Wall clock time and date at job start Tue Mar 31 2020 22:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99704 * 2 1 4 4 O 1.21281 * 119.99349 * 180.02562 * 3 2 1 5 5 C 1.50690 * 120.00111 * 0.02562 * 3 2 1 6 6 O 1.42905 * 109.47333 * 179.97438 * 5 3 2 7 7 C 1.42901 * 113.99831 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.47092 * 90.00453 * 7 6 5 9 9 C 1.53001 * 109.47160 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46742 * 299.99483 * 9 8 7 11 11 C 1.53001 * 109.47181 * 60.00303 * 10 9 8 12 12 C 1.53002 * 109.46583 * 209.99796 * 7 6 5 13 13 C 1.46500 * 120.00160 * 180.02562 * 2 1 3 14 14 C 1.53000 * 109.47157 * 125.81696 * 13 2 1 15 15 C 1.53000 * 109.47321 * 300.00075 * 14 13 2 16 16 C 1.52998 * 109.46893 * 299.99938 * 15 14 13 17 17 N 1.46503 * 109.47050 * 179.97438 * 16 15 14 18 18 C 1.36947 * 119.99935 * 84.99925 * 17 16 15 19 19 H 1.08004 * 119.99724 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99832 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99662 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00268 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46858 * 90.00237 * 22 20 18 24 24 H 1.48493 * 109.47241 * 210.00217 * 22 20 18 25 25 H 1.48497 * 109.46974 * 330.00636 * 22 20 18 26 26 C 1.53000 * 109.47256 * 60.00272 * 16 15 14 27 27 C 1.53000 * 109.46947 * 299.99695 * 26 16 15 28 28 H 1.08998 * 109.47387 * 84.07965 * 1 2 3 29 29 H 1.09004 * 109.46771 * 204.07267 * 1 2 3 30 30 H 1.08994 * 109.47011 * 324.06909 * 1 2 3 31 31 H 1.09003 * 109.47373 * 59.99890 * 5 3 2 32 32 H 1.09000 * 109.47209 * 300.00021 * 5 3 2 33 33 H 1.08997 * 109.47437 * 330.00008 * 7 6 5 34 34 H 1.09003 * 109.47143 * 299.99649 * 8 7 6 35 35 H 1.09007 * 109.47416 * 59.99353 * 8 7 6 36 36 H 1.08996 * 109.47047 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.47210 * 59.99653 * 9 8 7 38 38 H 1.08997 * 109.47407 * 300.00050 * 10 9 8 39 39 H 1.08995 * 109.46969 * 179.97438 * 10 9 8 40 40 H 1.08994 * 109.47067 * 179.97438 * 11 10 9 41 41 H 1.08997 * 109.47157 * 59.99593 * 11 10 9 42 42 H 1.08997 * 109.47407 * 300.00231 * 12 7 6 43 43 H 1.09001 * 109.47278 * 60.00625 * 12 7 6 44 44 H 1.09001 * 109.47145 * 245.81949 * 13 2 1 45 45 H 1.08997 * 109.46737 * 59.99993 * 14 13 2 46 46 H 1.09005 * 109.47058 * 180.02562 * 14 13 2 47 47 H 1.08996 * 109.47274 * 180.02562 * 15 14 13 48 48 H 1.08996 * 109.47312 * 59.99964 * 15 14 13 49 49 H 1.09005 * 109.47330 * 299.99891 * 16 15 14 50 50 H 0.96991 * 120.00281 * 265.00357 * 17 16 15 51 51 H 0.96995 * 120.00003 * 179.97438 * 21 20 18 52 52 H 1.08997 * 109.46907 * 179.97438 * 26 16 15 53 53 H 1.08996 * 109.47161 * 59.99844 * 26 16 15 54 54 H 1.09005 * 109.47043 * 300.00015 * 27 26 16 55 55 H 1.08992 * 109.47252 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4722 0.0006 6 8 2.3139 3.5585 0.0011 7 6 1.6993 4.8485 0.0011 8 6 1.4795 5.3088 1.4435 9 6 0.8219 6.6903 1.4435 10 6 1.7312 7.6878 0.7229 11 6 1.9510 7.2276 -0.7196 12 6 2.6080 5.8463 -0.7197 13 6 2.1976 -1.2687 -0.0006 14 6 3.1836 -1.2878 -1.1703 15 6 2.4169 -1.1410 -2.4862 16 6 1.4292 -2.3001 -2.6329 17 7 0.6946 -2.1593 -3.8926 18 6 1.2316 -2.6422 -5.0561 19 1 2.1969 -3.1266 -5.0450 20 6 0.5358 -2.5083 -6.2497 21 7 1.0518 -2.9729 -7.3679 22 14 -1.1334 -1.6700 -6.2688 23 1 -0.9533 -0.2139 -6.4983 24 1 -1.9631 -2.2439 -7.3584 25 1 -1.8105 -1.8855 -4.9649 26 6 0.4430 -2.2811 -1.4632 27 6 1.2097 -2.4279 -0.1473 28 1 -0.3634 0.1060 -1.0221 29 1 -0.3633 -0.9383 0.4192 30 1 -0.3633 0.8321 0.6030 31 1 0.7590 2.5298 0.8908 32 1 0.7584 2.5302 -0.8891 33 1 0.7397 4.7939 -0.5131 34 1 0.8321 4.5979 1.9571 35 1 2.4391 5.3634 1.9577 36 1 0.6658 7.0183 2.4712 37 1 -0.1375 6.6360 0.9293 38 1 2.6907 7.7420 1.2372 39 1 1.2626 8.6718 0.7225 40 1 2.5983 7.9384 -1.2330 41 1 0.9915 7.1733 -1.2339 42 1 3.5676 5.9010 -0.2056 43 1 2.7646 5.5185 -1.7474 44 1 2.7438 -1.3733 0.9369 45 1 3.8873 -0.4620 -1.0657 46 1 3.7283 -2.2319 -1.1710 47 1 3.1193 -1.1550 -3.3195 48 1 1.8719 -0.1971 -2.4858 49 1 1.9742 -3.2441 -2.6333 50 1 -0.1721 -1.7239 -3.9025 51 1 0.5654 -2.8797 -8.2019 52 1 -0.2609 -3.1066 -1.5680 53 1 -0.1020 -1.3371 -1.4628 54 1 1.7548 -3.3719 -0.1478 55 1 0.5073 -2.4147 0.6859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505782406.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:32 Heat of formation + Delta-G solvation = -94.525992 kcal Electronic energy + Delta-G solvation = -31163.326998 eV Core-core repulsion = 27199.410357 eV Total energy + Delta-G solvation = -3963.916640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71288 -40.20237 -39.09689 -37.24719 -36.66549 -34.90717 -33.21267 -32.00302 -31.74023 -31.07390 -30.11045 -28.33559 -27.31362 -25.13500 -23.65480 -23.54797 -23.16955 -22.50446 -21.45280 -20.81836 -19.93565 -19.47319 -18.21524 -17.61198 -17.33327 -16.88255 -16.81334 -16.38959 -16.21906 -15.79743 -15.33797 -15.22871 -15.01135 -14.83957 -14.74350 -14.56611 -14.38011 -13.98253 -13.86755 -13.64563 -13.55693 -13.26676 -13.18633 -13.08547 -13.06743 -12.87307 -12.85254 -12.64428 -12.19948 -12.08067 -11.99936 -11.95132 -11.84213 -11.53084 -11.51090 -11.46794 -11.39473 -11.26134 -11.12156 -10.93679 -10.44627 -10.38550 -9.55494 -9.28668 -8.02074 -5.35397 1.35463 1.41490 1.48922 1.59134 1.77522 2.49007 2.82606 3.28773 3.50784 3.53292 3.76204 3.78225 3.85553 3.92800 4.05198 4.08144 4.18356 4.20155 4.26474 4.28521 4.30676 4.34686 4.35165 4.39146 4.54688 4.56312 4.57349 4.58121 4.62138 4.66319 4.71766 4.81998 4.90790 4.93349 5.02296 5.04577 5.10850 5.13519 5.21091 5.21652 5.22564 5.25265 5.28213 5.29848 5.37505 5.46869 5.49962 5.58148 5.70905 5.78587 6.15270 6.22528 6.45502 7.08993 7.21794 7.85298 8.05987 9.20112 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.002836 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.967326 B = 9871.048859 C =11216.182300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.600 5.600 3 C 0.505 3.495 4 O -0.568 6.568 5 C 0.048 3.952 6 O -0.391 6.391 7 C 0.084 3.916 8 C -0.137 4.137 9 C -0.113 4.113 10 C -0.123 4.123 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.158 3.842 14 C -0.134 4.134 15 C -0.112 4.112 16 C 0.178 3.822 17 N -0.750 5.750 18 C -0.228 4.228 19 H 0.047 0.953 20 C -0.071 4.071 21 N -0.989 5.989 22 Si 0.961 3.039 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.241 1.241 26 C -0.139 4.139 27 C -0.110 4.110 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.017 0.983 48 H 0.044 0.956 49 H 0.033 0.967 50 H 0.366 0.634 51 H 0.257 0.743 52 H 0.071 0.929 53 H 0.092 0.908 54 H 0.085 0.915 55 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 17.884 25.268 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.334 5.334 3 C 0.293 3.707 4 O -0.447 6.447 5 C -0.032 4.032 6 O -0.311 6.311 7 C 0.027 3.973 8 C -0.175 4.175 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.150 4.150 12 C -0.157 4.157 13 C 0.055 3.945 14 C -0.173 4.173 15 C -0.152 4.152 16 C 0.070 3.930 17 N -0.392 5.392 18 C -0.359 4.359 19 H 0.065 0.935 20 C -0.262 4.262 21 N -0.640 5.640 22 Si 0.787 3.213 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.165 1.165 26 C -0.176 4.176 27 C -0.148 4.148 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.199 0.801 51 H 0.065 0.935 52 H 0.089 0.911 53 H 0.110 0.890 54 H 0.103 0.897 55 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.556 17.725 25.146 31.456 hybrid contribution -0.279 0.119 -1.226 1.263 sum -6.835 17.844 23.920 30.615 Atomic orbital electron populations 1.22486 0.77646 1.06039 1.02620 1.47880 1.08204 1.04739 1.72598 1.20770 0.87759 0.86066 0.76112 1.90647 1.15968 1.87674 1.50373 1.22403 0.91749 0.84767 1.04236 1.88023 1.33507 1.14174 1.95354 1.22367 0.96542 0.81672 0.96689 1.22016 1.01400 0.98177 0.95917 1.21497 0.98856 0.93260 1.01466 1.21594 1.00094 0.99230 0.95093 1.21489 1.01197 0.94560 0.97743 1.21606 0.99083 0.95034 1.00022 1.21014 0.92901 0.83116 0.97469 1.21921 0.98669 1.02301 0.94371 1.21876 0.98134 0.99545 0.95691 1.20418 0.92466 0.95100 0.85007 1.42756 1.21227 1.71162 1.04099 1.19005 1.01528 1.29174 0.86233 0.93513 1.25602 1.03241 1.02608 0.94766 1.69912 1.41051 1.53972 0.99047 0.85322 0.79744 0.77952 0.78245 1.20831 1.22371 1.16536 1.22276 0.98027 1.04205 0.93124 1.21797 0.98198 0.97156 0.97653 0.91941 0.87478 0.88815 0.87241 0.89032 0.90680 0.90991 0.92479 0.90625 0.90919 0.92344 0.90444 0.90937 0.91044 0.92387 0.92563 0.90363 0.91973 0.91214 0.96434 0.93747 0.94856 0.80078 0.93453 0.91078 0.88980 0.89681 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 8.06 127.77 1.03 1.72 16 2 N -0.60 -13.03 2.28 -822.59 -1.87 -14.91 16 3 C 0.50 13.76 7.29 87.65 0.64 14.40 16 4 O -0.57 -21.19 14.20 16.00 0.23 -20.96 16 5 C 0.05 0.96 4.86 71.23 0.35 1.30 16 6 O -0.39 -10.01 9.52 -129.94 -1.24 -11.25 16 7 C 0.08 1.51 2.61 30.59 0.08 1.59 16 8 C -0.14 -1.94 5.54 30.59 0.17 -1.77 16 9 C -0.11 -1.14 5.92 30.60 0.18 -0.96 16 10 C -0.12 -1.31 5.92 30.60 0.18 -1.13 16 11 C -0.11 -1.43 5.92 30.58 0.18 -1.25 16 12 C -0.12 -2.20 5.57 30.58 0.17 -2.03 16 13 C 0.16 3.73 3.05 44.99 0.14 3.86 16 14 C -0.13 -4.28 5.14 30.59 0.16 -4.12 16 15 C -0.11 -4.28 5.34 30.59 0.16 -4.11 16 16 C 0.18 6.67 2.77 44.99 0.12 6.79 16 17 N -0.75 -34.86 4.93 -322.92 -1.59 -36.45 16 18 C -0.23 -13.33 10.41 84.03 0.87 -12.45 16 19 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 20 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 21 N -0.99 -64.97 13.97 21.65 0.30 -64.66 16 22 Si 0.96 45.33 27.74 68.60 1.90 47.24 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.24 -9.84 6.52 99.48 0.65 -9.19 16 26 C -0.14 -3.49 4.84 30.59 0.15 -3.34 16 27 C -0.11 -2.07 4.90 30.60 0.15 -1.92 16 28 H 0.06 0.92 6.49 -2.39 -0.02 0.91 16 29 H 0.11 1.00 5.26 -2.38 -0.01 0.98 16 30 H 0.09 0.66 6.69 -2.39 -0.02 0.65 16 31 H 0.11 1.38 7.15 -2.39 -0.02 1.36 16 32 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 33 H 0.08 1.10 7.79 -2.39 -0.02 1.09 16 34 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 45 H 0.06 2.32 5.76 -2.39 -0.01 2.31 16 46 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.04 1.70 7.46 -2.39 -0.02 1.68 16 49 H 0.03 1.37 8.08 -2.38 -0.02 1.35 16 50 H 0.37 15.84 5.66 -92.71 -0.52 15.32 16 51 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 52 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 53 H 0.09 2.04 3.95 -2.39 -0.01 2.03 16 54 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 55 H 0.11 1.27 6.67 -2.39 -0.02 1.25 16 Total: -1.00 -81.55 404.24 3.21 -78.34 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.28 Total: 29.89 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.20 Total: -7.24 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -3.16 Total: -116.02 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.01 Total: -32.21 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Total: -81.55 3.21 -78.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505782406.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.184 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds