Wall clock time and date at job start Tue Mar 31 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99818 * 2 1 4 4 O 1.21271 * 120.00436 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99711 * 359.97438 * 3 2 1 6 6 C 1.53008 * 109.46956 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47030 * 180.02562 * 6 5 3 8 8 H 1.09004 * 109.48174 * 54.97870 * 7 6 5 9 9 C 1.53087 * 109.47902 * 175.00125 * 7 6 5 10 10 C 1.53180 * 109.16552 * 177.59093 * 9 7 6 11 11 C 1.53173 * 109.03296 * 303.02003 * 10 9 7 12 12 C 1.53089 * 109.16639 * 56.97807 * 11 10 9 13 13 O 1.42902 * 109.41787 * 302.39064 * 12 11 10 14 14 C 1.46497 * 120.00287 * 180.02562 * 2 1 3 15 15 C 1.53001 * 109.46792 * 125.82181 * 14 2 1 16 16 C 1.52995 * 109.47141 * 299.99603 * 15 14 2 17 17 C 1.52995 * 109.47862 * 300.00097 * 16 15 14 18 18 N 1.46495 * 109.47214 * 179.97438 * 17 16 15 19 19 C 1.36940 * 119.99978 * 85.00916 * 18 17 16 20 20 H 1.08001 * 119.99474 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00301 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99902 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00167 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46914 * 89.99936 * 23 21 19 25 25 H 1.48499 * 109.47045 * 209.99550 * 23 21 19 26 26 H 1.48499 * 109.47156 * 329.99861 * 23 21 19 27 27 C 1.53003 * 109.46482 * 59.99843 * 17 16 15 28 28 C 1.52991 * 109.47502 * 300.00126 * 27 17 16 29 29 H 1.09001 * 109.47518 * 84.08140 * 1 2 3 30 30 H 1.09002 * 109.46569 * 204.07831 * 1 2 3 31 31 H 1.08994 * 109.47295 * 324.07796 * 1 2 3 32 32 H 1.08999 * 109.47369 * 60.00386 * 5 3 2 33 33 H 1.08994 * 109.47315 * 300.00143 * 5 3 2 34 34 H 1.09003 * 109.47067 * 300.00208 * 6 5 3 35 35 H 1.08999 * 109.46737 * 60.00034 * 6 5 3 36 36 H 1.09007 * 109.52475 * 297.49315 * 9 7 6 37 37 H 1.09001 * 109.52750 * 57.68306 * 9 7 6 38 38 H 1.08997 * 109.54174 * 62.88328 * 10 9 7 39 39 H 1.08998 * 109.54472 * 183.06288 * 10 9 7 40 40 H 1.09005 * 109.51921 * 176.88511 * 11 10 9 41 41 H 1.09005 * 109.52502 * 297.06992 * 11 10 9 42 42 H 1.09007 * 109.47920 * 62.37179 * 12 11 10 43 43 H 1.08999 * 109.48296 * 182.39503 * 12 11 10 44 44 H 1.08994 * 109.47323 * 245.82511 * 14 2 1 45 45 H 1.08999 * 109.47273 * 60.00764 * 15 14 2 46 46 H 1.09010 * 109.46654 * 180.02562 * 15 14 2 47 47 H 1.09008 * 109.46862 * 180.02562 * 16 15 14 48 48 H 1.09002 * 109.47118 * 60.00547 * 16 15 14 49 49 H 1.09002 * 109.47121 * 300.00448 * 17 16 15 50 50 H 0.97003 * 120.00458 * 264.99601 * 18 17 16 51 51 H 0.96996 * 119.99863 * 180.02562 * 22 21 19 52 52 H 1.09007 * 109.46655 * 179.97438 * 27 17 16 53 53 H 1.09006 * 109.47359 * 60.00766 * 27 17 16 54 54 H 1.09002 * 109.47323 * 300.00143 * 28 27 17 55 55 H 1.08999 * 109.47414 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3852 2.4723 -0.0006 6 6 2.3795 3.6353 0.0002 7 6 1.6144 4.9603 0.0002 8 1 0.9215 4.9800 0.8415 9 6 2.6041 6.1213 0.1268 10 6 1.8365 7.4455 0.0655 11 6 1.0395 7.5008 -1.2413 12 6 0.1102 6.2865 -1.3151 13 8 0.8846 5.0892 -1.2216 14 6 2.1976 -1.2687 -0.0006 15 6 3.1837 -1.2876 -1.1702 16 6 2.4170 -1.1408 -2.4861 17 6 1.4293 -2.3000 -2.6330 18 7 0.6949 -2.1590 -3.8927 19 6 1.2319 -2.6420 -5.0562 20 1 2.1971 -3.1264 -5.0450 21 6 0.5363 -2.5079 -6.2498 22 7 -0.6398 -1.9171 -6.2634 23 14 1.2692 -3.1661 -7.8370 24 1 0.8410 -4.5744 -8.0333 25 1 0.7983 -2.3418 -8.9789 26 1 2.7510 -3.1054 -7.7605 27 6 0.4432 -2.2810 -1.4633 28 6 1.2098 -2.4278 -0.1475 29 1 -0.3634 0.1060 -1.0222 30 1 -0.3632 -0.9383 0.4193 31 1 -0.3633 0.8322 0.6029 32 1 0.7583 2.5303 0.8892 33 1 0.7589 2.5298 -0.8907 34 1 3.0055 3.5776 0.8907 35 1 3.0068 3.5776 -0.8893 36 1 3.1306 6.0492 1.0786 37 1 3.3225 6.0785 -0.6919 38 1 1.1533 7.5103 0.9123 39 1 2.5404 8.2769 0.1004 40 1 0.4468 8.4153 -1.2680 41 1 1.7262 7.4859 -2.0878 42 1 -0.6025 6.3237 -0.4911 43 1 -0.4286 6.2981 -2.2625 44 1 2.7437 -1.3733 0.9369 45 1 3.8874 -0.4618 -1.0656 46 1 3.7285 -2.2318 -1.1709 47 1 3.1196 -1.1548 -3.3194 48 1 1.8720 -0.1969 -2.4857 49 1 1.9744 -3.2439 -2.6334 50 1 -0.1720 -1.7237 -3.9027 51 1 -1.1261 -1.8238 -7.0975 52 1 -0.2608 -3.1066 -1.5683 53 1 -0.1019 -1.3370 -1.4629 54 1 1.7549 -3.3718 -0.1479 55 1 0.5072 -2.4148 0.6858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505786214.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:20 Heat of formation + Delta-G solvation = -100.939971 kcal Electronic energy + Delta-G solvation = -31157.881598 eV Core-core repulsion = 27193.686827 eV Total energy + Delta-G solvation = -3964.194771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65087 -40.37009 -39.13563 -36.57811 -35.13074 -34.62033 -34.52274 -32.80398 -31.94859 -30.98554 -29.53504 -27.43080 -26.71063 -25.46759 -24.76196 -23.57542 -22.98344 -22.09381 -21.22499 -20.91240 -19.66422 -19.08903 -17.88541 -17.53038 -17.16229 -16.85199 -16.82095 -16.56647 -15.92516 -15.55436 -15.41125 -15.34875 -15.26708 -14.93891 -14.68393 -14.47134 -14.21823 -13.94114 -13.65200 -13.57528 -13.55683 -13.19201 -13.07345 -12.91192 -12.85402 -12.79812 -12.78258 -12.52198 -12.17309 -12.14631 -12.08998 -12.03653 -11.90853 -11.81907 -11.56427 -11.43723 -11.31834 -11.16586 -11.07746 -10.89808 -10.40061 -10.28623 -9.47292 -8.97854 -7.94707 -5.21798 1.44097 1.45711 1.53942 1.72859 2.14025 2.54974 2.88522 3.37733 3.52145 3.74472 3.78916 3.86467 3.91282 3.95854 4.00255 4.06535 4.14774 4.29245 4.32202 4.33787 4.35852 4.39474 4.43297 4.47997 4.58312 4.60325 4.62879 4.67330 4.68795 4.74484 4.79603 4.86219 4.87673 4.93943 4.95380 5.04223 5.07742 5.10221 5.14035 5.16495 5.19989 5.24933 5.27191 5.30643 5.32237 5.41942 5.47610 5.55827 5.65294 5.78910 6.28875 6.38642 6.52742 7.29743 7.34185 8.12272 8.35425 9.28726 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.002879 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.216164 B = 9722.284160 C =11448.325362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.604 5.604 3 C 0.506 3.494 4 O -0.580 6.580 5 C -0.129 4.129 6 C -0.091 4.091 7 C 0.092 3.908 8 H 0.078 0.922 9 C -0.152 4.152 10 C -0.120 4.120 11 C -0.157 4.157 12 C 0.054 3.946 13 O -0.404 6.404 14 C 0.155 3.845 15 C -0.131 4.131 16 C -0.110 4.110 17 C 0.175 3.825 18 N -0.736 5.736 19 C -0.237 4.237 20 H 0.067 0.933 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.968 3.032 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.275 1.275 27 C -0.136 4.136 28 C -0.110 4.110 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.020 0.980 48 H 0.034 0.966 49 H 0.033 0.967 50 H 0.372 0.628 51 H 0.250 0.750 52 H 0.060 0.940 53 H 0.084 0.916 54 H 0.085 0.915 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 15.090 21.991 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.336 5.336 3 C 0.295 3.705 4 O -0.461 6.461 5 C -0.168 4.168 6 C -0.129 4.129 7 C 0.035 3.965 8 H 0.096 0.904 9 C -0.189 4.189 10 C -0.157 4.157 11 C -0.194 4.194 12 C -0.023 4.023 13 O -0.324 6.324 14 C 0.052 3.948 15 C -0.170 4.170 16 C -0.151 4.151 17 C 0.067 3.933 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.085 0.915 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.797 3.203 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.201 1.201 27 C -0.174 4.174 28 C -0.148 4.148 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.204 0.796 51 H 0.059 0.941 52 H 0.079 0.921 53 H 0.102 0.898 54 H 0.104 0.896 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.767 14.827 21.729 26.317 hybrid contribution 0.241 0.003 -1.636 1.653 sum 1.008 14.830 20.093 24.993 Atomic orbital electron populations 1.22313 0.78280 1.05406 1.01897 1.47974 1.07893 1.05381 1.72395 1.21166 0.87765 0.86443 0.75077 1.90598 1.15755 1.87981 1.51721 1.21651 0.99268 0.90349 1.05535 1.21307 0.97005 0.91733 1.02835 1.22186 0.93080 0.94091 0.87153 0.90448 1.22209 0.98544 0.95215 1.02969 1.21593 0.99395 0.96996 0.97724 1.22195 0.99528 0.99271 0.98444 1.22719 0.92923 0.83830 1.02780 1.87968 1.63353 1.41613 1.39480 1.21007 0.92821 0.83361 0.97573 1.21917 0.98530 1.02394 0.94155 1.21888 0.97998 0.99383 0.95814 1.20430 0.92362 0.94849 0.85657 1.42611 1.21528 1.70061 1.03326 1.19558 1.01229 1.28982 0.87143 0.91486 1.25483 0.97672 1.02808 1.00792 1.69802 1.15130 1.50486 1.26426 0.85221 0.77782 0.77570 0.79722 1.21109 1.22115 1.20074 1.22211 0.98070 1.03461 0.93629 1.21786 0.98194 0.97465 0.97347 0.93149 0.88088 0.88935 0.86077 0.89004 0.89463 0.93561 0.89573 0.92715 0.90532 0.90740 0.89235 0.92524 0.91743 0.88936 0.90197 0.91631 0.91028 0.96156 0.94722 0.94843 0.79603 0.94075 0.92111 0.89782 0.89632 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 8.06 127.77 1.03 2.18 16 2 N -0.60 -14.86 2.28 -822.60 -1.87 -16.74 16 3 C 0.51 14.09 7.21 87.66 0.63 14.73 16 4 O -0.58 -20.35 13.69 -3.00 -0.04 -20.39 16 5 C -0.13 -2.74 4.23 29.85 0.13 -2.61 16 6 C -0.09 -2.00 4.21 30.60 0.13 -1.87 16 7 C 0.09 1.66 2.64 30.62 0.08 1.74 16 8 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 9 C -0.15 -2.39 5.42 30.68 0.17 -2.22 16 10 C -0.12 -1.48 6.03 30.71 0.19 -1.30 16 11 C -0.16 -2.16 6.14 30.68 0.19 -1.98 16 12 C 0.05 0.87 6.84 72.01 0.49 1.37 16 13 O -0.40 -9.12 9.95 -148.98 -1.48 -10.60 16 14 C 0.16 3.97 3.05 44.99 0.14 4.11 16 15 C -0.13 -4.30 5.14 30.59 0.16 -4.14 16 16 C -0.11 -4.46 5.34 30.59 0.16 -4.29 16 17 C 0.18 7.13 2.77 44.99 0.12 7.26 16 18 N -0.74 -38.26 5.12 -322.95 -1.65 -39.92 16 19 C -0.24 -13.70 9.93 84.03 0.83 -12.87 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 23 Si 0.97 47.78 29.55 68.60 2.03 49.80 16 24 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 C -0.14 -4.11 4.84 30.59 0.15 -3.96 16 28 C -0.11 -2.43 4.90 30.59 0.15 -2.28 16 29 H 0.05 1.15 6.49 -2.39 -0.02 1.14 16 30 H 0.10 1.49 5.26 -2.39 -0.01 1.48 16 31 H 0.09 1.16 6.69 -2.39 -0.02 1.15 16 32 H 0.12 1.72 7.42 -2.39 -0.02 1.70 16 33 H 0.09 2.18 7.79 -2.39 -0.02 2.16 16 34 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.07 2.43 5.76 -2.39 -0.01 2.42 16 46 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.03 1.48 7.46 -2.39 -0.02 1.46 16 49 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 50 H 0.37 20.49 7.80 -92.71 -0.72 19.76 16 51 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 52 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 53 H 0.08 2.47 3.95 -2.38 -0.01 2.46 16 54 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 55 H 0.10 1.59 6.67 -2.39 -0.02 1.57 16 Total: -1.00 -74.54 406.91 2.61 -71.93 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.14 Total: 36.03 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.21 Total: -10.13 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -3.25 Total: -116.64 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.52 Total: -30.99 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -74.54 2.61 -71.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505786214.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.012 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds