Wall clock time and date at job start Tue Mar 31 2020 22:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99704 * 2 1 4 4 C 1.53006 * 109.46802 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46652 * 175.12425 * 4 3 2 6 6 C 1.50700 * 110.43764 * 305.66921 * 5 4 3 7 7 O 1.21278 * 120.00034 * 119.61515 * 6 5 4 8 8 N 1.34781 * 119.99980 * 299.62702 * 6 5 4 9 9 C 1.47019 * 125.64751 * 355.10853 * 8 6 5 10 10 C 1.54324 * 107.27202 * 181.02970 * 9 8 6 11 11 C 1.55154 * 102.94036 * 22.19105 * 10 9 8 12 12 H 1.08999 * 111.00708 * 82.57764 * 11 10 9 13 13 C 1.53005 * 111.00241 * 206.42679 * 11 10 9 14 14 C 1.52996 * 109.47285 * 287.19646 * 13 11 10 15 15 N 1.46499 * 109.47433 * 180.02562 * 14 13 11 16 16 C 1.36934 * 120.00016 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00270 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99991 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46808 * 60.00524 * 20 18 16 22 22 H 1.48497 * 109.46920 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47145 * 300.00604 * 20 18 16 24 24 C 1.47422 * 125.64924 * 175.07287 * 8 6 5 25 25 C 1.54883 * 110.60136 * 68.29133 * 5 4 3 26 26 C 1.54892 * 102.74798 * 156.67341 * 25 5 4 27 27 C 1.54265 * 104.19956 * 322.05723 * 26 25 5 28 28 C 1.53879 * 106.59230 * 23.60880 * 27 26 25 29 29 H 1.09001 * 109.47163 * 299.99871 * 1 2 3 30 30 H 1.08995 * 109.47226 * 60.00093 * 1 2 3 31 31 H 1.09001 * 109.46776 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47138 * 60.00047 * 3 2 1 33 33 H 1.08997 * 109.47063 * 299.99873 * 3 2 1 34 34 H 1.09001 * 109.47238 * 55.12407 * 4 3 2 35 35 H 1.09001 * 109.47136 * 295.11954 * 4 3 2 36 36 H 1.09004 * 109.88279 * 300.44223 * 9 8 6 37 37 H 1.08999 * 109.88660 * 61.45280 * 9 8 6 38 38 H 1.09005 * 110.72099 * 263.83020 * 10 9 8 39 39 H 1.08994 * 110.72514 * 140.55366 * 10 9 8 40 40 H 1.08998 * 109.47358 * 47.20156 * 13 11 10 41 41 H 1.09007 * 109.47030 * 167.19556 * 13 11 10 42 42 H 1.09004 * 109.47292 * 300.00058 * 14 13 11 43 43 H 1.08998 * 109.47383 * 59.99959 * 14 13 11 44 44 H 0.96999 * 120.00089 * 359.97438 * 15 14 13 45 45 H 0.96990 * 119.99976 * 179.97438 * 19 18 16 46 46 H 1.09000 * 110.36686 * 37.06051 * 24 8 6 47 47 H 1.09000 * 110.45755 * 274.78958 * 24 8 6 48 48 H 1.08998 * 110.75675 * 274.98601 * 25 5 4 49 49 H 1.09001 * 110.76016 * 38.36243 * 25 5 4 50 50 H 1.08997 * 110.48653 * 203.37759 * 26 25 5 51 51 H 1.08999 * 110.59941 * 80.79092 * 26 25 5 52 52 H 1.08995 * 110.03187 * 264.32787 * 27 26 25 53 53 H 1.08994 * 110.07623 * 142.91616 * 27 26 25 54 54 H 1.09000 * 110.03080 * 240.71317 * 28 27 26 55 55 H 1.09000 * 110.06941 * 119.31248 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1572 2.5773 -0.1233 6 6 3.6105 3.2931 -1.3315 7 8 3.0118 4.3392 -1.1971 8 7 3.7868 2.7706 -2.5613 9 6 4.5748 1.5704 -2.8775 10 6 4.5126 1.3712 -4.4066 11 6 4.1623 2.7899 -4.9279 12 1 5.0556 3.4098 -5.0040 13 6 3.4327 2.7161 -6.2708 14 6 4.4231 2.3218 -7.3683 15 7 3.7247 2.2517 -8.6542 16 6 4.4125 1.9154 -9.7894 17 1 5.4698 1.7014 -9.7369 18 6 3.7506 1.8484 -11.0078 19 7 2.4619 2.1087 -11.0718 20 14 4.6890 1.3903 -12.5567 21 1 5.2807 0.0379 -12.3951 22 1 3.7608 1.3898 -13.7158 23 1 5.7716 2.3796 -12.7903 24 6 3.2206 3.3076 -3.8121 25 6 3.8983 3.4046 1.1602 26 6 5.0399 4.4509 1.1285 27 6 6.2557 3.6682 0.5910 28 6 5.6944 2.4769 -0.2050 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8510 0.5704 -0.8440 35 1 3.8636 0.7209 0.9296 36 1 5.6090 1.7128 -2.5641 37 1 4.1500 0.7039 -2.3708 38 1 3.7308 0.6592 -4.6713 39 1 5.4786 1.0461 -4.7928 40 1 2.6392 1.9711 -6.2127 41 1 3.0008 3.6894 -6.5036 42 1 5.2166 3.0669 -7.4264 43 1 4.8550 1.3485 -7.1355 44 1 2.7750 2.4435 -8.7014 45 1 1.9995 2.0622 -11.9232 46 1 3.2203 4.3974 -3.7913 47 1 2.2090 2.9315 -3.9647 48 1 2.9251 3.8934 1.1150 49 1 3.9752 2.7759 2.0473 50 1 5.2413 4.8264 2.1318 51 1 4.7885 5.2727 0.4580 52 1 6.8651 3.3093 1.4203 53 1 6.8522 4.3056 -0.0618 54 1 6.0315 1.5398 0.2381 55 1 6.0178 2.5357 -1.2442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501654577.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:05 Heat of formation + Delta-G solvation = -105.835281 kcal Electronic energy + Delta-G solvation = -30813.777951 eV Core-core repulsion = 26849.370903 eV Total energy + Delta-G solvation = -3964.407048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00231 -39.56687 -38.77734 -37.91612 -36.85523 -34.67763 -33.60742 -32.49683 -30.65563 -29.93020 -29.09601 -28.48102 -26.82572 -25.87961 -24.56620 -23.68616 -23.17664 -22.12639 -21.40825 -21.18574 -19.75011 -19.11680 -17.72078 -17.63014 -17.36399 -16.89023 -16.77959 -16.68026 -15.97274 -15.91938 -15.74364 -15.47432 -15.26884 -15.17709 -14.82067 -14.59599 -14.41315 -13.92727 -13.89732 -13.75725 -13.42988 -13.16079 -13.09943 -12.88995 -12.73514 -12.67594 -12.47656 -12.33065 -12.26124 -12.21523 -12.12658 -12.00174 -11.90511 -11.79731 -11.66693 -11.58837 -11.51408 -11.35075 -11.27226 -10.90366 -10.73485 -10.65185 -9.65368 -8.99797 -7.95072 -5.24269 1.47502 1.51000 1.56368 1.57126 1.92753 2.56650 2.67243 3.28824 3.38636 3.43150 3.56797 3.62480 3.69109 3.78834 3.98649 4.01998 4.10932 4.17746 4.24272 4.28567 4.33357 4.38965 4.43835 4.45924 4.47042 4.49252 4.51963 4.58716 4.60539 4.67118 4.76250 4.77503 4.79358 4.82258 4.85355 4.89657 4.97266 5.01004 5.06318 5.06831 5.12661 5.14861 5.22561 5.25090 5.30844 5.37909 5.39502 5.45180 5.49779 5.49823 6.10817 6.27519 6.50462 7.10194 7.33152 8.10444 8.32368 9.28655 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.002223 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.972777 B =12593.831671 C =13555.891121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.061 3.939 4 C -0.105 4.105 5 C -0.071 4.071 6 C 0.537 3.463 7 O -0.583 6.583 8 N -0.615 5.615 9 C 0.090 3.910 10 C -0.124 4.124 11 C -0.083 4.083 12 H 0.088 0.912 13 C -0.102 4.102 14 C 0.155 3.845 15 N -0.751 5.751 16 C -0.246 4.246 17 H 0.077 0.923 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.976 3.024 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.278 1.278 24 C 0.110 3.890 25 C -0.102 4.102 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.116 4.116 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.024 0.976 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.017 0.983 43 H 0.030 0.970 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.100 0.900 50 H 0.080 0.920 51 H 0.040 0.960 52 H 0.088 0.912 53 H 0.057 0.943 54 H 0.105 0.895 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -3.330 31.325 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.074 4.074 6 C 0.327 3.673 7 O -0.463 6.463 8 N -0.348 5.348 9 C -0.031 4.031 10 C -0.162 4.162 11 C -0.103 4.103 12 H 0.107 0.893 13 C -0.140 4.140 14 C 0.029 3.971 15 N -0.393 5.393 16 C -0.378 4.378 17 H 0.095 0.905 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.201 1.201 22 H -0.222 1.222 23 H -0.204 1.204 24 C -0.013 4.013 25 C -0.140 4.140 26 C -0.164 4.164 27 C -0.160 4.160 28 C -0.154 4.154 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.118 0.882 50 H 0.099 0.901 51 H 0.059 0.941 52 H 0.106 0.894 53 H 0.076 0.924 54 H 0.124 0.876 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.389 -2.970 31.388 31.985 hybrid contribution -0.815 0.604 -1.510 1.819 sum 4.574 -2.367 29.878 30.319 Atomic orbital electron populations 1.22905 0.79867 1.03946 1.00351 1.87808 1.21069 1.28053 1.95491 1.22570 0.95022 0.84415 0.99589 1.21718 0.92086 0.94580 1.05790 1.21576 0.97975 0.95244 0.92591 1.20667 0.78570 0.84284 0.83768 1.90664 1.44644 1.24926 1.86086 1.48545 1.51142 1.29152 1.05931 1.22646 0.96859 0.87205 0.96431 1.22765 1.04042 0.96090 0.93317 1.22149 0.98166 0.97820 0.92129 0.89321 1.21494 0.98073 1.01347 0.93117 1.20784 0.94167 0.97771 0.84390 1.42642 1.09156 1.83734 1.03804 1.19633 0.93533 1.37446 0.87205 0.90467 1.25624 0.96817 1.03577 1.01069 1.69817 1.09395 1.57670 1.25416 0.85181 0.77249 0.78422 0.78745 1.20090 1.22224 1.20363 1.22196 0.97119 0.98844 0.83122 1.22491 0.98978 0.96957 0.95534 1.22341 0.95063 0.97648 1.01356 1.22151 0.97442 0.96317 1.00118 1.22448 0.90099 1.00966 1.01843 0.93068 0.94575 0.87936 0.92670 0.95811 0.89195 0.87565 0.88679 0.89309 0.90532 0.88308 0.91898 0.92620 0.96476 0.95216 0.79627 0.93999 0.91966 0.91913 0.92572 0.88166 0.90105 0.94083 0.89355 0.92447 0.87615 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.93 10.70 -148.98 -1.59 -9.53 16 3 C 0.06 1.12 5.52 71.98 0.40 1.51 16 4 C -0.10 -1.44 4.33 30.60 0.13 -1.31 16 5 C -0.07 -1.12 0.28 -51.86 -0.01 -1.13 16 6 C 0.54 12.77 4.82 87.66 0.42 13.19 16 7 O -0.58 -18.75 15.41 -3.02 -0.05 -18.80 16 8 N -0.62 -13.43 3.29 -811.80 -2.67 -16.10 16 9 C 0.09 1.42 5.53 86.73 0.48 1.90 16 10 C -0.12 -2.32 5.90 31.78 0.19 -2.14 16 11 C -0.08 -1.95 3.01 -9.40 -0.03 -1.98 16 12 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.10 -3.13 4.83 30.59 0.15 -2.99 16 14 C 0.15 5.98 6.16 86.38 0.53 6.51 16 15 N -0.75 -38.57 5.60 -343.46 -1.92 -40.49 16 16 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 20 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.11 2.74 6.40 86.85 0.56 3.29 16 25 C -0.10 -1.59 4.84 31.88 0.15 -1.43 16 26 C -0.13 -1.98 6.52 31.67 0.21 -1.77 16 27 C -0.12 -1.48 6.80 31.32 0.21 -1.27 16 28 C -0.12 -1.33 5.37 31.32 0.17 -1.16 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 0.96 7.71 -2.39 -0.02 0.94 16 33 H 0.02 0.55 6.92 -2.39 -0.02 0.53 16 34 H 0.09 1.17 4.94 -2.39 -0.01 1.16 16 35 H 0.11 1.05 8.07 -2.39 -0.02 1.03 16 36 H 0.10 1.14 5.64 -2.39 -0.01 1.13 16 37 H 0.09 1.21 5.45 -2.39 -0.01 1.20 16 38 H 0.08 1.53 7.91 -2.38 -0.02 1.51 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.97 7.97 -2.39 -0.02 1.95 16 41 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.03 1.10 7.75 -2.39 -0.02 1.08 16 44 H 0.37 20.43 7.67 -92.71 -0.71 19.72 16 45 H 0.25 15.10 8.31 -92.72 -0.77 14.33 16 46 H 0.06 1.73 7.99 -2.39 -0.02 1.71 16 47 H 0.06 1.62 8.03 -2.39 -0.02 1.61 16 48 H 0.06 1.14 7.38 -2.39 -0.02 1.13 16 49 H 0.10 1.05 8.00 -2.39 -0.02 1.03 16 50 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.04 0.89 7.73 -2.39 -0.02 0.87 16 52 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.11 0.69 7.84 -2.39 -0.02 0.67 16 55 H 0.07 0.90 4.99 -2.39 -0.01 0.89 16 Total: -1.00 -72.86 415.33 2.34 -70.53 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.15 Total: 30.43 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 6.11 Total: -4.26 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -4.31 Total: -116.60 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.64 Total: -28.32 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -72.86 2.34 -70.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501654577.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.308 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds