Wall clock time and date at job start Tue Mar 31 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50700 * 110.01963 * 59.29709 * 4 3 2 6 6 O 1.21284 * 119.99882 * 120.70226 * 5 4 3 7 7 N 1.34780 * 120.00125 * 300.70296 * 5 4 3 8 8 C 1.46496 * 120.00095 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.46706 * 35.00102 * 8 7 5 10 10 C 1.53001 * 109.47013 * 154.99851 * 8 7 5 11 11 C 1.53000 * 109.46872 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47273 * 300.00043 * 11 10 8 13 13 H 1.09000 * 109.47232 * 300.00495 * 12 11 10 14 14 C 1.52996 * 109.47382 * 180.02562 * 12 11 10 15 15 N 1.46495 * 109.47550 * 175.00138 * 14 12 11 16 16 C 1.36936 * 120.00477 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99542 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99936 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99946 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99556 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47485 * 90.00101 * 20 18 16 22 22 H 1.48500 * 109.46711 * 210.00195 * 20 18 16 23 23 H 1.48500 * 109.47396 * 329.99814 * 20 18 16 24 24 C 1.52998 * 109.46853 * 60.00097 * 12 11 10 25 25 C 1.52991 * 109.47298 * 275.00475 * 8 7 5 26 26 C 1.54272 * 110.03320 * 297.90599 * 4 3 2 27 27 C 1.54955 * 104.16182 * 217.13826 * 26 4 3 28 28 C 1.54890 * 102.77920 * 37.88826 * 27 26 4 29 29 C 1.53876 * 110.03342 * 180.69027 * 4 3 2 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 33 33 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 34 34 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 35 35 H 0.96995 * 119.99535 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.47002 * 300.00422 * 10 8 7 37 37 H 1.09000 * 109.46753 * 60.00425 * 10 8 7 38 38 H 1.09000 * 109.47395 * 60.00438 * 11 10 8 39 39 H 1.08998 * 109.46991 * 180.02562 * 11 10 8 40 40 H 1.09003 * 109.46648 * 295.00092 * 14 12 11 41 41 H 1.08999 * 109.47174 * 54.99530 * 14 12 11 42 42 H 0.97004 * 119.99945 * 359.97438 * 15 14 12 43 43 H 0.97000 * 119.99485 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.47074 * 60.00682 * 24 12 11 45 45 H 1.09004 * 109.46649 * 180.02562 * 24 12 11 46 46 H 1.09005 * 109.46938 * 299.99485 * 25 8 7 47 47 H 1.09001 * 109.47776 * 59.99875 * 25 8 7 48 48 H 1.09006 * 110.48354 * 335.78930 * 26 4 3 49 49 H 1.08999 * 110.48545 * 98.42469 * 26 4 3 50 50 H 1.09001 * 110.72199 * 279.57302 * 27 26 4 51 51 H 1.09001 * 110.92474 * 156.29815 * 27 26 4 52 52 H 1.09000 * 110.49212 * 203.40612 * 28 27 26 53 53 H 1.08997 * 110.60138 * 80.81393 * 28 27 26 54 54 H 1.08997 * 110.03119 * 238.57024 * 29 4 3 55 55 H 1.09000 * 110.02988 * 359.95225 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9922 0.4233 -1.2184 6 8 4.7469 0.9448 -2.0118 7 7 3.5619 -0.8370 -1.4259 8 6 4.0054 -1.5768 -2.6100 9 1 5.0344 -1.3041 -2.8445 10 6 3.9268 -3.0792 -2.3318 11 6 4.3906 -3.8518 -3.5682 12 6 3.4886 -3.5049 -4.7544 13 1 2.4596 -3.7776 -4.5204 14 6 3.9520 -4.2780 -5.9907 15 7 3.0189 -4.0388 -7.0945 16 6 3.2311 -4.6306 -8.3110 17 1 4.0862 -5.2741 -8.4566 18 6 2.3465 -4.4044 -9.3566 19 7 1.3042 -3.6206 -9.1789 20 14 2.6356 -5.2123 -11.0158 21 1 1.9516 -6.5299 -11.0509 22 1 2.0922 -4.3436 -12.0907 23 1 4.0931 -5.4055 -11.2251 24 6 3.5673 -2.0025 -5.0326 25 6 3.1031 -1.2297 -3.7958 26 6 4.0093 0.4664 1.2799 27 6 5.3259 1.1915 1.6562 28 6 5.0153 2.6684 1.3079 29 6 4.1752 2.5839 0.0168 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 2.9581 -1.2539 -0.7916 36 1 4.5697 -3.3264 -1.4869 37 1 2.8978 -3.3519 -2.0973 38 1 5.4196 -3.5791 -3.8023 39 1 4.3341 -4.9222 -3.3702 40 1 4.9481 -3.9410 -6.2776 41 1 3.9804 -5.3436 -5.7634 42 1 2.2506 -3.4612 -6.9636 43 1 0.6859 -3.4629 -9.9095 44 1 4.5963 -1.7298 -5.2668 45 1 2.9244 -1.7553 -5.8774 46 1 2.0741 -1.5025 -3.5614 47 1 3.1592 -0.1594 -3.9941 48 1 3.2718 0.5779 2.0748 49 1 4.1977 -0.5881 1.0783 50 1 6.1563 0.8195 1.0559 51 1 5.5404 1.0822 2.7193 52 1 5.9379 3.2200 1.1272 53 1 4.4413 3.1382 2.1064 54 1 4.8165 2.7122 -0.8552 55 1 3.3990 3.3492 0.0248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501696466.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:23 Heat of formation + Delta-G solvation = -127.131743 kcal Electronic energy + Delta-G solvation = -30959.860092 eV Core-core repulsion = 26994.529561 eV Total energy + Delta-G solvation = -3965.330532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72789 -39.97041 -38.71767 -37.75329 -36.65269 -35.09401 -33.15655 -31.88976 -31.71038 -30.41322 -29.53904 -27.59003 -26.79232 -25.35961 -24.65497 -23.80145 -22.97828 -21.86586 -21.47446 -21.02988 -20.01731 -19.15153 -18.19958 -17.34820 -17.18190 -16.76134 -16.67550 -16.53341 -16.16726 -15.70404 -15.58638 -15.40746 -15.29041 -15.09841 -14.75010 -14.59181 -14.23284 -14.14777 -13.77355 -13.55072 -13.27671 -13.22186 -13.10833 -12.85997 -12.77948 -12.58647 -12.36175 -12.17027 -12.08304 -12.04575 -12.02666 -11.99920 -11.90632 -11.90099 -11.71343 -11.49487 -11.42388 -11.24254 -11.15144 -10.90896 -10.75514 -10.49638 -9.93837 -8.98844 -7.95591 -5.23898 1.45518 1.47876 1.56323 1.64926 2.22374 2.55537 2.71310 3.37592 3.51545 3.56739 3.70938 3.74358 3.78569 3.95333 4.03544 4.10645 4.17103 4.25356 4.28605 4.42027 4.44533 4.48724 4.52117 4.53178 4.56601 4.57874 4.58242 4.60297 4.62529 4.76256 4.82306 4.84329 4.93622 4.95182 4.96806 5.05566 5.06403 5.10283 5.11401 5.18432 5.20734 5.23241 5.26910 5.29469 5.31363 5.45961 5.48052 5.52163 5.59145 5.65801 6.14311 6.27211 6.69129 7.32976 7.36185 8.10673 8.33931 9.28299 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.002205 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.017506 B =12697.794624 C =13008.339479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.078 3.922 4 C -0.078 4.078 5 C 0.520 3.480 6 O -0.588 6.588 7 N -0.701 5.701 8 C 0.150 3.850 9 H 0.065 0.935 10 C -0.110 4.110 11 C -0.101 4.101 12 C -0.082 4.082 13 H 0.066 0.934 14 C 0.154 3.846 15 N -0.745 5.745 16 C -0.245 4.245 17 H 0.074 0.926 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.975 3.025 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.270 1.270 24 C -0.100 4.100 25 C -0.112 4.112 26 C -0.099 4.099 27 C -0.128 4.128 28 C -0.117 4.117 29 C -0.116 4.116 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.416 0.584 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.014 0.986 41 H 0.023 0.977 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.040 0.960 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.048 0.952 51 H 0.089 0.911 52 H 0.065 0.935 53 H 0.088 0.912 54 H 0.063 0.937 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 10.191 31.077 32.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.002 3.998 4 C -0.081 4.081 5 C 0.307 3.693 6 O -0.468 6.468 7 N -0.353 5.353 8 C 0.045 3.955 9 H 0.083 0.917 10 C -0.148 4.148 11 C -0.139 4.139 12 C -0.101 4.101 13 H 0.084 0.916 14 C 0.028 3.972 15 N -0.388 5.388 16 C -0.377 4.377 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.195 1.195 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.136 4.136 27 C -0.165 4.165 28 C -0.154 4.154 29 C -0.154 4.154 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.256 0.744 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.032 0.968 41 H 0.041 0.959 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.067 0.933 51 H 0.108 0.892 52 H 0.084 0.916 53 H 0.106 0.894 54 H 0.081 0.919 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.762 10.258 30.413 32.215 hybrid contribution -0.783 0.070 -1.559 1.746 sum 1.980 10.328 28.854 30.711 Atomic orbital electron populations 1.22882 0.79241 1.03884 1.00632 1.87666 1.21364 1.27721 1.95542 1.22606 0.90129 0.85346 1.01748 1.21550 0.95360 0.97118 0.94087 1.20896 0.79339 0.82029 0.87045 1.90655 1.38283 1.69116 1.48775 1.46082 1.49260 1.14214 1.25775 1.20876 0.97654 0.92378 0.84602 0.91712 1.21698 1.03287 0.91457 0.98380 1.21425 0.98829 1.00846 0.92800 1.21227 1.00109 0.94155 0.94605 0.91565 1.20876 0.92192 0.96773 0.87387 1.42615 1.29620 1.57625 1.08903 1.19668 1.07032 1.21492 0.89519 0.90763 1.25596 0.97711 1.01678 1.02072 1.69825 1.16394 1.43141 1.32833 0.85114 0.77784 0.77418 0.79301 1.21145 1.22179 1.19529 1.21369 1.00532 0.95096 0.96810 1.21761 0.99861 0.98669 0.94798 1.22408 0.97908 0.98870 0.94444 1.22556 0.96718 0.95271 1.01997 1.22338 0.99743 0.96856 0.96485 1.22194 0.99897 0.93374 0.99971 0.88523 0.94560 0.92220 0.93967 0.89310 0.74425 0.89377 0.90213 0.91725 0.89853 0.96813 0.95867 0.79420 0.94026 0.93087 0.94103 0.91455 0.94124 0.88313 0.91367 0.93337 0.89224 0.91585 0.89368 0.91856 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -5.71 7.91 -148.98 -1.18 -6.89 16 3 C 0.08 1.08 4.43 71.98 0.32 1.40 16 4 C -0.08 -1.31 0.66 -52.20 -0.03 -1.35 16 5 C 0.52 13.02 6.40 87.66 0.56 13.58 16 6 O -0.59 -20.04 14.87 -3.04 -0.05 -20.08 16 7 N -0.70 -15.48 4.42 -442.54 -1.95 -17.43 16 8 C 0.15 3.79 2.45 44.99 0.11 3.90 16 9 H 0.06 1.94 7.58 -2.38 -0.02 1.92 16 10 C -0.11 -2.23 5.39 30.59 0.16 -2.07 16 11 C -0.10 -2.46 5.20 30.59 0.16 -2.30 16 12 C -0.08 -2.71 2.22 -10.80 -0.02 -2.74 16 13 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 14 C 0.15 6.43 5.65 86.38 0.49 6.92 16 15 N -0.74 -39.66 5.33 -343.46 -1.83 -41.49 16 16 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 17 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 19 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 20 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 C -0.10 -3.51 5.08 30.61 0.16 -3.35 16 25 C -0.11 -3.38 5.50 30.61 0.17 -3.21 16 26 C -0.10 -1.24 5.61 31.69 0.18 -1.06 16 27 C -0.13 -1.60 6.91 31.91 0.22 -1.38 16 28 C -0.12 -1.42 6.83 31.67 0.22 -1.20 16 29 C -0.12 -1.94 6.06 31.32 0.19 -1.75 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.76 8.13 -2.39 -0.02 0.74 16 35 H 0.42 7.50 6.38 -92.71 -0.59 6.91 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.37 21.10 6.85 -92.71 -0.64 20.47 16 43 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.04 1.70 7.18 -2.39 -0.02 1.68 16 46 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.10 0.86 7.85 -2.38 -0.02 0.84 16 49 H 0.07 0.93 7.45 -2.39 -0.02 0.91 16 50 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.06 1.50 6.39 -2.39 -0.02 1.49 16 55 H 0.08 1.10 7.67 -2.39 -0.02 1.08 16 Total: -1.00 -73.63 419.51 2.35 -71.28 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.37 Total: 36.78 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.43 Total: -10.68 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -3.50 Total: -119.95 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.22 Total: -26.97 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -73.63 2.35 -71.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501696466.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.856 kcal (2) G-P(sol) polarization free energy of solvation -73.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds