4.75 16 22 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 23 N -0.96 -60.28 10.46 21.65 0.23 -60.05 16 24 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 C -0.11 -1.61 2.85 -10.79 -0.03 -1.65 16 29 C -0.14 -1.72 8.64 71.98 0.62 -1.10 16 30 C -0.15 -1.65 8.75 71.98 0.63 -1.02 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.05 8.14 -2.38 -0.02 1.04 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.10 7.58 -2.39 -0.02 1.08 16 35 H 0.03 0.80 7.99 -2.39 -0.02 0.78 16 36 H 0.12 1.84 6.54 -2.39 -0.02 1.82 16 37 H 0.13 1.74 6.02 -2.39 -0.01 1.72 16 38 H 0.12 1.27 6.18 -2.39 -0.01 1.26 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.52 8.14 -2.38 -0.02 1.51 16 42 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 43 H 0.06 1.91 7.70 -2.39 -0.02 1.89 16 44 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.07 3.38 6.21 -2.39 -0.01 3.37 16 46 H 0.00 -0.18 7.82 -2.39 -0.02 -0.20 16 47 H 0.02 1.43 7.17 -2.39 -0.02 1.42 16 48 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.07 1.04 7.56 -2.39 -0.02 1.02 16 50 H 0.07 0.67 6.49 -2.39 -0.02 0.66 16 51 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.05 0.74 7.77 -2.39 -0.02 0.72 16 53 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 54 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 55 H 0.07 0.63 6.71 -2.39 -0.02 0.61 16 Total: -1.00 -77.77 407.81 3.83 -73.94 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.84 Total: 16.04 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 6.33 Total: 10.13 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -4.32 Total: -115.48 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.04 Total: -33.39 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -77.77 3.83 -73.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501392611.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.421 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds