Wall clock time and date at job start Tue Mar 31 2020 22:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99567 * 2 1 4 4 C 1.53005 * 109.46811 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47057 * 175.20774 * 4 3 2 6 6 C 1.50694 * 110.01946 * 61.11759 * 5 4 3 7 7 O 1.21280 * 119.99906 * 247.16968 * 6 5 4 8 8 N 1.34776 * 120.00439 * 67.17657 * 6 5 4 9 9 C 1.47032 * 125.64457 * 354.06738 * 8 6 5 10 10 C 1.54327 * 107.26678 * 178.85285 * 9 8 6 11 11 C 1.55161 * 103.01902 * 338.14141 * 10 9 8 12 12 H 1.09002 * 111.03526 * 277.21362 * 11 10 9 13 13 C 1.53002 * 111.00596 * 153.38170 * 11 10 9 14 14 C 1.53003 * 109.47102 * 72.80155 * 13 11 10 15 15 N 1.46499 * 109.47225 * 180.02562 * 14 13 11 16 16 C 1.36941 * 120.00055 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99746 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00445 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99910 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47297 * 90.00069 * 20 18 16 22 22 H 1.48498 * 109.47506 * 210.00112 * 20 18 16 23 23 H 1.48507 * 109.47088 * 330.00354 * 20 18 16 24 24 C 1.47425 * 125.65514 * 174.37671 * 8 6 5 25 25 C 1.54270 * 110.03261 * 299.67134 * 5 4 3 26 26 C 1.54884 * 104.19867 * 217.10720 * 25 5 4 27 27 C 1.54892 * 102.74832 * 37.94669 * 26 25 5 28 28 C 1.53881 * 110.03017 * 182.50802 * 5 4 3 29 29 H 1.09001 * 109.47334 * 300.00405 * 1 2 3 30 30 H 1.09005 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46776 * 60.00397 * 1 2 3 32 32 H 1.09000 * 109.47371 * 299.99612 * 3 2 1 33 33 H 1.08997 * 109.47499 * 59.99794 * 3 2 1 34 34 H 1.08997 * 109.46754 * 295.20488 * 4 3 2 35 35 H 1.09001 * 109.47498 * 55.20095 * 4 3 2 36 36 H 1.09005 * 109.87757 * 298.39953 * 9 8 6 37 37 H 1.09001 * 109.88303 * 59.55777 * 9 8 6 38 38 H 1.08996 * 110.85333 * 219.67435 * 10 9 8 39 39 H 1.08997 * 110.66989 * 96.52249 * 10 9 8 40 40 H 1.08994 * 109.47601 * 192.80056 * 13 11 10 41 41 H 1.09001 * 109.47260 * 312.80690 * 13 11 10 42 42 H 1.09002 * 109.46942 * 300.00024 * 14 13 11 43 43 H 1.09002 * 109.47357 * 60.00014 * 14 13 11 44 44 H 0.97000 * 119.99626 * 359.97438 * 15 14 13 45 45 H 0.97000 * 120.00324 * 179.97438 * 19 18 16 46 46 H 1.08999 * 110.36258 * 322.92917 * 24 8 6 47 47 H 1.08998 * 110.36070 * 85.13839 * 24 8 6 48 48 H 1.08997 * 110.48342 * 335.79016 * 25 5 4 49 49 H 1.09003 * 110.48096 * 98.42628 * 25 5 4 50 50 H 1.08995 * 110.76161 * 279.62959 * 26 25 5 51 51 H 1.09004 * 110.75723 * 156.25532 * 26 25 5 52 52 H 1.09006 * 110.48688 * 203.38237 * 27 26 25 53 53 H 1.08996 * 110.60528 * 80.79032 * 27 26 25 54 54 H 1.09000 * 110.03281 * 238.56605 * 28 5 4 55 55 H 1.08999 * 110.03271 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1572 2.5774 -0.1212 6 6 3.7507 3.4274 1.0549 7 8 3.0258 4.3854 0.8889 8 7 4.1928 3.1231 2.2912 9 6 4.9704 1.9289 2.6533 10 6 5.2737 2.0204 4.1637 11 6 5.1283 3.5369 4.4582 12 1 6.0423 4.0740 4.2050 13 6 4.7413 3.7773 5.9188 14 6 5.9468 3.4978 6.8185 15 7 5.5761 3.7275 8.2171 16 6 6.5003 3.5398 9.2101 17 1 7.5022 3.2221 8.9622 18 6 6.1491 3.7579 10.5352 19 7 4.9281 4.1456 10.8372 20 14 7.4094 3.5013 11.8898 21 1 8.1397 4.7711 12.1336 22 1 6.7189 3.0805 13.1353 23 1 8.3719 2.4482 11.4774 24 6 3.9716 3.9292 3.5056 25 6 3.7076 3.2448 -1.4374 26 6 4.9582 4.0240 -1.9147 27 6 6.1192 3.0698 -1.5396 28 6 5.6906 2.4662 -0.1861 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 3.8634 0.7196 0.9289 35 1 3.8510 0.5715 -0.8448 36 1 4.3894 1.0307 2.4436 37 1 5.9034 1.9092 2.0902 38 1 6.2874 1.6816 4.3771 39 1 4.5474 1.4448 4.7376 40 1 4.4258 4.8129 6.0454 41 1 3.9222 3.1120 6.1919 42 1 6.2623 2.4622 6.6920 43 1 6.7660 4.1631 6.5455 44 1 4.6763 4.0132 8.4396 45 1 4.6826 4.2976 11.7633 46 1 4.0189 4.9922 3.2690 47 1 3.0088 3.6835 3.9537 48 1 3.4256 2.4896 -2.1710 49 1 2.8787 3.9286 -1.2545 50 1 5.0495 4.9711 -1.3830 51 1 4.9243 4.1863 -2.9920 52 1 7.0504 3.6261 -1.4314 53 1 6.2290 2.2862 -2.2892 54 1 6.1408 3.0277 0.6325 55 1 5.9917 1.4200 -0.1323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501654576.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:01 Heat of formation + Delta-G solvation = -108.602682 kcal Electronic energy + Delta-G solvation = -30651.842701 eV Core-core repulsion = 26687.315649 eV Total energy + Delta-G solvation = -3964.527051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00345 -39.60350 -38.76572 -37.99981 -36.85549 -34.65038 -33.55614 -32.52657 -30.64550 -29.99521 -29.10890 -28.44372 -26.84680 -25.83109 -24.49580 -23.73285 -23.16469 -21.99775 -21.53494 -21.23323 -19.68996 -19.11243 -17.78721 -17.62368 -17.31034 -16.89736 -16.82180 -16.68533 -16.08963 -15.88011 -15.71935 -15.44261 -15.23326 -15.19285 -14.80547 -14.57846 -14.29161 -14.05057 -13.94323 -13.72337 -13.34941 -13.18217 -13.10511 -12.87341 -12.76875 -12.70072 -12.47241 -12.35974 -12.26642 -12.19531 -12.05394 -11.92576 -11.87424 -11.73591 -11.71214 -11.61043 -11.50496 -11.41322 -11.40617 -10.91419 -10.76163 -10.63756 -9.68407 -8.99675 -7.95199 -5.24344 1.47655 1.49747 1.54060 1.58194 1.91660 2.56524 2.67448 3.27119 3.38763 3.44392 3.57550 3.61823 3.69763 3.80522 3.98353 4.03521 4.12802 4.17434 4.25345 4.31617 4.32329 4.40055 4.42770 4.46024 4.46627 4.51473 4.52016 4.57295 4.60777 4.65149 4.76759 4.78732 4.79504 4.82597 4.86068 4.92460 4.95799 4.99599 5.05313 5.07612 5.10776 5.18665 5.20030 5.23253 5.29183 5.38275 5.40831 5.45423 5.47081 5.50256 6.10672 6.27537 6.49029 7.07680 7.33152 8.10508 8.32221 9.28720 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.002130 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.344996 B =13140.506963 C =13992.508326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.060 3.940 4 C -0.104 4.104 5 C -0.067 4.067 6 C 0.533 3.467 7 O -0.584 6.584 8 N -0.615 5.615 9 C 0.091 3.909 10 C -0.125 4.125 11 C -0.082 4.082 12 H 0.091 0.909 13 C -0.102 4.102 14 C 0.155 3.845 15 N -0.751 5.751 16 C -0.244 4.244 17 H 0.078 0.922 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.110 3.890 25 C -0.111 4.111 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.037 0.963 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.093 0.907 49 H 0.059 0.941 50 H 0.045 0.955 51 H 0.082 0.918 52 H 0.071 0.929 53 H 0.088 0.912 54 H 0.065 0.935 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -8.976 -31.186 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.070 4.070 6 C 0.323 3.677 7 O -0.465 6.465 8 N -0.347 5.347 9 C -0.030 4.030 10 C -0.163 4.163 11 C -0.102 4.102 12 H 0.109 0.891 13 C -0.141 4.141 14 C 0.029 3.971 15 N -0.394 5.394 16 C -0.376 4.376 17 H 0.096 0.904 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.191 1.191 24 C -0.013 4.013 25 C -0.149 4.149 26 C -0.163 4.163 27 C -0.156 4.156 28 C -0.152 4.152 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.111 0.889 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.101 0.899 52 H 0.090 0.910 53 H 0.106 0.894 54 H 0.084 0.916 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.303 -8.693 -31.296 32.507 hybrid contribution -0.542 0.853 1.531 1.835 sum -1.845 -7.840 -29.765 30.835 Atomic orbital electron populations 1.22920 0.79797 1.03987 1.00418 1.87804 1.21162 1.28067 1.95508 1.22573 0.94934 0.84373 0.99743 1.21751 0.92219 0.94613 1.05583 1.21362 0.98492 0.94403 0.92758 1.20780 0.78643 0.84768 0.83468 1.90657 1.38622 1.32058 1.85117 1.48545 1.54480 1.24806 1.06910 1.22584 0.96802 0.87254 0.96360 1.22765 1.04102 0.95126 0.94265 1.22150 0.97861 0.97477 0.92688 0.89095 1.21499 0.97916 1.01439 0.93224 1.20791 0.95582 0.97741 0.83012 1.42658 1.12454 1.82218 1.02041 1.19668 0.93742 1.36757 0.87455 0.90410 1.25621 0.98641 1.03145 0.99761 1.69823 1.19711 1.54975 1.17813 0.85113 0.78117 0.77874 0.78511 1.21451 1.22230 1.19117 1.22207 0.98611 0.95671 0.84761 1.22450 0.98741 0.99517 0.94182 1.22492 0.94573 0.97852 1.01432 1.22376 0.97850 0.98919 0.96456 1.22400 0.90371 1.03535 0.98923 0.94431 0.87853 0.93115 0.92540 0.95792 0.89554 0.87589 0.89688 0.88456 0.88202 0.90648 0.92589 0.91975 0.95209 0.96365 0.79642 0.94023 0.91883 0.92091 0.88898 0.92229 0.93594 0.89894 0.91035 0.89376 0.91643 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -7.80 10.70 -148.98 -1.59 -9.40 16 3 C 0.06 1.11 5.48 71.98 0.39 1.51 16 4 C -0.10 -1.47 4.14 30.59 0.13 -1.34 16 5 C -0.07 -1.07 0.37 -52.20 -0.02 -1.09 16 6 C 0.53 12.76 5.35 87.66 0.47 13.23 16 7 O -0.58 -18.91 15.68 -3.03 -0.05 -18.95 16 8 N -0.61 -13.38 3.16 -811.78 -2.56 -15.94 16 9 C 0.09 1.42 5.48 86.73 0.48 1.89 16 10 C -0.12 -2.29 5.90 31.79 0.19 -2.11 16 11 C -0.08 -1.89 3.01 -9.40 -0.03 -1.92 16 12 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 13 C -0.10 -3.12 4.84 30.60 0.15 -2.98 16 14 C 0.15 5.92 6.16 86.38 0.53 6.46 16 15 N -0.75 -38.44 5.60 -343.45 -1.92 -40.36 16 16 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 17 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 18 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 19 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 20 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.11 2.72 6.35 86.85 0.55 3.28 16 25 C -0.11 -1.78 4.59 31.67 0.15 -1.63 16 26 C -0.13 -1.78 6.91 31.88 0.22 -1.56 16 27 C -0.12 -1.22 6.83 31.67 0.22 -1.01 16 28 C -0.11 -1.33 4.41 31.32 0.14 -1.19 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.99 6.96 -2.39 -0.02 0.98 16 33 H 0.02 0.55 7.45 -2.39 -0.02 0.53 16 34 H 0.09 1.15 5.00 -2.39 -0.01 1.14 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.16 5.83 -2.38 -0.01 1.14 16 37 H 0.10 1.11 5.69 -2.39 -0.01 1.10 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.49 7.91 -2.39 -0.02 1.48 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.94 7.97 -2.39 -0.02 1.92 16 42 H 0.03 1.10 7.75 -2.39 -0.02 1.08 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 44 H 0.37 20.38 7.67 -92.71 -0.71 19.67 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.06 1.72 8.09 -2.39 -0.02 1.70 16 47 H 0.06 1.59 8.04 -2.39 -0.02 1.57 16 48 H 0.09 1.11 7.66 -2.39 -0.02 1.10 16 49 H 0.06 1.29 6.75 -2.39 -0.02 1.28 16 50 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 53 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.06 0.90 6.21 -2.39 -0.01 0.89 16 55 H 0.10 0.72 7.65 -2.39 -0.02 0.70 16 Total: -1.00 -72.81 415.87 2.44 -70.37 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.15 Total: 29.96 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 6.11 Total: -3.88 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -4.20 Total: -116.29 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.64 Total: -28.35 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.81 2.44 -70.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501654576.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.230 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds