Wall clock time and date at job start Tue Mar 31 2020 22:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00239 * 2 1 4 4 C 1.52999 * 109.47599 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46946 * 64.99914 * 4 3 2 6 6 C 1.36936 * 119.99816 * 270.00219 * 5 4 3 7 7 H 1.08007 * 120.00398 * 141.76259 * 6 5 4 8 8 C 1.38814 * 120.00313 * 321.75773 * 6 5 4 9 9 N 1.31619 * 120.00405 * 156.55615 * 8 6 5 10 10 Si 1.86808 * 119.99830 * 336.56595 * 8 6 5 11 11 H 1.48494 * 109.47369 * 95.53478 * 10 8 6 12 12 H 1.48501 * 109.46935 * 215.53686 * 10 8 6 13 13 H 1.48499 * 109.46630 * 335.53171 * 10 8 6 14 14 C 1.46499 * 120.00073 * 90.00275 * 5 4 3 15 15 C 1.52997 * 109.47025 * 87.29774 * 14 5 4 16 16 N 1.46499 * 109.47025 * 180.02562 * 15 14 5 17 17 C 1.34777 * 119.99914 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00273 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99869 * 179.97438 * 17 16 15 20 20 C 1.50220 * 117.30364 * 179.97438 * 19 17 16 21 21 H 1.08996 * 113.56108 * 1.09132 * 20 19 17 22 22 C 1.48771 * 129.35880 * 209.04855 * 20 19 17 23 23 C 1.54168 * 112.50394 * 225.98392 * 22 20 19 24 24 C 1.54376 * 109.16544 * 63.91574 * 23 22 20 25 25 C 1.51226 * 111.07245 * 258.99565 * 24 23 22 26 26 C 1.49158 * 120.89589 * 35.29237 * 25 24 23 27 27 C 1.54812 * 109.51541 * 82.01943 * 26 25 24 28 28 C 1.50914 * 117.30583 * 250.70168 * 19 17 16 29 29 H 1.08996 * 117.53972 * 144.80494 * 28 19 17 30 30 H 1.09001 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47034 * 300.00096 * 1 2 3 32 32 H 1.08998 * 109.47178 * 60.00151 * 1 2 3 33 33 H 1.09000 * 109.46906 * 59.99384 * 3 2 1 34 34 H 1.09002 * 109.46783 * 300.00243 * 3 2 1 35 35 H 1.08998 * 109.46905 * 304.99943 * 4 3 2 36 36 H 1.08993 * 109.47253 * 184.99905 * 4 3 2 37 37 H 0.96999 * 119.99988 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47103 * 327.29468 * 14 5 4 39 39 H 1.08999 * 109.47011 * 207.29655 * 14 5 4 40 40 H 1.08999 * 109.47430 * 59.99895 * 15 14 5 41 41 H 1.09003 * 109.46654 * 299.99698 * 15 14 5 42 42 H 0.96997 * 120.00220 * 359.97438 * 16 15 14 43 43 H 1.09003 * 115.33411 * 35.35141 * 19 17 16 44 44 H 1.09000 * 108.87694 * 346.75744 * 22 20 19 45 45 H 1.08990 * 108.87701 * 105.20214 * 22 20 19 46 46 H 1.09005 * 109.51962 * 304.01099 * 23 22 20 47 47 H 1.09000 * 109.57372 * 183.85709 * 23 22 20 48 48 H 1.09006 * 109.15587 * 138.58739 * 24 23 22 49 49 H 1.09003 * 109.15923 * 19.40773 * 24 23 22 50 50 H 1.08999 * 107.13474 * 272.36185 * 25 24 23 51 51 H 1.09000 * 107.12839 * 158.21907 * 25 24 23 52 52 H 1.08999 * 109.46091 * 322.01165 * 26 25 24 53 53 H 1.08995 * 109.45806 * 202.03378 * 26 25 24 54 54 H 1.09003 * 110.85670 * 185.30881 * 27 26 25 55 55 H 1.09006 * 110.85757 * 61.84696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7969 -1.3369 7 1 3.8113 -1.3096 -2.2437 8 6 4.5865 -1.5183 -0.2567 9 7 4.2906 -2.7945 -0.1290 10 14 5.6653 -0.6778 1.0159 11 1 4.8282 -0.2348 2.1596 12 1 6.6970 -1.6311 1.4975 13 1 6.3283 0.5006 0.4019 14 6 4.2864 1.4007 -2.4148 15 6 5.7497 1.8424 -2.3486 16 7 6.0602 2.6791 -3.5104 17 6 7.2995 3.1862 -3.6637 18 8 8.1576 2.9502 -2.8397 19 6 7.6191 4.0465 -4.8591 20 6 9.0189 4.5803 -4.9694 21 1 9.6722 4.2611 -4.1574 22 6 9.5035 5.8319 -5.6113 23 6 10.7453 5.5993 -6.4948 24 6 10.3657 4.6710 -7.6684 25 6 10.8219 3.2527 -7.4093 26 6 10.8031 2.6817 -6.0314 27 6 9.3753 2.1858 -5.6966 28 6 8.5234 3.4575 -5.9140 29 1 8.3253 3.7223 -6.9526 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8515 0.5683 0.8409 36 1 3.9786 2.1765 0.0889 37 1 4.6331 -3.2986 0.6256 38 1 3.6412 2.2792 -2.4132 39 1 4.1202 0.8296 -3.3282 40 1 6.3949 0.9639 -2.3503 41 1 5.9158 2.4135 -1.4352 42 1 5.3739 2.8682 -4.1692 43 1 6.8095 4.6927 -5.1985 44 1 8.7046 6.2444 -6.2275 45 1 9.7543 6.5529 -4.8333 46 1 11.5323 5.1334 -5.9017 47 1 11.0997 6.5534 -6.8850 48 1 10.8364 5.0372 -8.5809 49 1 9.2832 4.6808 -7.7966 50 1 11.8452 3.1725 -7.7761 51 1 10.2134 2.6002 -8.0355 52 1 11.0980 3.4495 -5.3161 53 1 11.5005 1.8459 -5.9752 54 1 9.3141 1.8496 -4.6615 55 1 9.0698 1.3929 -6.3794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508053252.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:37 Heat of formation + Delta-G solvation = -58.021540 kcal Electronic energy + Delta-G solvation = -30520.308899 eV Core-core repulsion = 26557.975210 eV Total energy + Delta-G solvation = -3962.333688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.74302 -39.75278 -38.99417 -37.55130 -35.80626 -35.58575 -34.05590 -33.69327 -31.37311 -29.79759 -29.01220 -27.12294 -26.95983 -26.04343 -24.61791 -23.88390 -22.47700 -21.99293 -21.56699 -20.61215 -20.16084 -18.81053 -17.97510 -17.51640 -17.34234 -16.99728 -16.74489 -16.35140 -15.96795 -15.93034 -15.69421 -15.39716 -15.26255 -15.23096 -14.94267 -14.58141 -14.39071 -14.27808 -14.07881 -13.57339 -13.54272 -13.33243 -13.10438 -12.96877 -12.94708 -12.75662 -12.39881 -12.30265 -12.26051 -12.14409 -11.92273 -11.90426 -11.72296 -11.68444 -11.48877 -11.33746 -11.06341 -10.94892 -10.66359 -10.58374 -10.33018 -10.22150 -10.03912 -8.78860 -8.13673 -5.49648 1.26874 1.39777 1.48068 1.53098 2.09023 2.44629 2.76795 3.09403 3.15242 3.45929 3.65013 3.68720 3.78575 3.97649 3.99389 4.12801 4.18812 4.22083 4.24598 4.32910 4.33660 4.39589 4.42351 4.54138 4.57109 4.61009 4.63555 4.64228 4.67269 4.71488 4.74317 4.85117 4.90610 4.90736 5.00912 5.03247 5.03791 5.07596 5.13429 5.14264 5.18851 5.21581 5.28942 5.38800 5.44729 5.49065 5.52951 5.61556 5.65637 5.99361 6.23483 6.61057 6.62825 7.02804 7.31878 7.67770 8.06673 9.06735 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.002395 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.971838 B =11686.348733 C =12321.180007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.042 0.958 8 C -0.006 4.006 9 N -0.943 5.943 10 Si 0.924 3.076 11 H -0.276 1.276 12 H -0.315 1.315 13 H -0.264 1.264 14 C 0.147 3.853 15 C 0.110 3.890 16 N -0.706 5.706 17 C 0.530 3.470 18 O -0.592 6.592 19 C -0.146 4.146 20 C -0.139 4.139 21 H 0.071 0.929 22 C -0.077 4.077 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.110 4.110 27 C -0.099 4.099 28 C -0.128 4.128 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.042 0.958 42 H 0.418 0.582 43 H 0.156 0.844 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.051 0.949 51 H 0.056 0.944 52 H 0.061 0.939 53 H 0.056 0.944 54 H 0.037 0.963 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 21.434 -15.934 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.028 4.028 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.361 4.361 7 H 0.060 0.940 8 C -0.203 4.203 9 N -0.587 5.587 10 Si 0.754 3.246 11 H -0.204 1.204 12 H -0.245 1.245 13 H -0.189 1.189 14 C 0.021 3.979 15 C -0.017 4.017 16 N -0.358 5.358 17 C 0.318 3.682 18 O -0.472 6.472 19 C -0.167 4.167 20 C -0.158 4.158 21 H 0.089 0.911 22 C -0.115 4.115 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.137 4.137 28 C -0.146 4.146 29 H 0.167 0.833 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.255 0.745 43 H 0.174 0.826 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.080 0.920 53 H 0.075 0.925 54 H 0.056 0.944 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.495 20.952 -15.277 26.506 hybrid contribution 0.214 -0.427 1.215 1.305 sum 5.710 20.525 -14.062 25.527 Atomic orbital electron populations 1.22791 0.81299 1.02435 1.00254 1.88231 1.19889 1.28502 1.95249 1.23173 0.95106 0.84533 0.99952 1.21466 0.92714 0.97250 0.88753 1.44039 1.75929 1.02410 1.10160 1.18427 1.35206 0.81750 1.00742 0.94026 1.25844 0.99268 0.95203 0.99959 1.69997 1.46644 1.10212 1.31889 0.86171 0.79660 0.78329 0.80453 1.20369 1.24450 1.18870 1.21163 0.91047 0.94915 0.90764 1.21939 0.99621 0.92554 0.87576 1.45787 1.12492 1.51062 1.26488 1.20418 0.81689 0.79681 0.86406 1.90677 1.48378 1.61909 1.46280 1.21650 0.97325 1.01925 0.95784 1.21159 0.94602 0.98791 1.01236 0.91095 1.20358 0.98399 0.94029 0.98698 1.21986 0.96697 1.00058 0.96318 1.21633 1.01944 0.93484 0.98089 1.20330 1.01667 0.97274 0.95966 1.21209 0.95295 1.00007 0.98264 1.22004 0.95516 0.95913 1.00223 1.23172 0.99189 0.96042 0.96156 0.83339 0.90692 0.93187 0.93432 0.92411 0.92412 0.94921 0.89567 0.93334 0.89796 0.92031 0.95413 0.93951 0.74504 0.82638 0.90427 0.92177 0.92653 0.90252 0.90841 0.90872 0.92985 0.92477 0.91994 0.92524 0.94439 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -17.23 10.18 -148.98 -1.52 -18.74 16 3 C 0.05 1.80 6.28 71.98 0.45 2.25 16 4 C 0.12 5.04 4.96 86.38 0.43 5.47 16 5 N -0.60 -27.24 2.04 -702.02 -1.43 -28.67 16 6 C -0.23 -13.06 9.39 84.03 0.79 -12.27 16 7 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 8 C -0.01 -0.37 5.28 84.86 0.45 0.08 16 9 N -0.94 -60.87 13.97 21.65 0.30 -60.56 16 10 Si 0.92 48.69 25.16 68.60 1.73 50.42 16 11 H -0.28 -13.93 6.67 99.48 0.66 -13.26 16 12 H -0.32 -17.13 7.11 99.48 0.71 -16.43 16 13 H -0.26 -13.59 7.11 99.48 0.71 -12.89 16 14 C 0.15 5.13 5.78 86.38 0.50 5.63 16 15 C 0.11 4.01 6.00 86.38 0.52 4.53 16 16 N -0.71 -19.41 5.56 -463.06 -2.57 -21.99 16 17 C 0.53 15.96 6.86 87.66 0.60 16.56 16 18 O -0.59 -24.10 15.13 -3.04 -0.05 -24.15 16 19 C -0.15 -2.91 5.94 -13.11 -0.08 -2.98 16 20 C -0.14 -2.74 3.53 -12.39 -0.04 -2.78 16 21 H 0.07 1.95 6.44 -2.39 -0.02 1.93 16 22 C -0.08 -1.06 5.49 29.65 0.16 -0.89 16 23 C -0.11 -1.34 5.69 31.46 0.18 -1.16 16 24 C -0.11 -1.21 5.38 30.48 0.16 -1.05 16 25 C -0.11 -1.58 4.44 28.79 0.13 -1.45 16 26 C -0.11 -2.10 5.43 29.99 0.16 -1.94 16 27 C -0.10 -2.25 5.95 31.76 0.19 -2.06 16 28 C -0.13 -2.29 4.43 -10.29 -0.05 -2.33 16 29 H 0.15 1.87 5.48 -2.39 -0.01 1.85 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.03 1.56 3.45 -2.39 -0.01 1.55 16 36 H 0.09 2.93 8.07 -2.39 -0.02 2.91 16 37 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 39 H 0.06 2.15 8.02 -2.39 -0.02 2.13 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.42 7.92 8.47 -92.71 -0.79 7.13 16 43 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.08 0.79 8.06 -2.39 -0.02 0.77 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.05 0.80 6.33 -2.38 -0.02 0.79 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.07 0.68 5.22 -2.39 -0.01 0.67 16 50 H 0.05 0.67 8.12 -2.39 -0.02 0.66 16 51 H 0.06 0.75 7.84 -2.39 -0.02 0.73 16 52 H 0.06 1.29 4.58 -2.39 -0.01 1.28 16 53 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 54 H 0.04 1.16 6.61 -2.39 -0.02 1.15 16 55 H 0.07 1.55 8.13 -2.38 -0.02 1.53 16 Total: -1.00 -79.43 411.73 2.30 -77.13 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.04 Total: 18.83 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.80 Total: 7.73 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -3.70 Total: -111.22 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.56 Total: -42.89 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.73 Total: 50.42 kcal Total: -79.43 2.30 -77.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508053252.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.106 kcal (2) G-P(sol) polarization free energy of solvation -79.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds