Wall clock time and date at job start Tue Mar 31 2020 22:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42899 * 113.99968 * 2 1 4 4 C 1.53000 * 109.46630 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47292 * 65.70903 * 4 3 2 6 6 C 1.36935 * 119.99566 * 267.90060 * 5 4 3 7 7 H 1.08004 * 119.99584 * 142.25637 * 6 5 4 8 8 C 1.38807 * 120.00428 * 322.26233 * 6 5 4 9 9 N 1.31614 * 120.00076 * 156.38271 * 8 6 5 10 10 Si 1.86806 * 119.99751 * 336.37936 * 8 6 5 11 11 H 1.48501 * 109.46808 * 95.51679 * 10 8 6 12 12 H 1.48496 * 109.47170 * 215.51052 * 10 8 6 13 13 H 1.48495 * 109.47306 * 335.51143 * 10 8 6 14 14 C 1.46498 * 119.99789 * 87.90295 * 5 4 3 15 15 C 1.52999 * 109.46964 * 269.99697 * 14 5 4 16 16 N 1.46499 * 109.46705 * 180.02562 * 15 14 5 17 17 C 1.34787 * 119.99784 * 180.02562 * 16 15 14 18 18 O 1.21276 * 119.99917 * 0.02562 * 17 16 15 19 19 C 1.50212 * 120.00054 * 180.02562 * 17 16 15 20 20 H 1.08099 * 115.79295 * 32.21680 * 19 17 16 21 21 C 1.53915 * 117.38210 * 179.97438 * 19 17 16 22 22 H 1.11043 * 113.20319 * 357.50170 * 21 19 17 23 23 C 1.53144 * 115.73980 * 227.45171 * 21 19 17 24 24 C 1.54901 * 107.52351 * 206.52544 * 23 21 19 25 25 C 1.53601 * 108.38505 * 109.43287 * 24 23 21 26 26 C 1.51042 * 120.43882 * 299.78294 * 25 24 23 27 27 C 1.53696 * 114.06476 * 52.90027 * 26 25 24 28 28 C 1.54560 * 106.36801 * 251.14541 * 27 26 25 29 29 C 1.49559 * 60.63019 * 107.18113 * 21 19 17 30 30 H 1.12174 * 117.10563 * 254.72721 * 29 21 19 31 31 H 1.08999 * 109.46991 * 300.00201 * 1 2 3 32 32 H 1.09005 * 109.46459 * 59.99737 * 1 2 3 33 33 H 1.08994 * 109.47014 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47297 * 60.00277 * 3 2 1 35 35 H 1.09002 * 109.47178 * 299.99436 * 3 2 1 36 36 H 1.08999 * 109.47511 * 305.70785 * 4 3 2 37 37 H 1.09005 * 109.46947 * 185.70806 * 4 3 2 38 38 H 0.97008 * 119.99771 * 179.97438 * 9 8 6 39 39 H 1.08991 * 109.47237 * 30.00298 * 14 5 4 40 40 H 1.09002 * 109.46558 * 149.99900 * 14 5 4 41 41 H 1.08991 * 109.47634 * 300.00357 * 15 14 5 42 42 H 1.09002 * 109.47317 * 60.00668 * 15 14 5 43 43 H 0.96996 * 120.00431 * 0.02562 * 16 15 14 44 44 H 1.06022 * 116.29061 * 334.56664 * 23 21 19 45 45 H 1.11839 * 106.91980 * 93.13416 * 23 21 19 46 46 H 1.08730 * 108.95042 * 229.46568 * 24 23 21 47 47 H 1.08874 * 108.60391 * 351.85960 * 24 23 21 48 48 H 1.09215 * 107.96018 * 69.24709 * 25 24 23 49 49 H 1.10335 * 104.72100 * 179.53600 * 25 24 23 50 50 H 1.11247 * 108.96616 * 172.54897 * 26 25 24 51 51 H 1.10145 * 109.71991 * 289.46265 * 26 25 24 52 52 H 1.06287 * 115.24067 * 18.29654 * 27 26 25 53 53 H 1.11856 * 107.13347 * 136.07750 * 27 26 25 54 54 H 1.09824 * 107.87397 * 222.39972 * 28 27 26 55 55 H 1.09896 * 108.50682 * 336.74766 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9780 0.5793 -1.2580 6 6 4.1405 -0.7776 -1.3453 7 1 3.8664 -1.2971 -2.2517 8 6 4.6572 -1.4854 -0.2689 9 7 4.3985 -2.7695 -0.1404 10 14 5.7201 -0.6155 0.9973 11 1 4.8780 -0.1966 2.1465 12 1 6.7810 -1.5397 1.4721 13 1 6.3460 0.5812 0.3800 14 6 4.2466 1.4257 -2.4232 15 6 2.9661 1.5826 -3.2456 16 7 3.2349 2.4286 -4.4111 17 6 2.2465 2.7068 -5.2842 18 8 1.1345 2.2573 -5.1047 19 6 2.5222 3.5737 -6.4795 20 1 3.5187 3.5024 -6.8925 21 6 1.3502 3.8522 -7.4375 22 1 0.4149 3.3281 -7.1485 23 6 1.6509 3.6671 -8.9277 24 6 0.6841 4.5853 -9.7161 25 6 1.4972 5.7397 -10.3206 26 6 2.2638 6.6858 -9.4270 27 6 3.2119 5.9861 -8.4401 28 6 2.5828 6.1539 -7.0384 29 6 1.8383 4.9436 -6.5390 30 1 1.2014 5.1981 -5.6514 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6887 1.8464 0.8900 35 1 1.6888 1.8464 -0.8900 36 1 3.8500 0.5581 0.8353 37 1 3.9785 2.1753 0.1029 38 1 4.7600 -3.2642 0.6117 39 1 4.5866 2.4060 -2.0895 40 1 5.0189 0.9632 -3.0379 41 1 2.6261 0.6023 -3.5793 42 1 2.1938 2.0451 -2.6310 43 1 4.1242 2.7884 -4.5544 44 1 2.6639 3.7791 -9.2198 45 1 1.3618 2.6191 -9.1904 46 1 0.2098 4.0052 -10.5040 47 1 -0.0421 5.0035 -9.0211 48 1 2.1352 5.3275 -11.1054 49 1 0.7574 6.3458 -10.8709 50 1 2.8861 7.3566 -10.0598 51 1 1.5596 7.3263 -8.8728 52 1 3.4575 4.9809 -8.6830 53 1 4.1763 6.5526 -8.4518 54 1 3.3886 6.4026 -6.3348 55 1 1.9177 7.0286 -7.0569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508053253.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:00 Heat of formation + Delta-G solvation = -60.111830 kcal Electronic energy + Delta-G solvation = -30370.651247 eV Core-core repulsion = 26408.226917 eV Total energy + Delta-G solvation = -3962.424330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33524 -39.49587 -39.00319 -37.53184 -35.88477 -35.62091 -33.74320 -33.69181 -31.32779 -29.87080 -28.95321 -27.38673 -27.20333 -26.03557 -24.61535 -23.34485 -22.36499 -22.08344 -21.41215 -20.61741 -20.25062 -18.83424 -18.33752 -17.74773 -17.07564 -16.90958 -16.56869 -16.41250 -16.21123 -15.84507 -15.52680 -15.36227 -15.13448 -15.02933 -14.73935 -14.42904 -14.39629 -14.12362 -13.97983 -13.67530 -13.59858 -13.51705 -13.25288 -12.92956 -12.89570 -12.75755 -12.57691 -12.43936 -12.33145 -11.92872 -11.89557 -11.87111 -11.70971 -11.44515 -11.43573 -11.21213 -11.12354 -10.79061 -10.59685 -10.53151 -10.47812 -10.40480 -10.01089 -8.78473 -8.09749 -5.48866 1.36571 1.45410 1.49419 1.56850 2.15911 2.50755 2.82018 3.09058 3.09496 3.47547 3.65920 3.67406 3.77095 3.90421 4.01054 4.11271 4.14873 4.16586 4.18350 4.23920 4.32808 4.36109 4.39269 4.43289 4.48087 4.54332 4.60838 4.62724 4.65800 4.72771 4.79965 4.81655 4.83011 4.86460 4.95920 4.97353 5.04203 5.10019 5.12711 5.19844 5.20363 5.25771 5.32966 5.34922 5.40972 5.48390 5.51378 5.63816 5.75095 6.00058 6.24802 6.52194 6.61888 7.03811 7.30821 7.69344 8.07341 9.10570 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.002257 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.826306 B =12403.213707 C =12854.503061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.602 5.602 6 C -0.241 4.241 7 H 0.025 0.975 8 C -0.017 4.017 9 N -0.949 5.949 10 Si 0.945 3.055 11 H -0.280 1.280 12 H -0.313 1.313 13 H -0.245 1.245 14 C 0.143 3.857 15 C 0.116 3.884 16 N -0.709 5.709 17 C 0.533 3.467 18 O -0.598 6.598 19 C -0.215 4.215 20 H 0.145 0.855 21 C -0.096 4.096 22 H 0.081 0.919 23 C -0.088 4.088 24 C -0.109 4.109 25 C -0.118 4.118 26 C -0.107 4.107 27 C -0.126 4.126 28 C -0.090 4.090 29 C -0.071 4.071 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.097 0.903 38 H 0.259 0.741 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.021 0.979 42 H 0.049 0.951 43 H 0.416 0.584 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.081 0.919 53 H 0.061 0.939 54 H 0.072 0.928 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 24.559 -16.604 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.371 4.371 7 H 0.043 0.957 8 C -0.213 4.213 9 N -0.592 5.592 10 Si 0.773 3.227 11 H -0.207 1.207 12 H -0.242 1.242 13 H -0.169 1.169 14 C 0.017 3.983 15 C -0.011 4.011 16 N -0.360 5.360 17 C 0.322 3.678 18 O -0.479 6.479 19 C -0.236 4.236 20 H 0.163 0.837 21 C -0.114 4.114 22 H 0.100 0.900 23 C -0.125 4.125 24 C -0.146 4.146 25 C -0.155 4.155 26 C -0.145 4.145 27 C -0.163 4.163 28 C -0.127 4.127 29 C -0.090 4.090 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.253 0.747 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.100 0.900 53 H 0.080 0.920 54 H 0.090 0.910 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.066 23.942 -16.373 29.167 hybrid contribution 0.155 -0.580 0.882 1.067 sum -2.911 23.362 -15.491 28.182 Atomic orbital electron populations 1.22771 0.81544 1.02456 0.99919 1.88203 1.19650 1.28645 1.95201 1.23396 0.96333 0.84419 0.99457 1.21583 0.91674 0.98086 0.88847 1.43963 1.76888 1.02991 1.08619 1.18304 1.35595 0.82374 1.00793 0.95699 1.26006 0.99435 0.95428 1.00390 1.70068 1.46326 1.10660 1.32192 0.85841 0.78788 0.78770 0.79310 1.20718 1.24156 1.16877 1.21123 0.93382 0.95470 0.88358 1.21898 1.00328 0.92424 0.86455 1.45822 1.13964 1.51339 1.24918 1.20290 0.83754 0.80132 0.83641 1.90664 1.25219 1.55157 1.76868 1.22431 1.01574 1.01017 0.98615 0.83725 1.22396 0.95786 1.00291 0.92975 0.90039 1.21657 1.01092 0.99565 0.90177 1.21961 0.97667 0.95956 0.99059 1.21264 0.99183 0.96809 0.98282 1.21774 0.97753 0.97145 0.97807 1.22125 0.98063 1.02230 0.93892 1.21346 0.99518 0.94607 0.97186 1.21551 0.99391 0.88494 0.99537 0.89228 0.92639 0.94707 0.90451 0.92240 0.93712 0.94034 0.88460 0.93256 0.89760 0.92015 0.96031 0.93242 0.74672 0.88746 0.93506 0.90904 0.92144 0.92443 0.93692 0.91777 0.91773 0.90016 0.91975 0.90952 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.31 16 2 O -0.40 -18.43 10.31 -148.98 -1.54 -19.96 16 3 C 0.04 1.62 6.28 71.98 0.45 2.07 16 4 C 0.12 5.00 4.90 86.38 0.42 5.42 16 5 N -0.60 -27.41 2.04 -702.00 -1.43 -28.84 16 6 C -0.24 -13.79 9.53 84.03 0.80 -12.99 16 7 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 8 C -0.02 -0.98 5.26 84.86 0.45 -0.53 16 9 N -0.95 -61.23 13.97 21.65 0.30 -60.93 16 10 Si 0.94 45.87 25.15 68.60 1.73 47.60 16 11 H -0.28 -13.16 6.66 99.48 0.66 -12.49 16 12 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 13 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 14 C 0.14 5.05 5.83 86.38 0.50 5.55 16 15 C 0.12 4.18 5.95 86.38 0.51 4.69 16 16 N -0.71 -19.61 5.56 -463.62 -2.58 -22.19 16 17 C 0.53 16.05 7.60 87.50 0.66 16.72 16 18 O -0.60 -24.13 16.06 -3.02 -0.05 -24.18 16 19 C -0.22 -4.36 5.49 -11.31 -0.06 -4.42 16 20 H 0.15 2.20 7.84 -2.86 -0.02 2.18 16 21 C -0.10 -1.87 4.36 -11.54 -0.05 -1.92 16 22 H 0.08 2.13 7.53 -1.28 -0.01 2.12 16 23 C -0.09 -1.32 4.73 31.29 0.15 -1.17 16 24 C -0.11 -1.40 6.28 31.45 0.20 -1.20 16 25 C -0.12 -1.21 5.15 30.16 0.16 -1.06 16 26 C -0.11 -0.99 5.69 30.19 0.17 -0.81 16 27 C -0.13 -1.20 5.19 31.36 0.16 -1.03 16 28 C -0.09 -0.99 5.67 30.35 0.17 -0.82 16 29 C -0.07 -1.20 5.39 -12.59 -0.07 -1.27 16 30 H 0.09 1.77 8.40 -0.65 -0.01 1.76 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.65 5.94 -2.39 -0.01 1.63 16 36 H 0.04 1.92 3.50 -2.39 -0.01 1.91 16 37 H 0.10 3.08 7.92 -2.38 -0.02 3.06 16 38 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 39 H 0.08 2.32 7.91 -2.39 -0.02 2.30 16 40 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 1.89 6.00 -2.39 -0.01 1.87 16 43 H 0.42 8.19 8.47 -92.71 -0.79 7.41 16 44 H 0.09 1.18 5.28 -3.91 -0.02 1.16 16 45 H 0.05 0.79 8.35 -0.84 -0.01 0.78 16 46 H 0.07 0.86 8.12 -2.53 -0.02 0.84 16 47 H 0.06 0.87 7.49 -2.45 -0.02 0.85 16 48 H 0.06 0.55 8.16 -2.27 -0.02 0.54 16 49 H 0.04 0.44 8.19 -1.67 -0.01 0.43 16 50 H 0.06 0.49 8.32 -1.17 -0.01 0.48 16 51 H 0.06 0.59 6.92 -1.77 -0.01 0.58 16 52 H 0.08 0.83 4.30 -3.78 -0.02 0.82 16 53 H 0.06 0.48 8.37 -0.83 -0.01 0.48 16 54 H 0.07 0.71 8.21 -1.95 -0.02 0.69 16 55 H 0.08 0.79 6.93 -1.91 -0.01 0.78 16 Total: -1.00 -78.92 415.52 2.41 -76.51 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.10 Total: 22.45 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.88 Total: 9.54 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -3.71 Total: -111.96 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.58 Total: -44.14 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.73 Total: 47.60 kcal Total: -78.92 2.41 -76.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508053253.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.398 kcal (2) G-P(sol) polarization free energy of solvation -78.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds