Wall clock time and date at job start Tue Mar 31 2020 21:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99973 * 2 1 4 4 C 1.50695 * 119.99844 * 179.97438 * 2 1 3 5 5 H 1.08999 * 109.47429 * 355.00182 * 4 2 1 6 6 C 1.53001 * 109.46883 * 115.00232 * 4 2 1 7 7 C 1.50701 * 109.46991 * 185.00045 * 6 4 2 8 8 O 1.21284 * 120.00279 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99772 * 179.97438 * 7 6 4 10 10 C 1.46503 * 119.99780 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47425 * 35.00038 * 10 9 7 12 12 C 1.52995 * 109.47025 * 155.00029 * 10 9 7 13 13 C 1.53003 * 109.46906 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47534 * 300.00084 * 13 12 10 15 15 H 1.09001 * 109.46938 * 300.00296 * 14 13 12 16 16 C 1.53003 * 109.47534 * 179.97438 * 14 13 12 17 17 N 1.46499 * 109.47124 * 174.99970 * 16 14 13 18 18 C 1.36937 * 119.99714 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99888 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99968 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00234 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00061 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46994 * 90.00175 * 22 20 18 24 24 H 1.48507 * 109.47142 * 210.00240 * 22 20 18 25 25 H 1.48498 * 109.47015 * 329.99972 * 22 20 18 26 26 C 1.53001 * 109.46975 * 59.99721 * 14 13 12 27 27 C 1.52991 * 109.47297 * 300.00174 * 26 14 13 28 28 O 1.42899 * 109.47326 * 235.00027 * 4 2 1 29 29 C 1.42905 * 113.99778 * 89.99930 * 28 4 2 30 30 C 1.52999 * 109.46728 * 179.97438 * 29 28 4 31 31 H 1.07995 * 120.00014 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99632 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.47034 * 269.99634 * 3 2 1 34 34 H 1.09003 * 109.47398 * 29.99805 * 3 2 1 35 35 H 1.08998 * 109.47208 * 150.00213 * 3 2 1 36 36 H 1.09000 * 109.47345 * 304.99611 * 6 4 2 37 37 H 1.09001 * 109.47321 * 65.00060 * 6 4 2 38 38 H 0.96997 * 120.00391 * 359.97438 * 9 7 6 39 39 H 1.08991 * 109.47090 * 299.99815 * 12 10 9 40 40 H 1.09002 * 109.47097 * 60.00536 * 12 10 9 41 41 H 1.09001 * 109.47250 * 60.00189 * 13 12 10 42 42 H 1.09000 * 109.47026 * 180.02562 * 13 12 10 43 43 H 1.09001 * 109.46838 * 295.00295 * 16 14 13 44 44 H 1.09000 * 109.46839 * 54.99465 * 16 14 13 45 45 H 0.96995 * 119.99834 * 0.02562 * 17 16 14 46 46 H 0.96993 * 119.99996 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.46818 * 60.00502 * 26 14 13 48 48 H 1.09002 * 109.47072 * 179.97438 * 26 14 13 49 49 H 1.09001 * 109.47454 * 299.99938 * 27 26 14 50 50 H 1.09000 * 109.47106 * 179.97438 * 27 26 14 51 51 H 1.09000 * 109.47187 * 300.00233 * 29 28 4 52 52 H 1.09001 * 109.46558 * 60.00281 * 29 28 4 53 53 H 1.09000 * 109.47486 * 300.00062 * 30 29 28 54 54 H 1.09001 * 109.47362 * 60.00784 * 30 29 28 55 55 H 1.09002 * 109.46716 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3586 -2.1316 0.0905 6 6 2.8465 -1.4425 -1.3067 7 6 3.5009 -2.7989 -1.3601 8 8 3.3550 -3.5792 -0.4431 9 7 4.2474 -3.1454 -2.4274 10 6 4.8831 -4.4643 -2.4796 11 1 4.2343 -5.1995 -2.0036 12 6 5.1177 -4.8600 -3.9387 13 6 5.7822 -6.2371 -3.9932 14 6 7.1223 -6.1863 -3.2568 15 1 7.7708 -5.4509 -3.7329 16 6 7.7865 -7.5636 -3.3107 17 7 9.1208 -7.4861 -2.7108 18 6 9.9083 -8.6045 -2.6460 19 1 9.5459 -9.5436 -3.0375 20 6 11.1723 -8.5313 -2.0772 21 7 11.9295 -9.6061 -2.0153 22 14 11.7994 -6.9069 -1.4007 23 1 11.4204 -6.7872 0.0300 24 1 13.2782 -6.8559 -1.5271 25 1 11.1983 -5.7863 -2.1675 26 6 6.8877 -5.7905 -1.7976 27 6 6.2233 -4.4135 -1.7431 28 8 2.9709 -1.3308 1.1042 29 6 2.4138 -1.8756 2.3021 30 6 3.4682 -1.8542 3.4105 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5399 0.9354 -0.0004 33 1 2.2453 1.6197 -1.0277 34 1 1.4745 2.0648 0.5138 35 1 3.0160 1.1748 0.5138 36 1 2.1658 -1.3340 -2.1511 37 1 3.6117 -0.6677 -1.3551 38 1 4.3632 -2.5219 -3.1613 39 1 4.1631 -4.8958 -4.4634 40 1 5.7667 -4.1248 -4.4147 41 1 5.1337 -6.9726 -3.5170 42 1 5.9497 -6.5188 -5.0327 43 1 7.1804 -8.2811 -2.7574 44 1 7.8728 -7.8850 -4.3486 45 1 9.4461 -6.6428 -2.3589 46 1 12.8126 -9.5550 -1.6175 47 1 6.2392 -6.5260 -1.3215 48 1 7.8424 -5.7548 -1.2728 49 1 6.8718 -3.6780 -2.2193 50 1 6.0558 -4.1317 -0.7036 51 1 1.5537 -1.2794 2.6067 52 1 2.0980 -2.9031 2.1213 53 1 4.3281 -2.4507 3.1057 54 1 3.7844 -0.8268 3.5915 55 1 3.0434 -2.2701 4.3241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501696922.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:16 Heat of formation + Delta-G solvation = -104.388747 kcal Electronic energy + Delta-G solvation = -30006.386533 eV Core-core repulsion = 26042.042212 eV Total energy + Delta-G solvation = -3964.344321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.20364 -39.91868 -38.97462 -36.81247 -36.09456 -35.09977 -33.44758 -32.65837 -31.75357 -31.43144 -30.30638 -28.22072 -26.96409 -25.09612 -24.16900 -23.69177 -23.45249 -22.02100 -21.38749 -20.74819 -19.79035 -19.64198 -17.94616 -17.86832 -17.33302 -16.66728 -16.58490 -16.26817 -16.01160 -15.70206 -15.52568 -15.24977 -15.03685 -14.84239 -14.69933 -14.63959 -14.36373 -13.99988 -13.94428 -13.77351 -13.47923 -13.32404 -13.15482 -13.13146 -12.97843 -12.88022 -12.73802 -12.59545 -12.49654 -12.16575 -12.07264 -12.04356 -11.98315 -11.87279 -11.79793 -11.49314 -11.29611 -11.17385 -10.96613 -10.75383 -10.47557 -10.08482 -9.97277 -9.29337 -8.04435 -5.37095 1.19555 1.34586 1.38607 1.45573 1.73358 2.23410 2.46241 2.79111 3.26722 3.57712 3.63980 3.72213 3.87836 3.91242 3.92278 3.95061 4.13534 4.15014 4.22262 4.32630 4.36187 4.43090 4.46202 4.47312 4.52569 4.55096 4.57236 4.58510 4.71733 4.81171 4.82767 4.86108 4.92452 4.93872 4.99463 5.04607 5.05207 5.09604 5.13256 5.18664 5.19863 5.21558 5.23557 5.29410 5.47070 5.55433 5.61932 5.64299 5.74523 5.81860 6.20275 6.33173 6.65590 7.06840 7.37192 7.84115 8.03284 9.17277 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.002163 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.306376 B =12938.889328 C =13965.608324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.156 4.156 3 C -0.114 4.114 4 C 0.138 3.862 5 H 0.057 0.943 6 C -0.129 4.129 7 C 0.509 3.491 8 O -0.578 6.578 9 N -0.715 5.715 10 C 0.151 3.849 11 H 0.064 0.936 12 C -0.111 4.111 13 C -0.103 4.103 14 C -0.086 4.086 15 H 0.076 0.924 16 C 0.156 3.844 17 N -0.758 5.758 18 C -0.234 4.234 19 H 0.055 0.945 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.954 3.046 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.250 1.250 26 C -0.106 4.106 27 C -0.117 4.117 28 O -0.386 6.386 29 C 0.064 3.936 30 C -0.147 4.147 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.416 0.584 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.017 0.983 44 H 0.027 0.973 45 H 0.365 0.635 46 H 0.258 0.742 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.042 0.958 51 H 0.055 0.945 52 H 0.035 0.965 53 H 0.044 0.956 54 H 0.065 0.935 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.421 27.236 -0.387 38.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.170 4.170 4 C 0.080 3.920 5 H 0.075 0.925 6 C -0.169 4.169 7 C 0.297 3.703 8 O -0.457 6.457 9 N -0.367 5.367 10 C 0.047 3.953 11 H 0.082 0.918 12 C -0.148 4.148 13 C -0.142 4.142 14 C -0.105 4.105 15 H 0.094 0.906 16 C 0.030 3.970 17 N -0.403 5.403 18 C -0.365 4.365 19 H 0.073 0.927 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.781 3.219 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.175 1.175 26 C -0.145 4.145 27 C -0.156 4.156 28 O -0.306 6.306 29 C -0.013 4.013 30 C -0.204 4.204 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.253 0.747 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.061 0.939 51 H 0.073 0.927 52 H 0.054 0.946 53 H 0.063 0.937 54 H 0.084 0.916 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -27.305 26.534 0.200 38.074 hybrid contribution 0.845 0.085 0.571 1.023 sum -26.461 26.619 0.771 37.541 Atomic orbital electron populations 1.23947 0.94833 1.02911 0.99800 1.22233 0.95722 0.96168 1.01495 1.20766 1.00085 0.93329 1.02834 1.20818 0.90695 0.94182 0.86348 0.92494 1.21849 1.02041 0.94207 0.98789 1.21094 0.78275 0.89523 0.81414 1.90706 1.62748 1.54215 1.38003 1.45975 1.51016 1.17760 1.21994 1.20839 0.92618 0.84663 0.97229 0.91821 1.21708 1.02180 0.97252 0.93695 1.21430 0.94329 0.97396 1.01007 1.21305 0.97543 0.95849 0.95821 0.90608 1.20880 0.84297 0.96272 0.95590 1.42756 1.15867 1.08153 1.73563 1.19070 0.96299 0.89706 1.31475 0.92675 1.25525 0.97203 1.00727 1.02301 1.69887 1.11275 1.29924 1.52368 0.85421 0.77209 0.80604 0.78672 1.20720 1.21900 1.17482 1.21442 0.99709 0.96687 0.96641 1.21806 0.96833 0.97009 0.99950 1.87873 1.39420 1.83331 1.19956 1.22432 0.96790 0.96787 0.85271 1.21717 0.98728 1.02677 0.97258 0.88383 0.86564 0.90033 0.91370 0.92392 0.84647 0.86510 0.74681 0.89301 0.89647 0.91960 0.89939 0.96450 0.95482 0.80120 0.93333 0.92937 0.93650 0.90809 0.93883 0.92661 0.94648 0.93695 0.91585 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 13.91 67.77 0.94 -0.85 16 2 C -0.16 -1.91 5.05 -16.50 -0.08 -1.99 16 3 C -0.11 -1.14 9.73 71.24 0.69 -0.45 16 4 C 0.14 2.30 1.86 29.85 0.06 2.36 16 5 H 0.06 1.10 7.25 -2.39 -0.02 1.08 16 6 C -0.13 -1.65 5.25 29.85 0.16 -1.49 16 7 C 0.51 10.26 7.67 87.66 0.67 10.93 16 8 O -0.58 -17.40 15.08 10.73 0.16 -17.24 16 9 N -0.72 -11.13 5.08 -442.52 -2.25 -13.38 16 10 C 0.15 3.06 2.46 44.99 0.11 3.17 16 11 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 12 C -0.11 -1.70 5.39 30.59 0.16 -1.54 16 13 C -0.10 -2.15 5.20 30.59 0.16 -1.99 16 14 C -0.09 -2.46 2.23 -10.79 -0.02 -2.49 16 15 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 16 C 0.16 6.03 5.65 86.38 0.49 6.52 16 17 N -0.76 -36.69 5.13 -343.45 -1.76 -38.45 16 18 C -0.23 -13.89 10.47 84.03 0.88 -13.01 16 19 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 21 N -0.98 -64.69 13.97 21.65 0.30 -64.39 16 22 Si 0.95 46.92 27.73 68.60 1.90 48.82 16 23 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 26 C -0.11 -3.20 5.08 30.59 0.16 -3.05 16 27 C -0.12 -2.93 5.49 30.59 0.17 -2.76 16 28 O -0.39 -8.50 8.76 -135.21 -1.18 -9.68 16 29 C 0.06 1.28 6.46 71.98 0.46 1.74 16 30 C -0.15 -2.67 10.28 71.98 0.74 -1.93 16 31 H 0.10 0.97 7.84 -2.91 -0.02 0.94 16 32 H 0.12 0.83 8.04 -2.91 -0.02 0.81 16 33 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.07 0.58 8.06 -2.39 -0.02 0.56 16 35 H 0.06 0.76 7.72 -2.39 -0.02 0.74 16 36 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 1.19 8.04 -2.39 -0.02 1.17 16 38 H 0.42 3.38 8.60 -92.71 -0.80 2.58 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.37 16.89 4.71 -92.71 -0.44 16.46 16 46 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.04 1.56 7.18 -2.39 -0.02 1.54 16 49 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 53 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 55 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.66 433.92 2.93 -75.73 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.45 Total: 28.98 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 6.21 Total: -10.40 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.71 Total: -116.22 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.02 Total: -26.92 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.82 kcal Total: -78.66 2.93 -75.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501696922.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.659 kcal (2) G-P(sol) polarization free energy of solvation -78.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds