Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47045 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47313 * 180.02562 * 6 5 3 8 8 H 1.09001 * 109.47906 * 305.00006 * 7 6 5 9 9 C 1.53091 * 109.48340 * 184.97570 * 7 6 5 10 10 C 1.53180 * 109.16713 * 182.41549 * 9 7 6 11 11 C 1.53183 * 109.03922 * 56.96385 * 10 9 7 12 12 C 1.53087 * 109.16439 * 303.02321 * 11 10 9 13 13 O 1.42900 * 109.48464 * 65.01979 * 7 6 5 14 14 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 15 15 C 1.53006 * 109.46868 * 59.99572 * 14 2 1 16 16 C 1.53007 * 109.46852 * 180.02562 * 15 14 2 17 17 C 1.52993 * 109.47011 * 60.00125 * 16 15 14 18 18 N 1.46509 * 109.47044 * 179.97438 * 17 16 15 19 19 C 1.36934 * 120.00022 * 275.00526 * 18 17 16 20 20 H 1.08005 * 120.00314 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00033 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00496 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 119.99924 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47128 * 90.00525 * 23 21 19 25 25 H 1.48505 * 109.47563 * 210.00111 * 23 21 19 26 26 H 1.48496 * 109.47582 * 330.00466 * 23 21 19 27 27 C 1.52995 * 109.47353 * 299.99986 * 17 16 15 28 28 C 1.52996 * 109.47356 * 60.00109 * 27 17 16 29 29 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 32 32 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 33 33 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 34 34 H 1.09004 * 109.47016 * 299.99759 * 6 5 3 35 35 H 1.09002 * 109.47172 * 59.99545 * 6 5 3 36 36 H 1.09002 * 109.52319 * 302.31738 * 9 7 6 37 37 H 1.09006 * 109.51869 * 62.50066 * 9 7 6 38 38 H 1.09002 * 109.53491 * 297.10322 * 10 9 7 39 39 H 1.08993 * 109.61687 * 176.88029 * 10 9 7 40 40 H 1.09001 * 109.51794 * 183.12065 * 11 10 9 41 41 H 1.09004 * 109.52154 * 62.93478 * 11 10 9 42 42 H 1.08998 * 109.48116 * 297.62841 * 12 11 10 43 43 H 1.08999 * 109.48217 * 177.59052 * 12 11 10 44 44 H 1.08996 * 109.47508 * 179.97438 * 14 2 1 45 45 H 1.08993 * 109.47519 * 299.99954 * 15 14 2 46 46 H 1.09007 * 109.47040 * 60.00609 * 15 14 2 47 47 H 1.09005 * 109.47143 * 299.99895 * 16 15 14 48 48 H 1.09007 * 109.46860 * 180.02562 * 16 15 14 49 49 H 1.08993 * 109.47316 * 60.00315 * 17 16 15 50 50 H 0.96997 * 119.99468 * 94.99334 * 18 17 16 51 51 H 0.96997 * 120.00777 * 179.97438 * 22 21 19 52 52 H 1.09005 * 109.46819 * 300.00242 * 27 17 16 53 53 H 1.09003 * 109.47134 * 180.02562 * 27 17 16 54 54 H 1.09001 * 109.47376 * 180.02562 * 28 27 17 55 55 H 1.08996 * 109.47223 * 60.00114 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0023 8 1 0.9222 4.9809 -0.8392 9 6 2.6045 6.1214 -0.1223 10 6 1.8369 7.4455 -0.0596 11 6 1.0390 7.4992 1.2469 12 6 0.1095 6.2849 1.3183 13 8 0.8841 5.0876 1.2238 14 6 2.1975 -1.2687 -0.0006 15 6 1.8278 -2.0705 -1.2502 16 6 2.5924 -3.3958 -1.2504 17 6 2.2223 -4.1983 -0.0016 18 7 2.9540 -5.4676 -0.0021 19 6 2.4543 -6.5456 -0.6828 20 1 1.5206 -6.4603 -1.2190 21 6 3.1472 -7.7484 -0.6829 22 7 2.6668 -8.7847 -1.3368 23 14 4.7617 -7.8962 0.2449 24 1 4.4937 -8.3364 1.6377 25 1 5.6315 -8.8926 -0.4304 26 1 5.4435 -6.5772 0.2654 27 6 2.5919 -3.3966 1.2480 28 6 1.8274 -2.0713 1.2483 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 0.7585 2.5302 -0.8892 33 1 0.7590 2.5298 0.8908 34 1 3.0063 3.5771 0.8911 35 1 3.0063 3.5779 -0.8889 36 1 3.3225 6.0776 0.6967 37 1 3.1313 6.0503 -1.0740 38 1 1.1542 7.5115 -0.9068 39 1 2.5398 8.2778 -0.0921 40 1 0.4463 8.4136 1.2743 41 1 1.7252 7.4831 2.0937 42 1 -0.6026 6.3231 0.4940 43 1 -0.4297 6.2950 2.2655 44 1 3.2691 -1.0696 -0.0009 45 1 0.7562 -2.2697 -1.2502 46 1 2.0912 -1.4985 -2.1400 47 1 3.6642 -3.1970 -1.2502 48 1 2.3294 -3.9668 -2.1409 49 1 1.1507 -4.3972 -0.0018 50 1 3.7924 -5.5442 0.4796 51 1 3.1512 -9.6251 -1.3372 52 1 3.6637 -3.1977 1.2482 53 1 2.3286 -3.9686 2.1377 54 1 2.0910 -1.4999 2.1383 55 1 0.7557 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505786213.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = -119.190077 kcal Electronic energy + Delta-G solvation = -29954.966081 eV Core-core repulsion = 25989.979926 eV Total energy + Delta-G solvation = -3964.986155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.33052 -40.32736 -39.35957 -36.84956 -35.22135 -34.81603 -34.51248 -33.08229 -31.72598 -31.15668 -29.50120 -27.71029 -26.72997 -25.28103 -24.64278 -23.61686 -22.93034 -22.03350 -21.20568 -20.88733 -19.90586 -19.53449 -18.03983 -17.50837 -17.36668 -16.83448 -16.68021 -16.53068 -16.13957 -15.54828 -15.42292 -15.18153 -15.03532 -14.77751 -14.70070 -14.51913 -14.37883 -14.35591 -13.70974 -13.60767 -13.57127 -13.44119 -13.19816 -13.11396 -12.97542 -12.88035 -12.67051 -12.39352 -12.14601 -12.11079 -12.07130 -12.04464 -11.95466 -11.82995 -11.78216 -11.56688 -11.49464 -11.16309 -11.14556 -10.90090 -10.71673 -10.30952 -9.57464 -9.29575 -8.01444 -5.33900 1.37943 1.40026 1.47365 1.66853 2.03014 2.48742 2.87474 3.29577 3.50921 3.57601 3.72680 3.80251 3.86532 3.94547 3.98755 4.05859 4.15850 4.19639 4.27806 4.32677 4.33074 4.35267 4.38512 4.48893 4.53414 4.55919 4.59941 4.62831 4.69510 4.75300 4.79591 4.82367 4.88259 4.89876 4.95031 5.01044 5.04893 5.10339 5.12194 5.14450 5.15844 5.20290 5.20861 5.24850 5.30144 5.42131 5.48217 5.57477 5.62712 5.79411 6.23257 6.36804 6.46781 7.09225 7.22201 7.86676 8.05072 9.20070 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.034555 B = 0.001766 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.101805 B =15855.595665 C =16040.203828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.609 5.609 3 C 0.504 3.496 4 O -0.592 6.592 5 C -0.124 4.124 6 C -0.094 4.094 7 C 0.095 3.905 8 H 0.074 0.926 9 C -0.153 4.153 10 C -0.122 4.122 11 C -0.157 4.157 12 C 0.055 3.945 13 O -0.398 6.398 14 C 0.143 3.857 15 C -0.107 4.107 16 C -0.125 4.125 17 C 0.177 3.823 18 N -0.754 5.754 19 C -0.225 4.225 20 H 0.059 0.941 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.952 3.048 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.257 1.257 27 C -0.117 4.117 28 C -0.108 4.108 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.043 0.957 49 H 0.050 0.950 50 H 0.363 0.637 51 H 0.256 0.744 52 H 0.056 0.944 53 H 0.070 0.930 54 H 0.070 0.930 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 36.986 4.903 38.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.340 5.340 3 C 0.295 3.705 4 O -0.473 6.473 5 C -0.163 4.163 6 C -0.132 4.132 7 C 0.038 3.962 8 H 0.092 0.908 9 C -0.191 4.191 10 C -0.160 4.160 11 C -0.195 4.195 12 C -0.021 4.021 13 O -0.318 6.318 14 C 0.039 3.961 15 C -0.146 4.146 16 C -0.166 4.166 17 C 0.069 3.931 18 N -0.397 5.397 19 C -0.356 4.356 20 H 0.077 0.923 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.182 1.182 27 C -0.156 4.156 28 C -0.147 4.147 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.196 0.804 51 H 0.065 0.935 52 H 0.075 0.925 53 H 0.089 0.911 54 H 0.088 0.912 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.979 36.730 4.930 37.908 hybrid contribution 1.295 -0.793 -0.004 1.519 sum -6.683 35.937 4.926 36.883 Atomic orbital electron populations 1.22105 0.77278 1.04911 1.03328 1.48052 1.08451 1.05013 1.72499 1.21440 0.87732 0.86717 0.74646 1.90672 1.16330 1.88076 1.52205 1.21648 0.99097 0.89361 1.06210 1.21319 0.97129 0.91810 1.02921 1.22112 0.92958 0.93892 0.87285 0.90824 1.22214 0.98682 0.95331 1.02875 1.21602 0.99403 0.96971 0.97986 1.22199 0.99572 0.99491 0.98197 1.22721 0.92750 0.83643 1.02991 1.87916 1.63194 1.41520 1.39144 1.20961 0.96940 0.82893 0.95280 1.21698 1.01108 0.94738 0.97073 1.22018 0.99495 0.95513 0.99578 1.20445 0.95286 0.83942 0.93428 1.42866 1.25745 1.09141 1.61913 1.19047 1.04245 0.89363 1.22940 0.92279 1.25451 1.02494 0.95657 1.02005 1.69872 1.41883 1.02713 1.49027 0.85451 0.80372 0.77773 0.78424 1.20371 1.22443 1.18151 1.21699 1.00297 0.95769 0.97793 1.21699 1.01403 0.94479 0.97074 0.91200 0.88621 0.89998 0.86609 0.86970 0.92700 0.90442 0.92308 0.90223 0.90910 0.91036 0.89428 0.92148 0.92067 0.88139 0.90950 0.90325 0.92287 0.93544 0.93794 0.93222 0.80414 0.93469 0.92508 0.91102 0.91150 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.30 127.77 1.19 1.98 16 2 N -0.61 -12.43 2.76 -822.58 -2.27 -14.71 16 3 C 0.50 11.68 7.67 87.66 0.67 12.35 16 4 O -0.59 -19.28 15.31 -3.02 -0.05 -19.32 16 5 C -0.12 -1.82 4.15 29.85 0.12 -1.70 16 6 C -0.09 -1.56 4.21 30.59 0.13 -1.43 16 7 C 0.09 1.21 2.64 30.62 0.08 1.29 16 8 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 9 C -0.15 -1.81 5.42 30.68 0.17 -1.64 16 10 C -0.12 -1.06 6.03 30.72 0.19 -0.88 16 11 C -0.16 -1.33 6.14 30.68 0.19 -1.14 16 12 C 0.06 0.52 6.84 72.01 0.49 1.01 16 13 O -0.40 -5.86 9.94 -148.98 -1.48 -7.34 16 14 C 0.14 3.63 2.52 44.99 0.11 3.74 16 15 C -0.11 -2.85 5.20 30.60 0.16 -2.69 16 16 C -0.13 -4.37 5.50 30.59 0.17 -4.20 16 17 C 0.18 6.57 2.77 44.99 0.12 6.70 16 18 N -0.75 -35.54 4.93 -322.95 -1.59 -37.13 16 19 C -0.22 -12.88 10.41 84.03 0.87 -12.00 16 20 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 21 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 22 N -0.98 -63.67 13.97 21.65 0.30 -63.36 16 23 Si 0.95 46.55 27.73 68.60 1.90 48.45 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 26 H -0.26 -11.54 6.52 99.48 0.65 -10.89 16 27 C -0.12 -3.49 5.39 30.59 0.16 -3.32 16 28 C -0.11 -2.55 5.18 30.59 0.16 -2.40 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.71 6.44 -2.39 -0.02 0.70 16 31 H 0.08 0.94 6.42 -2.38 -0.02 0.93 16 32 H 0.12 1.13 8.11 -2.39 -0.02 1.11 16 33 H 0.11 1.42 7.08 -2.39 -0.02 1.40 16 34 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 35 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 2.28 6.90 -2.39 -0.02 2.27 16 45 H 0.08 1.85 7.67 -2.39 -0.02 1.83 16 46 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 48 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 49 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 50 H 0.36 16.66 5.66 -92.71 -0.52 16.14 16 51 H 0.26 15.86 8.31 -92.71 -0.77 15.08 16 52 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 53 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 54 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 55 H 0.08 1.72 6.66 -2.39 -0.02 1.70 16 Total: -1.00 -75.33 416.13 2.53 -72.80 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.26 Total: 28.34 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 5.46 Total: -7.73 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.56 Total: -115.19 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.53 Total: -26.66 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.90 Total: 48.45 kcal Total: -75.33 2.53 -72.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505786213.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.386 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds